Gene DvMF_1251 details

Gene Information

• Locus tag: DvMF_1251
• ID: 7173154
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Desulfovibrio vulgaris str. 'Miyazaki F'
• Kingdom: Bacteria
• Replicon accession: NC_011769
• Strand: +
• Start bp: 1546455
• End bp: 1549760
• Gene Length: 3306 bp
• Protein Length: 1101 aa
• Translation table: 11
• GC content: 67%
• IMG OID: 643539759
• Product: multi-sensor hybrid histidine kinase
• Protein accession: YP_002435669
• Protein GI: 218886348
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG0642] Signal transduction histidine kinase
• TIGRFAM ID: [TIGR00229] PAS domain S-box

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 45
• Fosmid unclonability p-value: 0.000252838
• Fosmid Hitchhiker: Yes
• Fosmid clonability: hitchhiker

Sequence

Gene sequence

ATGAGCACCC GCACCGCCTG TCGCGTCTTC TCTCCCCACG CCACCGGCAT CGCCACGCCG 
CGCCCCCCTG CCGCGCGCAC CGCCTTGCGT CTGCCGTCCG CCACAGCATT CGGCCCAGCA 
TTCGGCCCGG CATTCTGCCC GGTATCCGCC CTGATATCCG CCCTGACATC CACCCTGACC 
TCCGCCCTGC TGTCCATTGC CGCGTGTGCG TTCCTGCTGG CCGCGTGGCC CGCTCCCGGC 
CTTGCCGCGC CGCAACGGGC CCTGCTGATC AGTTCCTACC ACCCGGCTTT CCCCACCTTC 
TTCCAGCAGA TCGACGGCAT CCGCTCGGAA CTGGACCCGG CGGGCGTGGC CCTGGACGTG 
GAATTCATGG ACAGCAAGCG CTTCAACGAC CCGCGCAACC AGGCCCACTT TCTCGACCAC 
CTGCGCTACA AGTTGTCCCG CGTGGCCCCG TACGACGTCA TCATCACCTC GGACGACAAC 
GCGCTGAACC TTGCCCTGGA ACACCGGGAT GCCCTGTTCC CCGCCACGCC CGTGGTCTTC 
TGCGGGGTCA ACAACGTGGC GCTGGCCCAG GGCCTGAGCG GTGCCCCCGC CTTTACCGGG 
GTCATCGAGG CCGTTTCCAT GCAGGAAACG CTGGAACTGA TCCGCCTGTT GCGCCCACGC 
GGCACCATTC ACGCCATCTC GGACGCCACA TTGTCCGGAC GGGCGGACAT GCTGACCTTT 
CGCGAGCTGG CGGCCCGCAA CGTCCCGGCC CCCAGCCGGG AACTGTCGCT GGAAAACCTG 
ACCTGGGACG ACCTGGCCCG CCGAGTGGCT GCCCTGCCCG GCACCGACGC CATCCTGCTG 
CTTTCGGCGT ACGAAGACGC GGCGGGCGCA CCCAGGCCGT TCGAGGAAAG CCTGGCCTTC 
ATCCTGCGCC ACGCCGACGC GCCGGTGTTC CACCTGTGGG AGCATGGCCT GGGCAAGGGG 
CTGGCGGGCG GCAAGGTCAT TTCGCACTTC GAGCAGGGAC GCATCGCGGC GCAACTGGCC 
CTGCGCATCA TGAACGGCGC ATCCCCCGGC GACATCCCCG TGATCGAGGG CGACGCAGCC 
AACAGATACA TCTTCGACCA TCAGGTGCTG GCGCGCTTCG GCATCGCGGA AAGCCAGCTG 
CCGCCGGGCA GCCGCATCCT CAACGCCCCC TCGTCGCCGT GGGTGGTCTA CCGGCGCGAA 
CTGCGGGTGG CGGCGGCAGC GCTGGTGGTC ATCCTGGCTC TGACGCTCTT CCTGATCTTC 
CACGTCATCC GCCTGCGCCA GGCCAGAACG GACGTCCGCC ACAGCGAGGA ACGCTACCGC 
ATCCTGTTCG ACCAGTCGCC CGTCGGCATC GCCCACTTCG ACGGCGAAGG CGGCATCATT 
GCCCTGAACG CCAAATTCCA GGAAATCGTG GGGGCGCCGC GCCACAAGGT GCTGGGGCTG 
AACATGCTGC ACGACGTGCG CGACCCCGAA ATGCTGCGGG CCGTGCGCAC CGCCTTCGAA 
GGCGGCATAG GCCGTTACGA GGGCAGCTAC ACCTCGGTGG CGGGCCGCAA GACCACGCTG 
GTCAGCTGCA TTCTCAAGTG CATCTTCGCG CCGGGCGGCA GGCACCTGTA CGGACTGATA 
ATGGCGGAAG ACCTCACCGA ACGTCGCCGG GCGGAAGACA CCCTGCGCGA ACGCGAAATG 
TTCCTGCTGG AAACCCAGCG CATCACCCGC GTGGGCGGGT GGAAGGCGGG CACCCGGTCC 
GACAGGCTGG TCTGGACCGA CGAGGTCAAC CGCATCCTCG AGGTGCCGCC GGACTACAAG 
CCGGGGCTTG CCGAGAGCAT TTCGTTCTAC GCGCCGGAAT ACCGGCCTGG GGTGTGGCAG 
ATGCTGCAGA CCGTGGCCCG CGACGGCACC CCCGTGGATC TGGAATGCGA GGTCGTCACC 
AGCCTGGGCG CGCGCAAGTG GACCCACCTG CGCGCGGTGG GCCGCGTGGA AGAGCACGGG 
GAACAGCTCA TCCTGGGCAC GCTTCAGGAC ATCACCGAAC GCAAGACGGC GGAAATCGAA 
CTGCTCAACG CCAAGCTGCG GGCAGAGGCC GCCAGCAAGG CCAAGAGCGA ATTCCTGGCC 
AACATGAGCC ACGAGATACG CACCCCGCTC AACGGCATTC TGGGCATGCT CCAGCTCATG 
CACACCACCC GGCTGGGTGC CGAGCAGGCG GACTATGCGG ACATCGCCAT CCAGTCCGGC 
AGGCGACTGG CGCGGCTGCT TTCCGACATG CTGGACCTGT CGCGCATCGA ATCGGGCAAG 
CTGGATATCC GCCACGTGCC CTTCCAGCTT GCGGCAGCGG TGCAGCAGGT GGTGGAACTG 
TTCCTGCCCA TTTCGCTGCA AGCGGGGATA CGGCTCGACG TGCGCATGGA CCCGACCACC 
CCCGAAACCT TGCTTGGCGA CATCGTGCGG GTGCAGCAGG TGCTCACCAA CCTGCTGGGC 
AATTCCTTCA AGTTCACCAG AATCGGCGGC ATCACCTTGG CGGTCCACCG CCTGCCCCCG 
CCGCACGCCC CTGCCTGCCG GGTGCTGTTC ACCATTTCGG ACACGGGGTG CGGCATTCCG 
GAAGACAAGC TGGGCGAACT GTTCGAGCCG TTCACCCAGG CCAGCAACGG AATGCGCCGC 
TCGCACCAGG GCGCCGGGCT GGGGCTTTCC ATCTGCAAGC GGCTGGTGCA CCTGATGGGC 
GGGGAAATCA CCATCGAAAG CGAGGAAGGC GCGGGCACCA CGGCCTGCGT CAGCCTGCCC 
TTCACCTTGG TGCCCGATAC CGGCGAAAGG ACGGAGGTGC CGGATACGGC GAATGCGCCT 
GACCTTCCCG ATGTGCCCAG TGTTGCCGGC GTGTCCGGCA TGCCTGGCGC GCAGGGTGCG 
GCACCGGCCC CCCGGTCAGA TGCGGCCTTG CCCTGCCGGA TCCTGCTGGT GGAAGACGAC 
CCGGTAACCC AGCTGGCCGT GCGACGGATG CTGGAAAAGG CGGGCCACAC CGTCACCGTG 
GCGGGGGACG GGCGCGCCGG CCTGAACGCG CTGGCTGGCG GCTCGTTCGA CATGGTGCTC 
ATGGACATCC AGATGCCCAC CATGGACGGC ATGGAGGCCG TTGCACGCAT TCGCAAGGGT 
GAGGCCGGGC CGGACAGGGC GGGCATTCCC ATCGTGGCCC TGACCGCCTA CGCCATGGAG 
GGTGACCGGG AACGATTCAT GGGTGCAGGC ATGGACGCCT ACGCCACCAA GCCCACGGAC 
ATGGATACGC TGCATGCGGT CATTGGCCGC CTGTGCGGGC AGGGGCAGAC AACACGGCAA 
GGATAG 

 

Protein sequence

MSTRTACRVF SPHATGIATP RPPAARTALR LPSATAFGPA FGPAFCPVSA LISALTSTLT 
SALLSIAACA FLLAAWPAPG LAAPQRALLI SSYHPAFPTF FQQIDGIRSE LDPAGVALDV 
EFMDSKRFND PRNQAHFLDH LRYKLSRVAP YDVIITSDDN ALNLALEHRD ALFPATPVVF 
CGVNNVALAQ GLSGAPAFTG VIEAVSMQET LELIRLLRPR GTIHAISDAT LSGRADMLTF 
RELAARNVPA PSRELSLENL TWDDLARRVA ALPGTDAILL LSAYEDAAGA PRPFEESLAF 
ILRHADAPVF HLWEHGLGKG LAGGKVISHF EQGRIAAQLA LRIMNGASPG DIPVIEGDAA 
NRYIFDHQVL ARFGIAESQL PPGSRILNAP SSPWVVYRRE LRVAAAALVV ILALTLFLIF 
HVIRLRQART DVRHSEERYR ILFDQSPVGI AHFDGEGGII ALNAKFQEIV GAPRHKVLGL 
NMLHDVRDPE MLRAVRTAFE GGIGRYEGSY TSVAGRKTTL VSCILKCIFA PGGRHLYGLI 
MAEDLTERRR AEDTLREREM FLLETQRITR VGGWKAGTRS DRLVWTDEVN RILEVPPDYK 
PGLAESISFY APEYRPGVWQ MLQTVARDGT PVDLECEVVT SLGARKWTHL RAVGRVEEHG 
EQLILGTLQD ITERKTAEIE LLNAKLRAEA ASKAKSEFLA NMSHEIRTPL NGILGMLQLM 
HTTRLGAEQA DYADIAIQSG RRLARLLSDM LDLSRIESGK LDIRHVPFQL AAAVQQVVEL 
FLPISLQAGI RLDVRMDPTT PETLLGDIVR VQQVLTNLLG NSFKFTRIGG ITLAVHRLPP 
PHAPACRVLF TISDTGCGIP EDKLGELFEP FTQASNGMRR SHQGAGLGLS ICKRLVHLMG 
GEITIESEEG AGTTACVSLP FTLVPDTGER TEVPDTANAP DLPDVPSVAG VSGMPGAQGA 
APAPRSDAAL PCRILLVEDD PVTQLAVRRM LEKAGHTVTV AGDGRAGLNA LAGGSFDMVL 
MDIQMPTMDG MEAVARIRKG EAGPDRAGIP IVALTAYAME GDRERFMGAG MDAYATKPTD 
MDTLHAVIGR LCGQGQTTRQ G