| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_2343 |
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| Symbol | |
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| ID | 5209310 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus sp. RS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009523 |
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| Strand | + |
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| Start bp | 2896427 |
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| End bp | 2899192 |
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| Gene Length | 2766 bp |
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| Protein Length | 921 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640595948 |
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| Product | response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_001276672 |
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| Protein GI | 148656467 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.762005 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCATTCT CTGGAACTAT TCTGGTTGTC GATGACCACG AGCACGTGCG AAACGCACTG
GTGCGGCAAC TCGAGGTTGC CGGACACACC GTGATCGCCC GTTCTGACGG CATTCAGGCG
CTCGAAGCGG TGCAACAGTA CACGTTCGAT CTGATACTGC TCGACATTCT GATGCCCGGC
ATGAGCGGCG ACAAAGTGCT CGCAGCACTC AAAGCGGATG CTGCTCTCCG TCATATTCCG
GTCATCGTTA TTTCCGGCGA CCAGGATCTC GACCTGGTTG CGCGCTGCAT CGAACTGGGC
GCTGCCGATT ATCTGGGCAA GCCGTTCAAT AAGACGATCC TCCACGCGCG TGTCAATGCC
TGCCTGGAGC AGAAACGTCT GCGTGACGCC GAGCAGGCGT ATCTGCGTAT GCGACTGTAT
CTGCTGAGCG CTGCCGCAGA TCATCCGGCA ATCACCGATA ATCCAGACAT TCAAGAGGCA
TTACATCATC CTGATAATCT GGCAACCGTT GATCAAACCA TACAGGCGCT GCTCAACCGT
CTCGAGGCAG AGCAGCGCGA ACGGCGGCGC GCCGAGGCGG AGTTGCGCAA CCTCAACCTC
GCGCTCGAAC AACGGGTTGC TGAGCGCACC ATGCTGGCGG AGCAGCGCGC CGAGGCGCTG
AAACGTTCTG AGGAAGCGCT CCGCCAGCAG ACGAATCTCC TGCGCGCAAT TCTCGACAGT
ATGGGTGATG CAGTGGTTGT CACCGATACC GATGGGCATT TGATCCACCA TAACCCGGCA
GCAGTTCAGA TCCTCGGTGA TCGTCTGGCG AGTCTGCTTC CCGGATCGTC CAGCGCACCG
GTGGCACAGT CGCCAGACGG ACGTTCCTGG TTGACGCCGC ATGATCTCCC GTTTGCACGC
GCCTTGCACG GCGAGTCGGT CGATGCGGCG GAGGTGCGAT TGCCCGCAAC CGACTGCCAT
CCAGAGCAGT GGTTGAGCAT CACGGCGCGC CCGCTCCGTG ATACGGATGG CTTGAGCGGG
AGCGTCGCCA TTGTGCGGGA TGTCACCGAA GCAAAGCGCG CTGAAGAGGC GTTGCGCGCC
AGTGAGGAAC GGTACGCGCT CGCAGCTCAG GGAGCAAATG ATGGGTTGTG GGACTGGGAC
CTCGTCAGCG GCAAGATCTA TTTCGCACCG CGCTGGAAAG CGATGCTGGG GTATGATGAT
ACCGACATCG GCACATCACC CGATGAGTGG TTCCGTCGGT TGCATCCCGA TGATCGCGAG
CGGGTCGAAT GGCGTCTGCT GGCGCACACC CGTCGTCTGA TTACATCGTT TGAACTGGAA
TACCGCATTC TGCATCGTGA CGGCAACTAT CGCTGGATGC TCTGTCGCGG CATGGCAGTA
TGGGATGAGC ATGGTCGGGC AACGCGTATG GTCGGTTCGC AGACCGATAT AACCGGTCGC
AAACAGGCGG AGGAGCAACT GGCGTATGGC GCGCTTCACG ATGCGCTGAC GGGGTTGCCG
AATCGAACCC TCTTTATGGA TCGCCTGAGC CTGGCGCTCA AACGAGCACA GCGCGAAAAG
CATCTGTTCG CAGTGCTGTT CCTCGATCTT GATCGCTTCA AAACCATCAA CGACAGCCTG
GGGCATGCTG CGGGTGATGA GTTGCTGATC GCCGTCGCGC GGCGGCTTGA AAGCGTCCTG
CGTCCCGGTG ATACGGTTGC CCGGCTGGGC GGCGATGAGT TTGCCGTGAT GCTTGATCGG
TTGAATGCGC CGGAAGAAGC AGAGTGGATC GTGGAACGCA TTCATCAGGC GTTGCAGGCG
CCGTTGAGCG TTCGTGGTCA TACCGTCTAC ACCACCGCCA GCATTGGTCT GGCGCTCGGC
AATGAAGGGT ATGAGCGCCC GGAAGAGCTG GCGCGCGATG CTGATACGGC GATGTATCAG
GCAAAAATGC AACGACGCGC GCGCCACGTT GTTTTCGATC CCGATATGCG ACGAAAAGCG
GTCAGTCATT TTCAACTTGA GAACGATCTA CGGAGCGCTA TCGAGCGCAA TGAGTTGCGT
GTCCACTATC AACCGATCGT CGCCCTTAAT GGTCGGAGGG TGGTCGCCTT CGAAGCGCTG
GCGCGCTGGC AGCATCCGCA GCACGGCTTG ATCTCTCCCG ATCAATTTAT CCCGCTTTCT
GAAGAGATCG GGTTGATCAA TACGATCGGT CACTGGGTGC TGCGCGACGT CTGTCATCAG
GTGCGCGAAT GGCGCAGGCG CCGACCGCGC CACTTCGATA TGTGGGTGAA TGTCAACCTT
TCGGCGCACC AGCTGGCTCA ACCCGACCTG GTGGCACAGA TTGCACATGC TATAGCCGAT
GCCGGGATAC CGCCGAATGC GATCAAGATC GAGTTGACCG AAAACACATT TGTCACGCAC
CGGGAGATAG CCATCGCCCA ATTGAACGAA CTACGTTCGC TGGGGGTCGG TGTGTGCATC
GATGATTTTG GCGCCGGCTA CTCATCACTC GGCTATTTGA GTCAATTCCC GGTCGATACG
TTGAAGATCG ACCGGGTATT CATCGCCCGG CTCGGTATGA TGCGTGAACA TTATGAGATC
GTCAAGGCGA TCATTACACT GGCGCATTCG CTGGGAATGA CGGTGGTCGC CGAGGGGGTC
GAAACCGAAG AACAGGCAAC TATGCTTTCC GCCCTGCGCT GCGAGTATGC CCAGGGATGG
CTGTTTGGAC GGGCGCTCCC GGCGGATCAG GTCGAAGCGT TCCTGGATTC ACGTTCGTCG
TTGTAG
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| Protein sequence | MSFSGTILVV DDHEHVRNAL VRQLEVAGHT VIARSDGIQA LEAVQQYTFD LILLDILMPG
MSGDKVLAAL KADAALRHIP VIVISGDQDL DLVARCIELG AADYLGKPFN KTILHARVNA
CLEQKRLRDA EQAYLRMRLY LLSAAADHPA ITDNPDIQEA LHHPDNLATV DQTIQALLNR
LEAEQRERRR AEAELRNLNL ALEQRVAERT MLAEQRAEAL KRSEEALRQQ TNLLRAILDS
MGDAVVVTDT DGHLIHHNPA AVQILGDRLA SLLPGSSSAP VAQSPDGRSW LTPHDLPFAR
ALHGESVDAA EVRLPATDCH PEQWLSITAR PLRDTDGLSG SVAIVRDVTE AKRAEEALRA
SEERYALAAQ GANDGLWDWD LVSGKIYFAP RWKAMLGYDD TDIGTSPDEW FRRLHPDDRE
RVEWRLLAHT RRLITSFELE YRILHRDGNY RWMLCRGMAV WDEHGRATRM VGSQTDITGR
KQAEEQLAYG ALHDALTGLP NRTLFMDRLS LALKRAQREK HLFAVLFLDL DRFKTINDSL
GHAAGDELLI AVARRLESVL RPGDTVARLG GDEFAVMLDR LNAPEEAEWI VERIHQALQA
PLSVRGHTVY TTASIGLALG NEGYERPEEL ARDADTAMYQ AKMQRRARHV VFDPDMRRKA
VSHFQLENDL RSAIERNELR VHYQPIVALN GRRVVAFEAL ARWQHPQHGL ISPDQFIPLS
EEIGLINTIG HWVLRDVCHQ VREWRRRRPR HFDMWVNVNL SAHQLAQPDL VAQIAHAIAD
AGIPPNAIKI ELTENTFVTH REIAIAQLNE LRSLGVGVCI DDFGAGYSSL GYLSQFPVDT
LKIDRVFIAR LGMMREHYEI VKAIITLAHS LGMTVVAEGV ETEEQATMLS ALRCEYAQGW
LFGRALPADQ VEAFLDSRSS L
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