| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3136 |
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| Symbol | |
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| ID | 5540634 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 4065428 |
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| End bp | 4068187 |
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| Gene Length | 2760 bp |
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| Protein Length | 919 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640895257 |
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| Product | response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_001433208 |
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| Protein GI | 156743079 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCTTCTC CTGGTCACAT TCTCGTAGTA GATGATCACG ACTATATTCG GAATGCGCTG
GCGCGGCAGT TGGAGCGCGC CGGTCACACA GTAGTCCTTC GATCCGACGG CATTCAAGCG
CTCGAAGCAG TGCGGCAGCA GGCGTTCGAC CTGATCCTGC TCGACATTTT GATGCCCGGC
ATGCGGGGCG ATCGTGTGCT TGCGACGCTG AAATCCGATC CCGCGCTGCG TCACATTCCA
GTCATTGTCA TCTCCGGCGA TCAAGATCTC GATCTGGTTG CGCACTGTAT TGAACTTGGC
GCTGCCGATT ATTTGGGCAA GCCGTTCAAC GCAACCATTC TGCACGCGCG TGTCAATGCC
TGCCTGGAGC AGAAGCGGCT GCGCGACACC GAACAGGCAT ATCTGCGCAT GCGGCTGCAA
TTGCTCAGCA CGGCAGCGGA TCATCCGGCA ACCGCTCATG ATCCGACGAT CCAGCAGGCA
ATCCGGAACT CTGCCGGTTT CGAAGCGGTT GATCAGACGT TACAGGCTAT GCTCAACCGC
CTCGAGGAGG AACAGCGCGA GCGGCAGCGC GCGGAAGAGG AGTTGCGCGC ACTGAACCTT
ATGCTCGAAC AGCGCGTCGC GGAACGCACC ATGCTGGCAG AGCAACGCGC TGAAGCATTG
AAGCGCTCTG AAGCATCGCT GCGACAGCAG ACGAACCTCT TGCTTGCAGT CCTCGATAGT
ATGGGCGATG CCGTTGTGGT GACCGATGCC GCCGGGCGCC TGATACTCTA CAACTCCGCC
GCTGTGCATA TGCTCGGTGA TCGCCTGATG AGTCTGCTGC CGAGTGCGCC AGATACCCAG
GTTGCTCAGT CGCCTGATGG CCGTTCCTCC CTGACCCCGC GCGATCTGCC GTTTGCGCGT
GCGCTTCGTG GTGAGTCGGT GAATGCAGCG GAAGTGCATC TGCCCGCTGG AGATGCCGGT
GCAGAGCAAT GGTTGAGTAT TACCGCCCGT CCGCTCCGCG ATACAGAAGG GTTGAGCGGG
AGCGTGGCGA TTGTGCGGGA TGTGACGGAA GCCAAACGCG CTGAGGCGGC GCTGCGCGCC
AGCGAAGAGC GGTATGCGCT GGCGGCGCAG GGCGCCAACG ATGGGTTGTG GGATTGGGAT
CTCGTCAATG ATAGAATCTA TTTCGCATCG CGCTGGAAGG CAATGTTGGG ATATGGTGAT
GATGAGATCG GTACGTCTCC CGATGAGTGG TTCAGTCGCG TCCATCCCGA TGATCGCGAA
CGGGTCGAAC TGCGCCTCCT GGCGCATACG CGCCGCCTGA TTGCATCGTT CGAACTCGAA
TATCGCATCC TCCATCGTGA TGGCGCCTAC CGCTGGATGC TCTGTCGCGG CATCGCCGTG
TGGGATGCGA GTGGTCGAGC AACGCGGATG GTTGGTTCGC AGACCGATAT TACCGATCGG
AAACGCGCGG AGGAGCGATT GGAGTATGGC ATCCTTCACG ATACGCTGAC CGGATTGCCC
AATCGGACCC TCTTCATGGA CCGATTGAGC CTGGCGCTCA GACGATCACA GCGCGAACGG
TCGTTGTTTG CCGTGCTGTT TCTCGATCTT GATCGCTTCA AAACGATCAA TGACAGCCTG
GGGCATGCCG CCGGCGATGA GTTGCTGGTC GTTGTCGCGC GGCGGTTGGA GGGTGTTTTG
CGTCCAGGCG ATACGGTGGC GCGGTTGGGT GGTGATGAGT TCGCGGTGAT GCTCGACCGG
TTGGATGCGC CGGAAGATGC CGAATGGATC GCAGAACGCA TTCAACAGGC GCTGCGCGCA
CCATTGACCA TCGGCGGTCG CACGGTCTAT ACCACGGCAA GCATTGGTCT GGTGTTGAGC
AACCAGGGAT ATGAACGTGC TGAGGAGATT GCGCGCGATG CCGATACAGC GATGTATCAG
GCAAAGATGG GGCAGCGCGC GCGCTATGTC GTTTTCGATC CGGATATGCG TCGGAAGGCG
CTCAGTCATT TTCAGCTCGA AAACGATCTG CGCAGTGCGA TTGAACACGG TGAGTTGTGC
GTGTACTACC AGCCAATTGT TGCGCTCACC AGTGGACGAA TCGTTGCAGT GGAGGCGCTC
GCGCGCTGGC AGCATCCTCA GTATGGTTTG ATTGCTCCCG ATCAGTTTAT TGCGCTGGCT
GAAGAGGTTG GGCTGATCAA TGCCATCGGT CAGTGGGTGT TGCAGGAAGC ATGTCGTCAA
TTGCGCGTGT GGCGCACCTA CTATCCGCAC TACGCCGATA TGTGGGTGAA TGTCAACCTG
TCGGCGCATC AACTGGCGCA ACCCGATCTG GTTGCGCAGG TCGCTGACAC GATTGCGAGG
AACGATGTGC CGGCGCGCGC GCTCAAACTG GAGATTACCG AGAATACGTT CATTACGCAT
CGCGATGTGG CTGCCGCGCA GTTGAACGAC CTCCGATCAC TCGGTGTCGG GGTGTGTATC
GATGATTTTG GCACCGGCTA TTCGTCGCTC AGTTACCTGA GCCAGTTTCC GGTCGATACC
CTAAAGATTG ATCGGGTCTT CATTAATCGT CTCGGCGCCG CGCGCGAACA TCGCGAAATT
GTGAAAGCGA TCATCACCCT GGCGCATTCG CTAGGTATGA CTGTTGTCGC CGAGGGGGTC
GAAACGCTCG ATCAGGCGAA CGAGCTGCGC GCCTTGCGCT GCGAATATGC GCAGGGGTGG
CTCTTTGGCT GCACGGCGCC GCCGGAACAG ATGGAACAAA TGCTGGCGGC TCATCAATGA
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| Protein sequence | MPSPGHILVV DDHDYIRNAL ARQLERAGHT VVLRSDGIQA LEAVRQQAFD LILLDILMPG
MRGDRVLATL KSDPALRHIP VIVISGDQDL DLVAHCIELG AADYLGKPFN ATILHARVNA
CLEQKRLRDT EQAYLRMRLQ LLSTAADHPA TAHDPTIQQA IRNSAGFEAV DQTLQAMLNR
LEEEQRERQR AEEELRALNL MLEQRVAERT MLAEQRAEAL KRSEASLRQQ TNLLLAVLDS
MGDAVVVTDA AGRLILYNSA AVHMLGDRLM SLLPSAPDTQ VAQSPDGRSS LTPRDLPFAR
ALRGESVNAA EVHLPAGDAG AEQWLSITAR PLRDTEGLSG SVAIVRDVTE AKRAEAALRA
SEERYALAAQ GANDGLWDWD LVNDRIYFAS RWKAMLGYGD DEIGTSPDEW FSRVHPDDRE
RVELRLLAHT RRLIASFELE YRILHRDGAY RWMLCRGIAV WDASGRATRM VGSQTDITDR
KRAEERLEYG ILHDTLTGLP NRTLFMDRLS LALRRSQRER SLFAVLFLDL DRFKTINDSL
GHAAGDELLV VVARRLEGVL RPGDTVARLG GDEFAVMLDR LDAPEDAEWI AERIQQALRA
PLTIGGRTVY TTASIGLVLS NQGYERAEEI ARDADTAMYQ AKMGQRARYV VFDPDMRRKA
LSHFQLENDL RSAIEHGELC VYYQPIVALT SGRIVAVEAL ARWQHPQYGL IAPDQFIALA
EEVGLINAIG QWVLQEACRQ LRVWRTYYPH YADMWVNVNL SAHQLAQPDL VAQVADTIAR
NDVPARALKL EITENTFITH RDVAAAQLND LRSLGVGVCI DDFGTGYSSL SYLSQFPVDT
LKIDRVFINR LGAAREHREI VKAIITLAHS LGMTVVAEGV ETLDQANELR ALRCEYAQGW
LFGCTAPPEQ MEQMLAAHQ
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