| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3792 |
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| Symbol | |
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| ID | 7970952 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 4007780 |
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| End bp | 4008469 |
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| Gene Length | 690 bp |
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| Protein Length | 229 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644794378 |
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| Product | HAD-superfamily hydrolase, subfamily IA, variant 3 |
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| Protein accession | YP_002945673 |
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| Protein GI | 239816763 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0637] Predicted phosphatase/phosphohexomutase |
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| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR02009] beta-phosphoglucomutase family hydrolase |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAGCCTGA AGCACGGGAA GGTCGAAGCC TTCATCTTCG ACATGGACGG CACCATGATC
GACTCCATGC CCTGGCATGC GCGCTCGTGG GTGGAGTTTG TCGAACGCCA CGGCCTGAAG
CTCGATGTGA CCGACATCCT TGCGCGCACC ACGGGCCGCA CCGGCGCCGA GTGCATGCGC
GAATTGTTCC AGCGCGAGCT TTCCGACGAC GAGTGCCTGC GCCTGGTGCA CGAGAAGGAA
GAAATCTACC GCGCCATGTT CAGCGACAAC TTCACCGAAG TGGCCGGCTT CACCGCCTTT
GCCAAGGCCG CCGTGGCGCG CGGCCTGAAG GTGGCCGTGG GCACCGCCGG CGACCGGCAC
AACATCGAGT TTGCGATGTC GCGCCTGAAG ATGGACCCGC TGCCGCTGGC CATCGTCGGC
GGCGACGAAG GCTTTGCCGG CAAGCCCACG CCCGAGATCT TTCTGGAAGC CGCGCGCCGC
ATCGGCGTGG CGCCCGAGCG CTGCATCGTT TTTGAAGATG CCCCCTTCGG CATCGAGGCC
GCGCGCCGCG GCGGCATGCG TGCCGTGGCG GTGTGCAGCA CCCATACCGC CGCCGAGCTT
GCCGGCCCCC ATGTGATTGC CGCGGTTCGC GACTACGACG AACTCGCCCA TTCGAATTTT
CTGGAGACAC TCGATGCTGC TGCAGCGTGA
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| Protein sequence | MSLKHGKVEA FIFDMDGTMI DSMPWHARSW VEFVERHGLK LDVTDILART TGRTGAECMR
ELFQRELSDD ECLRLVHEKE EIYRAMFSDN FTEVAGFTAF AKAAVARGLK VAVGTAGDRH
NIEFAMSRLK MDPLPLAIVG GDEGFAGKPT PEIFLEAARR IGVAPERCIV FEDAPFGIEA
ARRGGMRAVA VCSTHTAAEL AGPHVIAAVR DYDELAHSNF LETLDAAAA
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