More than 300 homologs were found in PanDaTox collection
for query gene RPC_3131 on replicon NC_007925
Organism: Rhodopseudomonas palustris BisB18



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007925  RPC_3131  response regulator receiver domain-containing protein  100 
 
 
138 aa  282  1.0000000000000001e-75  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.164774  normal 
 
 
-
 
NC_009485  BBta_0532  putative response regulator receiver (CheY-like protein)  38.06 
 
 
144 aa  104  5e-22  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.693911  normal  0.53556 
 
 
-
 
NC_009485  BBta_3940  putative two-component response regulatory protein, response regulator receiver  41.46 
 
 
155 aa  102  2e-21  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.238381  normal  0.445341 
 
 
-
 
NC_010814  Glov_1694  two component, sigma54 specific, transcriptional regulator, Fis family  33.07 
 
 
472 aa  80.9  0.000000000000005  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_007519  Dde_1018  response regulator receiver domain-containing protein  38.84 
 
 
131 aa  75.1  0.0000000000003  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.100773  n/a   
 
 
-
 
NC_009943  Dole_0885  response regulator receiver protein  32.82 
 
 
205 aa  75.1  0.0000000000003  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_1382  histidine kinase  36.89 
 
 
912 aa  74.7  0.0000000000004  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_007404  Tbd_0085  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  35.77 
 
 
738 aa  73.2  0.000000000001  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal  0.127866 
 
 
-
 
NC_009523  RoseRS_0761  two component transcriptional regulator  36.3 
 
 
229 aa  72.8  0.000000000002  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.179681 
 
 
-
 
NC_009767  Rcas_4445  two component transcriptional regulator  35.56 
 
 
229 aa  72  0.000000000003  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.14031 
 
 
-
 
NC_009483  Gura_3647  two component, sigma-54 specific, Fis family transcriptional regulator  32.54 
 
 
471 aa  71.6  0.000000000003  Geobacter uraniireducens Rf4  Bacteria  normal  0.0209004  n/a   
 
 
-
 
NC_009767  Rcas_3136  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  38.1 
 
 
919 aa  71.6  0.000000000003  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_014212  Mesil_0142  two component transcriptional regulator, winged helix family  32 
 
 
221 aa  71.2  0.000000000004  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.709604 
 
 
-
 
NC_002939  GSU0598  sigma-54 dependent DNA-binding response regulator  32 
 
 
470 aa  71.2  0.000000000005  Geobacter sulfurreducens PCA  Bacteria  normal  0.885444  n/a   
 
 
-
 
NC_010506  Swoo_0831  response regulator receiver protein  35.2 
 
 
122 aa  71.2  0.000000000005  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_010483  TRQ2_0467  response regulator receiver protein  33.33 
 
 
122 aa  71.2  0.000000000005  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_014150  Bmur_0291  two component, sigma54 specific, transcriptional regulator, Fis family  32 
 
 
444 aa  70.9  0.000000000006  Brachyspira murdochii DSM 12563  Bacteria  hitchhiker  0.00612417  n/a   
 
 
-
 
NC_010814  Glov_1827  response regulator receiver protein  33.06 
 
 
130 aa  70.9  0.000000000006  Geobacter lovleyi SZ  Bacteria  normal  0.32093  n/a   
 
 
-
 
NC_007925  RPC_1386  two component transcriptional regulator  35.48 
 
 
241 aa  70.5  0.000000000006  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.645659  normal  0.474436 
 
 
-
 
NC_012918  GM21_0684  two component, sigma54 specific, transcriptional regulator, Fis family  32.52 
 
 
469 aa  70.9  0.000000000006  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.0000000000150794 
 
 
-
 
NC_009486  Tpet_0452  response regulator receiver protein  32.54 
 
 
122 aa  70.1  0.000000000009  Thermotoga petrophila RKU-1  Bacteria  normal  0.17051  n/a   
 
 
-
 
NC_014248  Aazo_0463  response regulator receiver modulated diguanylate phosphodiesterase  29.85 
 
 
403 aa  70.1  0.00000000001  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_0411  two component transcriptional regulator  33.86 
 
 
230 aa  69.7  0.00000000001  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_011060  Ppha_2765  response regulator receiver protein  34.17 
 
 
119 aa  70.1  0.00000000001  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  0.557597  n/a   
 
 
-
 
NC_010571  Oter_4110  response regulator receiver protein  34.38 
 
 
126 aa  69.3  0.00000000001  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_4173  two component transcriptional regulator  36.97 
 
 
241 aa  69.7  0.00000000001  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.589597  normal  0.523463 
 
 
-
 
NC_013173  Dbac_0418  response regulator receiver protein  33.06 
 
 
123 aa  68.9  0.00000000002  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.22885  n/a   
 
 
-
 
NC_011769  DvMF_1251  multi-sensor hybrid histidine kinase  40.66 
 
 
1101 aa  68.9  0.00000000002  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    hitchhiker  0.000252838 
 
 
-
 
NC_013165  Shel_11290  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  32.58 
 
 
234 aa  68.9  0.00000000002  Slackia heliotrinireducens DSM 20476  Bacteria  normal  normal 
 
 
-
 
NC_007406  Nwi_2518  two-component transcriptional regulator  36.29 
 
 
246 aa  68.9  0.00000000002  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal  0.18728 
 
 
-
 
NC_007517  Gmet_2924  two component, sigma54 specific, Fis family transcriptional regulator  32 
 
 
470 aa  68.9  0.00000000002  Geobacter metallireducens GS-15  Bacteria  normal  0.777319  hitchhiker  0.0000000000564278 
 
 
-
 
NC_009767  Rcas_4344  two component transcriptional regulator  35.43 
 
 
239 aa  69.3  0.00000000002  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.325933  normal  0.345767 
 
 
-
 
NC_009523  RoseRS_0195  two component transcriptional regulator  34.65 
 
 
243 aa  68.9  0.00000000002  Roseiflexus sp. RS-1  Bacteria  normal  hitchhiker  0.00716616 
 
 
-
 
NC_009438  Sputcn32_1941  two component transcriptional regulator  36.15 
 
 
236 aa  68.9  0.00000000002  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_014230  CA2559_09498  two-component system, transcriptional regulatory protein  29.01 
 
 
236 aa  68.9  0.00000000002  Croceibacter atlanticus HTCC2559  Bacteria  normal  n/a   
 
 
-
 
NC_008578  Acel_1832  two component transcriptional regulator  35.2 
 
 
245 aa  68.9  0.00000000002  Acidothermus cellulolyticus 11B  Bacteria  normal  0.366424  normal  0.561636 
 
 
-
 
NC_013512  Sdel_1579  response regulator receiver  33.03 
 
 
225 aa  68.9  0.00000000002  Sulfurospirillum deleyianum DSM 6946  Bacteria  normal  0.410227  n/a   
 
 
-
 
NC_002967  TDE1969  sigma-54 dependent transcriptional regulator/response regulator  33.6 
 
 
473 aa  68.6  0.00000000003  Treponema denticola ATCC 35405  Bacteria  normal  0.440374  n/a   
 
 
-
 
NC_007484  Noc_3019  two component, sigma-54 specific, Fis family transcriptional regulator  34.4 
 
 
455 aa  68.2  0.00000000003  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_007512  Plut_0891  response regulator receiver domain-containing protein  33.6 
 
 
137 aa  68.6  0.00000000003  Chlorobium luteolum DSM 273  Bacteria  normal  normal 
 
 
-
 
NC_007512  Plut_2012  response regulator receiver domain-containing protein  34.48 
 
 
122 aa  68.6  0.00000000003  Chlorobium luteolum DSM 273  Bacteria  normal  normal  0.631712 
 
 
-
 
NC_011059  Paes_1214  response regulator receiver protein  34.4 
 
 
125 aa  68.6  0.00000000003  Prosthecochloris aestuarii DSM 271  Bacteria  normal  0.678516  hitchhiker  0.000513941 
 
 
-
 
NC_009092  Shew_0703  response regulator receiver protein  32.26 
 
 
120 aa  68.2  0.00000000003  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_3849  response regulator receiver (CheY) modulated Serine phosphatase  35.65 
 
 
412 aa  67.8  0.00000000004  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.658628 
 
 
-
 
NC_011146  Gbem_0671  two component, sigma54 specific, transcriptional regulator, Fis family  33.33 
 
 
469 aa  67.8  0.00000000004  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_3458  multi-sensor signal transduction histidine kinase  31.25 
 
 
958 aa  67.8  0.00000000005  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_013223  Dret_0548  two component, sigma54 specific, transcriptional regulator, Fis family  37.5 
 
 
452 aa  67.8  0.00000000005  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.902927  normal 
 
 
-
 
NC_007778  RPB_0463  two component transcriptional regulator  35.16 
 
 
233 aa  67.8  0.00000000005  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.966783  normal  0.711351 
 
 
-
 
NC_007925  RPC_0597  two component transcriptional regulator  36.15 
 
 
233 aa  67.8  0.00000000005  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_0367  winged helix family two component transcriptional regulator  35.16 
 
 
233 aa  67.8  0.00000000005  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.0127671 
 
 
-
 
NC_009485  BBta_5328  putative two-component response regulatory protein  32.59 
 
 
133 aa  67.4  0.00000000006  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.247483  normal  0.152499 
 
 
-
 
NC_009523  RoseRS_2343  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  34.4 
 
 
921 aa  67.4  0.00000000006  Roseiflexus sp. RS-1  Bacteria  normal  0.762005  normal 
 
 
-
 
NC_011894  Mnod_6354  multi-sensor hybrid histidine kinase  39.37 
 
 
699 aa  67.4  0.00000000006  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_0643  two component, sigma54 specific, Fis family transcriptional regulator  31.2 
 
 
478 aa  67.4  0.00000000006  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_013732  Slin_6964  two component transcriptional regulator, winged helix family  30.89 
 
 
226 aa  67.4  0.00000000007  Spirosoma linguale DSM 74  Bacteria  normal  0.043471  normal  0.107802 
 
 
-
 
NC_011004  Rpal_0361  two component transcriptional regulator, winged helix family  35.16 
 
 
233 aa  67  0.00000000007  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.324623  n/a   
 
 
-
 
NC_010087  Bmul_5813  two component transcriptional regulator  35.66 
 
 
253 aa  67.4  0.00000000007  Burkholderia multivorans ATCC 17616  Bacteria  normal  hitchhiker  0.00548874 
 
 
-
 
NC_009901  Spea_1391  response regulator receiver protein  32.58 
 
 
368 aa  67.4  0.00000000007  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_27940  putative two-component response regulator  37.04 
 
 
394 aa  67.4  0.00000000007  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_008340  Mlg_0356  response regulator receiver protein  34.13 
 
 
121 aa  67  0.00000000008  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.0780111  normal  0.957515 
 
 
-
 
NC_009485  BBta_7367  two component transcriptional regulator  35.2 
 
 
233 aa  67  0.00000000008  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_002620  TC0753  sigma-54 dependent response regulator  33.33 
 
 
387 aa  67  0.00000000009  Chlamydia muridarum Nigg  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_1237  two component transcriptional regulator, winged helix family  34.88 
 
 
234 aa  66.6  0.00000000009  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.178035  n/a   
 
 
-
 
NC_011004  Rpal_4852  two component transcriptional regulator, winged helix family  33.86 
 
 
240 aa  67  0.00000000009  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007406  Nwi_0348  transcriptional regulatory protein  35.2 
 
 
233 aa  66.6  0.00000000009  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.618403  normal  0.242627 
 
 
-
 
NC_007413  Ava_0649  response regulator receiver Signal transduction histidine kinase  30.71 
 
 
387 aa  67  0.00000000009  Anabaena variabilis ATCC 29413  Bacteria  normal  0.736737  normal  0.226718 
 
 
-
 
NC_009485  BBta_1737  two component transcriptional regulator  34.11 
 
 
243 aa  67  0.00000000009  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.151372  normal  0.336316 
 
 
-
 
NC_009767  Rcas_0421  two component transcriptional regulator  29.27 
 
 
245 aa  67  0.00000000009  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.0518956  normal 
 
 
-
 
NC_007964  Nham_0443  two component transcriptional regulator  35.2 
 
 
233 aa  66.6  0.00000000009  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_2050  two component transcriptional regulator  32.17 
 
 
226 aa  67  0.00000000009  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU1291  response regulator  34.38 
 
 
123 aa  66.6  0.0000000001  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_2426  DNA-binding response regulator  36.07 
 
 
237 aa  66.6  0.0000000001  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_007333  Tfu_0343  response regulator receiver  33.58 
 
 
232 aa  66.2  0.0000000001  Thermobifida fusca YX  Bacteria  normal  0.86362  n/a   
 
 
-
 
NC_009523  RoseRS_4619  two component transcriptional regulator  29.27 
 
 
245 aa  66.6  0.0000000001  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.0926269 
 
 
-
 
NC_011145  AnaeK_0439  two component transcriptional regulator, winged helix family  35.29 
 
 
230 aa  66.2  0.0000000001  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_1875  response regulator receiver modulated metal dependent phosphohydrolase  37.17 
 
 
361 aa  66.6  0.0000000001  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_008576  Mmc1_3210  response regulator receiver protein  31.2 
 
 
124 aa  66.6  0.0000000001  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_3577  response regulator receiver protein  37.96 
 
 
393 aa  66.6  0.0000000001  Pseudomonas putida F1  Bacteria  decreased coverage  0.00266085  normal 
 
 
-
 
NC_009441  Fjoh_3918  two component transcriptional regulator  32.8 
 
 
230 aa  65.5  0.0000000002  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_0268  two component transcriptional regulator, winged helix family  33.86 
 
 
227 aa  65.9  0.0000000002  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.509377 
 
 
-
 
NC_010524  Lcho_0915  Hpt sensor hybrid histidine kinase  34.75 
 
 
822 aa  65.9  0.0000000002  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_005957  BT9727_1790  response regulator  31.54 
 
 
254 aa  65.5  0.0000000002  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  0.0306127  n/a   
 
 
-
 
NC_010424  Daud_2177  response regulator receiver protein  31.4 
 
 
120 aa  65.9  0.0000000002  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_1912  response regulator receiver:stage II sporulation E  35.78 
 
 
394 aa  65.5  0.0000000002  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.432168  hitchhiker  0.00180426 
 
 
-
 
NC_011891  A2cp1_1954  two component, sigma54 specific, transcriptional regulator, Fis family  28 
 
 
464 aa  65.5  0.0000000002  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.611403  n/a   
 
 
-
 
NC_010725  Mpop_2980  response regulator receiver protein  34.92 
 
 
121 aa  65.5  0.0000000002  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_007484  Noc_0676  two comoponent transcriptional regulator  33.08 
 
 
231 aa  65.9  0.0000000002  Nitrosococcus oceani ATCC 19707  Bacteria  hitchhiker  0.00000000021656  n/a   
 
 
-
 
NC_013517  Sterm_1892  two component transcriptional regulator, winged helix family  30 
 
 
219 aa  65.9  0.0000000002  Sebaldella termitidis ATCC 33386  Bacteria  hitchhiker  0.00404304  n/a   
 
 
-
 
NC_007520  Tcr_0754  response regulator receiver domain-containing protein  31.5 
 
 
120 aa  65.9  0.0000000002  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_1682  response regulator receiver modulated serine phosphatase  36.11 
 
 
412 aa  65.9  0.0000000002  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_009523  RoseRS_3818  two component transcriptional regulator  33.6 
 
 
230 aa  65.9  0.0000000002  Roseiflexus sp. RS-1  Bacteria  normal  0.386967  normal  0.165932 
 
 
-
 
NC_009831  Ssed_3764  response regulator receiver protein  30.16 
 
 
121 aa  65.9  0.0000000002  Shewanella sediminis HAW-EB3  Bacteria  normal  0.105051  normal 
 
 
-
 
NC_007964  Nham_3137  two component transcriptional regulator  35.2 
 
 
242 aa  65.5  0.0000000002  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_009457  VC0395_A0568  response regulator  36.07 
 
 
368 aa  65.9  0.0000000002  Vibrio cholerae O395  Bacteria  hitchhiker  0.00216047  n/a   
 
 
-
 
NC_009972  Haur_0605  adenylate/guanylate cyclase  33.86 
 
 
355 aa  65.5  0.0000000002  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.657653  n/a   
 
 
-
 
NC_008347  Mmar10_0766  two component transcriptional regulator  33.61 
 
 
233 aa  65.9  0.0000000002  Maricaulis maris MCS10  Bacteria  normal  0.528482  normal  0.302775 
 
 
-
 
NC_008554  Sfum_2806  two component, sigma54 specific, Fis family transcriptional regulator  29.79 
 
 
450 aa  65.9  0.0000000002  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_1706  response regulator receiver modulated serine phosphatase  37.96 
 
 
393 aa  65.9  0.0000000002  Pseudomonas putida GB-1  Bacteria  normal  hitchhiker  0.000168842 
 
 
-
 
NC_009767  Rcas_0997  two component transcriptional regulator  33.6 
 
 
230 aa  66.2  0.0000000002  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.679101  normal 
 
 
-
 
NC_009767  Rcas_0960  two component transcriptional regulator  33.6 
 
 
236 aa  65.5  0.0000000002  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.0214647 
 
 
-
 
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