More than 300 homologs were found in PanDaTox collection
for query gene Pisl_0197 on replicon NC_008701
Organism: Pyrobaculum islandicum DSM 4184



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009073  Pcal_1578  nickel-dependent hydrogenase, large subunit  82.45 
 
 
638 aa  1121    Pyrobaculum calidifontis JCM 11548  Archaea  n/a    normal 
 
 
-
 
NC_009376  Pars_1298  nickel-dependent hydrogenase, large subunit  83.86 
 
 
638 aa  1150    Pyrobaculum arsenaticum DSM 13514  Archaea  normal  normal 
 
 
-
 
NC_010525  Tneu_0407  nickel-dependent hydrogenase large subunit  95.61 
 
 
638 aa  1286    Thermoproteus neutrophilus V24Sta  Archaea  normal  0.781594  normal  0.0807519 
 
 
-
 
NC_008701  Pisl_0197  nickel-dependent hydrogenase, large subunit  100 
 
 
638 aa  1324    Pyrobaculum islandicum DSM 4184  Archaea  normal  normal  0.0283036 
 
 
-
 
NC_008698  Tpen_0592  nickel-dependent hydrogenase, large subunit  50.63 
 
 
596 aa  578  1e-164  Thermofilum pendens Hrk 5  Archaea  normal  n/a   
 
 
-
 
NC_013739  Cwoe_2541  Cytochrome-c3 hydrogenase  33.93 
 
 
593 aa  329  1.0000000000000001e-88  Conexibacter woesei DSM 14684  Bacteria  normal  0.166468  normal  0.411855 
 
 
-
 
NC_014165  Tbis_2625  cytochrome-c3 hydrogenase  32.65 
 
 
600 aa  308  2.0000000000000002e-82  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.712826 
 
 
-
 
NC_013510  Tcur_4594  Cytochrome-c3 hydrogenase  31.71 
 
 
597 aa  298  2e-79  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_2492  hydrogen:quinone oxidoreductase  31.76 
 
 
596 aa  296  9e-79  Frankia sp. EAN1pec  Bacteria  normal  0.44509  normal 
 
 
-
 
NC_013595  Sros_3814  Cytochrome-c3 hydrogenase  32.58 
 
 
602 aa  293  6e-78  Streptosporangium roseum DSM 43021  Bacteria  normal  0.344269  normal  0.0147903 
 
 
-
 
NC_013159  Svir_08120  Ni,Fe-hydrogenase I large subunit  30.88 
 
 
601 aa  293  9e-78  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_007777  Francci3_1942  hydrogen:quinone oxidoreductase  32.81 
 
 
597 aa  292  1e-77  Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_008146  Mmcs_2143  hydrogen:quinone oxidoreductase  31.61 
 
 
598 aa  292  1e-77  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_2189  hydrogen:quinone oxidoreductase  31.61 
 
 
598 aa  292  1e-77  Mycobacterium sp. KMS  Bacteria  normal  normal  0.269515 
 
 
-
 
NC_009077  Mjls_2130  hydrogen:quinone oxidoreductase  31.61 
 
 
598 aa  290  5.0000000000000004e-77  Mycobacterium sp. JLS  Bacteria  normal  0.638664  normal  0.0209583 
 
 
-
 
NC_009440  Msed_0945  Ni Fe-hydrogenase I large subunit-like protein  27.12 
 
 
745 aa  180  5.999999999999999e-44  Metallosphaera sedula DSM 5348  Archaea  normal  normal 
 
 
-
 
NC_009714  CHAB381_0862  quinone-reactive Ni/Fe-hydrogenase large chain  24.85 
 
 
573 aa  155  2e-36  Campylobacter hominis ATCC BAA-381  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_0718  nickel-dependent hydrogenase, large subunit  25.65 
 
 
549 aa  152  2e-35  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.338951 
 
 
-
 
NC_008781  Pnap_1974  nickel-dependent hydrogenase, large subunit  26.19 
 
 
618 aa  139  1e-31  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.688051  normal 
 
 
-
 
NC_012918  GM21_1126  Cytochrome-c3 hydrogenase  26.23 
 
 
559 aa  138  3.0000000000000003e-31  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_011146  Gbem_3136  nickel-dependent hydrogenase large subunit  25.66 
 
 
559 aa  138  4e-31  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_013512  Sdel_1105  nickel-dependent hydrogenase large subunit  26.02 
 
 
584 aa  137  5e-31  Sulfurospirillum deleyianum DSM 6946  Bacteria  normal  n/a   
 
 
-
 
NC_013385  Adeg_1787  nickel-dependent hydrogenase large subunit  26.14 
 
 
481 aa  136  9e-31  Ammonifex degensii KC4  Bacteria  normal  0.993845  n/a   
 
 
-
 
NC_007520  Tcr_2037  nickel-dependent hydrogenase, large subunit  24.81 
 
 
568 aa  135  1.9999999999999998e-30  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_008599  CFF8240_0939  quinone-reactive Ni/Fe-hydrogenase large chain  24.96 
 
 
573 aa  133  9e-30  Campylobacter fetus subsp. fetus 82-40  Bacteria  normal  0.0992433  n/a   
 
 
-
 
NC_010814  Glov_2055  nickel-dependent hydrogenase large subunit  26.07 
 
 
566 aa  133  1.0000000000000001e-29  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_1245  nickel-dependent hydrogenase, large subunit  24.45 
 
 
566 aa  133  1.0000000000000001e-29  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.11159 
 
 
-
 
NC_011830  Dhaf_2742  Hydrogen:quinone oxidoreductase  25.39 
 
 
518 aa  132  2.0000000000000002e-29  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.0000126046  n/a   
 
 
-
 
NC_011769  DvMF_0270  nickel-dependent hydrogenase large subunit  25.08 
 
 
567 aa  132  2.0000000000000002e-29  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.11146 
 
 
-
 
NC_012039  Cla_0713  Ni/Fe-hydrogenase, large subunit  24.77 
 
 
571 aa  131  4.0000000000000003e-29  Campylobacter lari RM2100  Bacteria  normal  n/a   
 
 
-
 
NC_008825  Mpe_A2826  nickel-iron hydrogenase, large subunit  25.92 
 
 
618 aa  131  4.0000000000000003e-29  Methylibium petroleiphilum PM1  Bacteria  normal  0.652434  normal 
 
 
-
 
NC_008700  Sama_1678  hydrogenase large chain  25.16 
 
 
567 aa  130  7.000000000000001e-29  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_009675  Anae109_3520  nickel-dependent hydrogenase large subunit  25.26 
 
 
567 aa  129  1.0000000000000001e-28  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_007404  Tbd_1375  Ni-Fe hydrogenase large chain  25.41 
 
 
596 aa  126  1e-27  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.0200361  normal 
 
 
-
 
NC_009901  Spea_2032  nickel-dependent hydrogenase large subunit  25.57 
 
 
567 aa  126  1e-27  Shewanella pealeana ATCC 700345  Bacteria  normal  0.0709763  n/a   
 
 
-
 
NC_009483  Gura_0873  nickel-dependent hydrogenase, large subunit  24.05 
 
 
569 aa  126  1e-27  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_009802  CCC13826_0100  aminodeoxychorismate lyase  23.83 
 
 
572 aa  126  2e-27  Campylobacter concisus 13826  Bacteria  normal  0.0667384  n/a   
 
 
-
 
NC_013173  Dbac_1969  nickel-dependent hydrogenase large subunit  26.07 
 
 
514 aa  125  2e-27  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.668451  n/a   
 
 
-
 
NC_009707  JJD26997_0459  quinone-reactive Ni/Fe-hydrogenase, large subunit  24.73 
 
 
571 aa  125  2e-27  Campylobacter jejuni subsp. doylei 269.97  Bacteria  unclonable  0.000000000643457  n/a   
 
 
-
 
NC_008787  CJJ81176_1282  quinone-reactive Ni/Fe-hydrogenase, large subunit  25.08 
 
 
571 aa  125  2e-27  Campylobacter jejuni subsp. jejuni 81-176  Bacteria  decreased coverage  0.00216082  n/a   
 
 
-
 
NC_010627  Bphy_7264  nickel-dependent hydrogenase large subunit  25 
 
 
596 aa  125  3e-27  Burkholderia phymatum STM815  Bacteria  normal  normal  0.340015 
 
 
-
 
NC_009831  Ssed_1907  nickel-dependent hydrogenase, large subunit  24.77 
 
 
567 aa  124  4e-27  Shewanella sediminis HAW-EB3  Bacteria  normal  normal  0.022032 
 
 
-
 
NC_010814  Glov_0147  nickel-dependent hydrogenase large subunit  24.85 
 
 
559 aa  124  4e-27  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_1413  hydrogenase 2 large subunit  24.96 
 
 
568 aa  124  6e-27  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_3270  nickel-dependent hydrogenase large subunit  26.86 
 
 
517 aa  123  8e-27  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_003912  CJE1402  quinone-reactive Ni/Fe-hydrogenase, large subunit  24.92 
 
 
571 aa  124  8e-27  Campylobacter jejuni RM1221  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_2531  hydrogenase 2 large subunit  26.03 
 
 
568 aa  123  9.999999999999999e-27  Dickeya dadantii Ech703  Bacteria  normal  0.597514  n/a   
 
 
-
 
NC_013385  Adeg_1231  nickel-dependent hydrogenase large subunit  26.15 
 
 
458 aa  122  9.999999999999999e-27  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_2952  nickel-dependent hydrogenase, large subunit  23.87 
 
 
546 aa  123  9.999999999999999e-27  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal  0.437472 
 
 
-
 
NC_009720  Xaut_2174  nickel-dependent hydrogenase large subunit  25.94 
 
 
604 aa  122  1.9999999999999998e-26  Xanthobacter autotrophicus Py2  Bacteria  hitchhiker  0.0021467  normal  0.160198 
 
 
-
 
NC_008687  Pden_3098  nickel-dependent hydrogenase, large subunit  25.04 
 
 
597 aa  122  1.9999999999999998e-26  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_004347  SO_2098  quinone-reactive Ni/Fe hydrogenase, large subunit  24.66 
 
 
567 aa  122  3e-26  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009438  Sputcn32_2089  nickel-dependent hydrogenase, large subunit  23.96 
 
 
567 aa  121  4.9999999999999996e-26  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
CP001509  ECD_02870  hydrogenase 2, large subunit  25.52 
 
 
567 aa  119  9.999999999999999e-26  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_0702  nickel-dependent hydrogenase large subunit  25.52 
 
 
567 aa  119  9.999999999999999e-26  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_010658  SbBS512_E3421  hydrogenase 2 large subunit  25.52 
 
 
567 aa  119  9.999999999999999e-26  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_3280  hydrogenase 2 large subunit  25.52 
 
 
567 aa  119  9.999999999999999e-26  Escherichia coli SMS-3-5  Bacteria  normal  normal 
 
 
-
 
NC_012892  B21_02819  hypothetical protein  25.52 
 
 
567 aa  119  9.999999999999999e-26  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_3463  hydrogenase 2 large subunit  25.52 
 
 
567 aa  119  9.999999999999999e-26  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A3174  hydrogenase 2 large subunit  25.52 
 
 
567 aa  119  9.999999999999999e-26  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_011149  SeAg_B1633  [Ni/Fe] hydrogenase, large subunit  25.41 
 
 
600 aa  119  9.999999999999999e-26  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_4306  hydrogenase 2 large subunit  25.52 
 
 
567 aa  119  9.999999999999999e-26  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  0.228665  normal 
 
 
-
 
NC_011205  SeD_A1798  [Ni/Fe] hydrogenase, large subunit  25.41 
 
 
600 aa  119  1.9999999999999998e-25  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.570579  normal 
 
 
-
 
NC_011094  SeSA_A1642  [Ni/Fe] hydrogenase, large subunit  25.41 
 
 
600 aa  119  1.9999999999999998e-25  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.251142  normal 
 
 
-
 
NC_011083  SeHA_C1709  [Ni/Fe] hydrogenase large subunit  25.41 
 
 
600 aa  119  1.9999999999999998e-25  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal 
 
 
-
 
NC_013173  Dbac_0766  nickel-dependent hydrogenase large subunit  23.85 
 
 
569 aa  119  1.9999999999999998e-25  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_011080  SNSL254_A1650  [Ni/Fe] hydrogenase large subunit  25.41 
 
 
600 aa  119  1.9999999999999998e-25  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_2156  nickel-dependent hydrogenase, large subunit  24.17 
 
 
567 aa  119  1.9999999999999998e-25  Shewanella sp. MR-7  Bacteria  normal  0.352792  normal  0.370314 
 
 
-
 
NC_008340  Mlg_2028  nickel-dependent hydrogenase, large subunit  24.01 
 
 
595 aa  119  1.9999999999999998e-25  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal 
 
 
-
 
NC_011146  Gbem_1368  nickel-dependent hydrogenase large subunit  25.3 
 
 
571 aa  119  1.9999999999999998e-25  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_1879  nickel-dependent hydrogenase, large subunit  24.17 
 
 
567 aa  119  1.9999999999999998e-25  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_008345  Sfri_2104  nickel-dependent hydrogenase, large subunit  24.73 
 
 
567 aa  117  3.9999999999999997e-25  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_013223  Dret_0266  nickel-dependent hydrogenase large subunit  22.71 
 
 
566 aa  117  5e-25  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.322067  normal 
 
 
-
 
NC_010468  EcolC_0699  hydrogenase 2 large subunit  25.37 
 
 
567 aa  117  6e-25  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_007575  Suden_1435  nickel-dependent hydrogenase, large subunit  23.63 
 
 
577 aa  116  1.0000000000000001e-24  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  0.611833  n/a   
 
 
-
 
NC_009921  Franean1_3404  nickel-dependent hydrogenase large subunit  24.35 
 
 
573 aa  116  1.0000000000000001e-24  Frankia sp. EAN1pec  Bacteria  normal  0.37903  normal 
 
 
-
 
NC_009092  Shew_1764  nickel-dependent hydrogenase, large subunit  24.42 
 
 
568 aa  116  1.0000000000000001e-24  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_1821  nickel-dependent hydrogenase, large subunit  24.09 
 
 
567 aa  115  2.0000000000000002e-24  Shewanella sp. MR-4  Bacteria  normal  0.545248  normal 
 
 
-
 
CP001509  ECD_00976  hydrogenase 1, large subunit  24.85 
 
 
597 aa  115  3e-24  Escherichia coli BL21(DE3)  Bacteria  normal  0.170036  n/a   
 
 
-
 
CP001637  EcDH1_2671  nickel-dependent hydrogenase large subunit  24.85 
 
 
597 aa  115  3e-24  Escherichia coli DH1  Bacteria  hitchhiker  0.00020942  n/a   
 
 
-
 
NC_011205  SeD_A3495  hydrogenase 2 large subunit  24.63 
 
 
567 aa  115  3e-24  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.233634  normal 
 
 
-
 
NC_012892  B21_00983  hypothetical protein  24.85 
 
 
597 aa  115  3e-24  Escherichia coli BL21  Bacteria  normal  0.201249  n/a   
 
 
-
 
NC_009800  EcHS_A1081  hydrogenase 1 large subunit  24.85 
 
 
597 aa  115  3e-24  Escherichia coli HS  Bacteria  normal  0.674487  n/a   
 
 
-
 
NC_011149  SeAg_B3320  hydrogenase 2 large subunit  24.63 
 
 
567 aa  115  3e-24  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.118706  n/a   
 
 
-
 
NC_010498  EcSMS35_2144  hydrogenase 1 large subunit  24.85 
 
 
597 aa  115  3e-24  Escherichia coli SMS-3-5  Bacteria  normal  0.375749  normal  0.757738 
 
 
-
 
NC_011083  SeHA_C3394  hydrogenase 2 large subunit  24.63 
 
 
567 aa  115  3e-24  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal  0.571998 
 
 
-
 
NC_011080  SNSL254_A3400  hydrogenase 2 large subunit  24.63 
 
 
567 aa  115  3e-24  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_009801  EcE24377A_1088  hydrogenase 1 large subunit  24.85 
 
 
597 aa  115  3e-24  Escherichia coli E24377A  Bacteria  hitchhiker  0.000594285  n/a   
 
 
-
 
NC_012918  GM21_2915  nickel-dependent hydrogenase large subunit  25.57 
 
 
571 aa  114  4.0000000000000004e-24  Geobacter sp. M21  Bacteria  n/a    normal  0.289083 
 
 
-
 
NC_011353  ECH74115_1209  hydrogenase 1 large subunit  24.85 
 
 
597 aa  114  4.0000000000000004e-24  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_011094  SeSA_A3329  hydrogenase 2 large subunit  24.48 
 
 
567 aa  114  4.0000000000000004e-24  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_010658  SbBS512_E2342  hydrogenase 1 large subunit  24.21 
 
 
597 aa  114  5e-24  Shigella boydii CDC 3083-94  Bacteria  normal  0.514327  n/a   
 
 
-
 
NC_011769  DvMF_0273  nickel-dependent hydrogenase large subunit  23.91 
 
 
488 aa  114  6e-24  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.328721 
 
 
-
 
NC_009715  CCV52592_1902  quinone-reactive Ni/Fe-hydrogenase large chain  23.72 
 
 
572 aa  114  8.000000000000001e-24  Campylobacter curvus 525.92  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_1888  nickel-dependent hydrogenase large subunit  25.45 
 
 
567 aa  112  2.0000000000000002e-23  Shewanella baltica OS155  Bacteria  normal  0.261784  n/a   
 
 
-
 
NC_009484  Acry_0337  nickel-dependent hydrogenase, large subunit  24.77 
 
 
598 aa  111  4.0000000000000004e-23  Acidiphilium cryptum JF-5  Bacteria  normal  0.0168031  n/a   
 
 
-
 
NC_009475  BBta_p0179  uptake hydrogenase large subunit  23.31 
 
 
570 aa  111  5e-23  Bradyrhizobium sp. BTAi1  Bacteria  n/a    normal 
 
 
-
 
NC_009665  Shew185_1914  nickel-dependent hydrogenase large subunit  25.49 
 
 
567 aa  110  6e-23  Shewanella baltica OS185  Bacteria  normal  0.392356  n/a   
 
 
-
 
NC_009997  Sbal195_1921  nickel-dependent hydrogenase large subunit  25.49 
 
 
567 aa  110  6e-23  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_011663  Sbal223_2405  nickel-dependent hydrogenase large subunit  25.49 
 
 
567 aa  110  6e-23  Shewanella baltica OS223  Bacteria  normal  0.286384  hitchhiker  0.000502851 
 
 
-
 
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