More than 300 homologs were found in PanDaTox collection
for query gene Pden_4839 on replicon NC_008688
Organism: Paracoccus denitrificans PD1222



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008688  Pden_4839  HAD family hydrolase  100 
 
 
224 aa  440  1e-123  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_011369  Rleg2_1449  HAD-superfamily hydrolase, subfamily IA, variant 3  55.05 
 
 
226 aa  206  3e-52  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  decreased coverage  0.0077861  normal 
 
 
-
 
NC_012850  Rleg_1626  HAD-superfamily hydrolase, subfamily IA, variant 3  54.55 
 
 
223 aa  205  5e-52  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.0186201  normal  0.633699 
 
 
-
 
NC_012850  Rleg_1297  HAD-superfamily hydrolase, subfamily IA, variant 3  51.71 
 
 
222 aa  193  2e-48  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.525568  normal 
 
 
-
 
NC_007492  Pfl01_3528  HAD family hydrolase  48.06 
 
 
222 aa  187  1e-46  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.58335  normal  0.428685 
 
 
-
 
NC_010338  Caul_2162  HAD family hydrolase  49.05 
 
 
216 aa  186  2e-46  Caulobacter sp. K31  Bacteria  normal  normal  0.0225096 
 
 
-
 
NC_011369  Rleg2_1208  HAD-superfamily hydrolase, subfamily IA, variant 3  51.79 
 
 
222 aa  184  8e-46  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_009620  Smed_4703  HAD family hydrolase  54.4 
 
 
224 aa  184  1.0000000000000001e-45  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_009667  Oant_2365  HAD family hydrolase  47.8 
 
 
227 aa  181  7e-45  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.491316  n/a   
 
 
-
 
NC_004310  BR0861  HAD superfamily hydrolase  46.33 
 
 
227 aa  179  2e-44  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_009505  BOV_0852  HAD superfamily hydrolase  46.33 
 
 
227 aa  179  2e-44  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_009436  Ent638_2837  putative phosphatase  45.63 
 
 
219 aa  166  2e-40  Enterobacter sp. 638  Bacteria  normal  0.390104  normal 
 
 
-
 
NC_008009  Acid345_3929  HAD family hydrolase  48.84 
 
 
224 aa  163  2.0000000000000002e-39  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.436954  normal  0.193081 
 
 
-
 
NC_010505  Mrad2831_3383  HAD family hydrolase  46.38 
 
 
221 aa  157  1e-37  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.603016  normal  0.0568392 
 
 
-
 
NC_013093  Amir_3098  HAD-superfamily hydrolase, subfamily IA, variant 3  53.57 
 
 
214 aa  157  2e-37  Actinosynnema mirum DSM 43827  Bacteria  normal  0.206377  n/a   
 
 
-
 
NC_013521  Sked_32600  haloacid dehalogenase superfamily enzyme, subfamily IA  49.74 
 
 
222 aa  156  3e-37  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.158524  normal 
 
 
-
 
NC_009832  Spro_3313  putative phosphatase  44.57 
 
 
218 aa  154  1e-36  Serratia proteamaculans 568  Bacteria  hitchhiker  0.00109043  normal 
 
 
-
 
NC_014151  Cfla_0403  HAD-superfamily hydrolase, subfamily IA, variant 3  49.72 
 
 
215 aa  152  2.9999999999999998e-36  Cellulomonas flavigena DSM 20109  Bacteria  normal  normal 
 
 
-
 
NC_013174  Jden_2195  HAD-superfamily hydrolase, subfamily IA, variant 3  40.95 
 
 
224 aa  148  8e-35  Jonesia denitrificans DSM 20603  Bacteria  normal  normal 
 
 
-
 
NC_010465  YPK_1554  putative phosphatase  45.11 
 
 
218 aa  147  1.0000000000000001e-34  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A1822  putative phosphatase  45.11 
 
 
218 aa  147  1.0000000000000001e-34  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_009708  YpsIP31758_1446  putative phosphatase  45.11 
 
 
218 aa  147  1.0000000000000001e-34  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_008541  Arth_0649  HAD family hydrolase  50.25 
 
 
234 aa  145  4.0000000000000006e-34  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_1388  putative phosphatase  41.85 
 
 
218 aa  140  9.999999999999999e-33  Dickeya zeae Ech1591  Bacteria  hitchhiker  0.00329661  n/a   
 
 
-
 
CP001509  ECD_02218  predicted hydrolase or phosphatase  41.26 
 
 
216 aa  139  1.9999999999999998e-32  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_1363  HAD-superfamily hydrolase, subfamily IA, variant 3  41.26 
 
 
216 aa  139  1.9999999999999998e-32  Escherichia coli DH1  Bacteria  normal  0.0110117  n/a   
 
 
-
 
NC_010468  EcolC_1359  putative phosphatase  41.26 
 
 
216 aa  139  1.9999999999999998e-32  Escherichia coli ATCC 8739  Bacteria  normal  normal  0.348521 
 
 
-
 
NC_012892  B21_02178  hypothetical protein  41.26 
 
 
216 aa  139  1.9999999999999998e-32  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A2442  putative phosphatase  41.26 
 
 
216 aa  139  1.9999999999999998e-32  Escherichia coli HS  Bacteria  normal  0.647489  n/a   
 
 
-
 
NC_010498  EcSMS35_2448  putative phosphatase  41.26 
 
 
216 aa  139  1.9999999999999998e-32  Escherichia coli SMS-3-5  Bacteria  normal  0.745831  normal 
 
 
-
 
NC_009801  EcE24377A_2586  putative phosphatase  41.26 
 
 
216 aa  139  3e-32  Escherichia coli E24377A  Bacteria  normal  0.118565  n/a   
 
 
-
 
NC_011353  ECH74115_3432  putative phosphatase  41.26 
 
 
216 aa  139  3e-32  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  0.166368  normal 
 
 
-
 
NC_012917  PC1_2777  putative phosphatase  38.35 
 
 
224 aa  139  3.9999999999999997e-32  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.779945  n/a   
 
 
-
 
NC_009664  Krad_1478  HAD-superfamily hydrolase, subfamily IA, variant 3  48.15 
 
 
220 aa  137  8.999999999999999e-32  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.0104021  normal  0.265718 
 
 
-
 
NC_013421  Pecwa_1487  putative phosphatase  39.38 
 
 
224 aa  137  8.999999999999999e-32  Pectobacterium wasabiae WPP163  Bacteria  normal  0.751605  n/a   
 
 
-
 
NC_010658  SbBS512_E2669  putative phosphatase  44.02 
 
 
216 aa  136  3.0000000000000003e-31  Shigella boydii CDC 3083-94  Bacteria  normal  0.91748  n/a   
 
 
-
 
NC_014158  Tpau_3077  HAD-superfamily hydrolase, subfamily IA, variant 3  51.25 
 
 
212 aa  135  5e-31  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.79741  n/a   
 
 
-
 
NC_011205  SeD_A2682  putative phosphatase  40.78 
 
 
219 aa  134  9.999999999999999e-31  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal 
 
 
-
 
NC_011080  SNSL254_A2519  putative phosphatase  40.78 
 
 
219 aa  134  9.999999999999999e-31  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.0435339  normal  0.279321 
 
 
-
 
NC_011083  SeHA_C2574  putative phosphatase  40.78 
 
 
219 aa  134  9.999999999999999e-31  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal 
 
 
-
 
NC_011094  SeSA_A2562  putative phosphatase  40.78 
 
 
219 aa  134  9.999999999999999e-31  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.166759  normal 
 
 
-
 
NC_011149  SeAg_B2474  putative phosphatase  40.78 
 
 
219 aa  134  9.999999999999999e-31  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.764335  n/a   
 
 
-
 
NC_013947  Snas_3307  HAD-superfamily hydrolase subfamily IA, variant 3  50.54 
 
 
735 aa  131  9e-30  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.081208  normal 
 
 
-
 
NC_013235  Namu_4663  HAD-superfamily hydrolase, subfamily IA, variant 3  42.35 
 
 
215 aa  129  4.0000000000000003e-29  Nakamurella multipartita DSM 44233  Bacteria  normal  0.828051  normal 
 
 
-
 
NC_012880  Dd703_2556  putative phosphatase  40.44 
 
 
218 aa  129  4.0000000000000003e-29  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_009784  VIBHAR_06436  hypothetical protein  32.39 
 
 
214 aa  127  2.0000000000000002e-28  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013235  Namu_3972  HAD-superfamily hydrolase, subfamily IA, variant 3  45.58 
 
 
379 aa  125  6e-28  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.00807242  normal  0.0158039 
 
 
-
 
NC_014210  Ndas_3540  HAD-superfamily hydrolase, subfamily IA, variant 3  43.5 
 
 
209 aa  119  3e-26  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.983537  normal  0.491386 
 
 
-
 
NC_013739  Cwoe_3319  HAD-superfamily hydrolase, subfamily IA, variant 3  42.01 
 
 
224 aa  115  6e-25  Conexibacter woesei DSM 14684  Bacteria  normal  0.168668  normal 
 
 
-
 
NC_009953  Sare_4784  HAD family hydrolase  44.63 
 
 
215 aa  112  5e-24  Salinispora arenicola CNS-205  Bacteria  normal  0.625758  decreased coverage  0.0000248953 
 
 
-
 
NC_009380  Strop_4343  HAD family hydrolase  44.72 
 
 
231 aa  109  3e-23  Salinispora tropica CNB-440  Bacteria  normal  0.195907  normal 
 
 
-
 
NC_006682  CNM01370  conserved hypothetical protein  33.96 
 
 
250 aa  108  6e-23  Cryptococcus neoformans var. neoformans JEC21  Eukaryota  normal  0.647335  n/a   
 
 
-
 
NC_006685  CNC02470  phosphatase, putative  33.16 
 
 
411 aa  103  3e-21  Cryptococcus neoformans var. neoformans JEC21  Eukaryota  normal  n/a   
 
 
-
 
NC_013172  Bfae_10440  haloacid dehalogenase superfamily protein, subfamily IA, variant 3 with third motif having DD or ED  37.17 
 
 
242 aa  102  4e-21  Brachybacterium faecium DSM 4810  Bacteria  hitchhiker  0.00307768  n/a   
 
 
-
 
NC_013730  Slin_0136  HAD-superfamily hydrolase, subfamily IA, variant 3  32.66 
 
 
225 aa  96.7  2e-19  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_006682  CNM01280  glycerol-1-phosphatase, putative  37.11 
 
 
237 aa  95.1  7e-19  Cryptococcus neoformans var. neoformans JEC21  Eukaryota  normal  0.370898  n/a   
 
 
-
 
NC_010571  Oter_1593  beta-phosphoglucomutase family hydrolase  36.7 
 
 
202 aa  93.6  2e-18  Opitutus terrae PB90-1  Bacteria  normal  normal  0.113259 
 
 
-
 
BN001308  ANIA_01216  Glycerol-3-phosphate phosphatasePutative uncharacterized protein ; [Source:UniProtKB/TrEMBL;Acc:Q9UVC6]  32.45 
 
 
236 aa  89.7  4e-17  Aspergillus nidulans FGSC A4  Eukaryota  hitchhiker  0.00109898  normal  0.137881 
 
 
-
 
NC_007333  Tfu_2488  HAD family hydrolase  36.32 
 
 
237 aa  88.2  8e-17  Thermobifida fusca YX  Bacteria  normal  0.271509  n/a   
 
 
-
 
NC_012791  Vapar_3792  HAD-superfamily hydrolase, subfamily IA, variant 3  32.13 
 
 
229 aa  87.4  1e-16  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_010655  Amuc_1649  beta-phosphoglucomutase family hydrolase  33.86 
 
 
202 aa  85.1  9e-16  Akkermansia muciniphila ATCC BAA-835  Bacteria  normal  normal  0.382766 
 
 
-
 
NC_013173  Dbac_1634  HAD-superfamily hydrolase, subfamily IA, variant 3  36.08 
 
 
221 aa  81.3  0.00000000000001  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.0501975  n/a   
 
 
-
 
NC_009042  PICST_42440  DL-glycerol-3-phosphatase  32.35 
 
 
253 aa  79.7  0.00000000000004  Scheffersomyces stipitis CBS 6054  Eukaryota  normal  0.0672692  normal  0.151042 
 
 
-
 
NC_009363  OSTLU_10396  predicted protein  34.08 
 
 
168 aa  76.6  0.0000000000002  Ostreococcus lucimarinus CCE9901  Eukaryota  normal  normal 
 
 
-
 
NC_013947  Snas_4498  HAD-superfamily hydrolase subfamily IA, variant 3  32.54 
 
 
223 aa  76.3  0.0000000000003  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.511661  normal  0.0143777 
 
 
-
 
NC_009784  VIBHAR_05174  phosphoglycolate phosphatase  32.62 
 
 
256 aa  74.7  0.000000000001  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_004116  SAG0181  HAD superfamily hydrolase  31.55 
 
 
214 aa  73.6  0.000000000002  Streptococcus agalactiae 2603V/R  Bacteria  normal  n/a   
 
 
-
 
NC_010003  Pmob_0452  HAD family hydrolase  26.29 
 
 
221 aa  73.2  0.000000000003  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_0267  HAD-superfamily hydrolase, subfamily IA, variant 3  30.98 
 
 
220 aa  73.2  0.000000000003  Spirosoma linguale DSM 74  Bacteria  normal  0.583067  normal  0.103324 
 
 
-
 
NC_007512  Plut_2091  Beta-phosphoglucomutase hydrolase  29.41 
 
 
233 aa  72.8  0.000000000004  Chlorobium luteolum DSM 273  Bacteria  normal  normal 
 
 
-
 
NC_010831  Cphamn1_2486  beta-phosphoglucomutase family hydrolase  29.26 
 
 
232 aa  72  0.000000000006  Chlorobium phaeobacteroides BS1  Bacteria  normal  0.24904  normal 
 
 
-
 
NC_010524  Lcho_1765  HAD family hydrolase  33.03 
 
 
236 aa  72  0.000000000006  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.0140115 
 
 
-
 
NC_008726  Mvan_3473  HAD family hydrolase  33.81 
 
 
243 aa  71.6  0.000000000008  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_014148  Plim_3898  HAD-superfamily hydrolase, subfamily IA, variant 3  33.5 
 
 
233 aa  71.6  0.000000000009  Planctomyces limnophilus DSM 3776  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_20940  haloacid dehalogenase superfamily enzyme, subfamily IA  35.71 
 
 
273 aa  71.6  0.00000000001  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.650807 
 
 
-
 
NC_012852  Rleg_6064  HAD-superfamily hydrolase, subfamily IA, variant 3  32.79 
 
 
215 aa  71.2  0.00000000001  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.219512  normal 
 
 
-
 
NC_012912  Dd1591_0985  fructose-1-phosphatase  30.27 
 
 
188 aa  71.6  0.00000000001  Dickeya zeae Ech1591  Bacteria  decreased coverage  0.000117667  n/a   
 
 
-
 
NC_013595  Sros_7385  HAD-superfamily hydrolase, subfamily IA  31.98 
 
 
248 aa  71.2  0.00000000001  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_009338  Mflv_3054  HAD family hydrolase  31.6 
 
 
224 aa  70.9  0.00000000002  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.751068  normal  0.223571 
 
 
-
 
NC_008009  Acid345_3787  HAD family hydrolase  29.81 
 
 
238 aa  70.1  0.00000000002  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.85061  normal 
 
 
-
 
NC_007777  Francci3_2637  HAD family hydrolase  33.87 
 
 
286 aa  69.7  0.00000000003  Frankia sp. CcI3  Bacteria  normal  0.403398  normal  0.292856 
 
 
-
 
NC_013457  VEA_001299  CbbY family protein  32.61 
 
 
216 aa  69.7  0.00000000003  Vibrio sp. Ex25  Bacteria  normal  0.916657  n/a   
 
 
-
 
NC_013595  Sros_5916  HAD family hydrolase  34.29 
 
 
218 aa  69.7  0.00000000004  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0345843  normal  0.0351614 
 
 
-
 
NC_013131  Caci_2412  HAD-superfamily hydrolase, subfamily IA, variant 3  32.84 
 
 
222 aa  69.3  0.00000000005  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013457  VEA_000391  2-deoxyglucose-6-phosphate hydrolase YniC  28.57 
 
 
218 aa  68.9  0.00000000006  Vibrio sp. Ex25  Bacteria  normal  0.0106831  n/a   
 
 
-
 
NC_008146  Mmcs_3148  HAD family hydrolase  33.88 
 
 
228 aa  68.6  0.00000000008  Mycobacterium sp. MCS  Bacteria  normal  0.0274068  n/a   
 
 
-
 
NC_008705  Mkms_3210  HAD family hydrolase  33.88 
 
 
228 aa  68.6  0.00000000008  Mycobacterium sp. KMS  Bacteria  normal  0.742759  normal  0.278604 
 
 
-
 
NC_009077  Mjls_3160  HAD family hydrolase  33.88 
 
 
228 aa  68.6  0.00000000008  Mycobacterium sp. JLS  Bacteria  normal  0.0720917  normal  0.533727 
 
 
-
 
NC_006691  CNF03180  hypothetical protein  33.6 
 
 
325 aa  68.2  0.00000000009  Cryptococcus neoformans var. neoformans JEC21  Eukaryota  normal  n/a   
 
 
-
 
NC_007514  Cag_0071  Beta-phosphoglucomutase hydrolase  29.08 
 
 
234 aa  68.2  0.00000000009  Chlorobium chlorochromatii CaD3  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_4817  HAD-superfamily hydrolase, subfamily IA, variant 3  32.86 
 
 
235 aa  68.6  0.00000000009  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.821962  n/a   
 
 
-
 
NC_009456  VC0395_0605  haloacid dehalogenase/epoxide hydrolase family protein  28.5 
 
 
212 aa  68.2  0.00000000009  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_011059  Paes_2237  beta-phosphoglucomutase family hydrolase  29.41 
 
 
254 aa  68.2  0.00000000009  Prosthecochloris aestuarii DSM 271  Bacteria  normal  0.202357  normal 
 
 
-
 
NC_013061  Phep_1395  HAD-superfamily hydrolase, subfamily IA, variant 3  28.95 
 
 
201 aa  67.4  0.0000000001  Pedobacter heparinus DSM 2366  Bacteria  normal  normal  0.0347939 
 
 
-
 
NC_013169  Ksed_13910  haloacid dehalogenase superfamily protein, subfamily IA, variant 3 with third motif having DD or ED  33.64 
 
 
232 aa  67.8  0.0000000001  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.491881  normal 
 
 
-
 
NC_009428  Rsph17025_1679  HAD family hydrolase  35.68 
 
 
228 aa  67  0.0000000002  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.329871  normal 
 
 
-
 
NC_009664  Krad_1843  HAD-superfamily hydrolase, subfamily IA, variant 3  46.67 
 
 
241 aa  67  0.0000000002  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.101722  normal 
 
 
-
 
NC_009441  Fjoh_1356  HAD family hydrolase  27.18 
 
 
221 aa  67  0.0000000002  Flavobacterium johnsoniae UW101  Bacteria  normal  0.14421  n/a   
 
 
-
 
NC_007005  Psyr_0131  HAD family hydrolase  30.81 
 
 
224 aa  66.6  0.0000000003  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_008709  Ping_3528  HAD family hydrolase  28.31 
 
 
222 aa  66.6  0.0000000003  Psychromonas ingrahamii 37  Bacteria  normal  0.894258  hitchhiker  0.00350401 
 
 
-
 
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