| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_4839 |
|---|
| Symbol | |
|---|
| ID | 4583400 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Paracoccus denitrificans PD1222 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008688 |
|---|
| Strand | - |
|---|
| Start bp | 338830 |
|---|
| End bp | 339504 |
|---|
| Gene Length | 675 bp |
|---|
| Protein Length | 224 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 639772142 |
|---|
| Product | HAD family hydrolase |
|---|
| Protein accession | YP_918595 |
|---|
| Protein GI | 119387561 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0637] Predicted phosphatase/phosphohexomutase |
|---|
| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGAAGCACG CCCCTGCAAG CTACGCGGCA TTCCTGTTCG ACATGGATGG AACGCTGCTG
ACGTCGATCC CGGTCGTCGA GCGGGTCTGG ACCGAATGGG CGCGCCGTGT CGGTGTGCCG
GTCGCCGATG TCCTTGCCTA TCTGCACGGC CGCCGCGCCG TCGACACCGT TCGCCGTTTC
GCCCCGCCGC ATGTGCTTAT CGATGAAGAG GTCGCCTGGG TCGAGGCACG CGAGATCGAG
GATGTCGATG GGGTCGTCGC AATCGCAGGC GCTGTCGAAC TGCTTGCGTC GCTTGCGCCC
GAACGATGGG CTGTCGTGAC CTCGGCAAGC CGCAAGCTTG CGCTGCGCCG CATGGAGGCC
GCGGGACTTC CGCTGCCCCG GTTCATGGTC ACCTCGGACG ACGTCTCGCG AGGCAAGCCG
GACCCGGAAG GCTATCGCCG GGGGGCCGGG CTTCTGGGCG TGGATATCGC CCGCTGCCTG
GTTTTCGAGG ATACGGAAGC CGGTCTGCTG GCCGGGCGGG CTGCGGGGGC GCAGGTGATC
CGTATCGCAG GGCCGCATAC TGCGCCTCAG GGCGTGGGTG TGCCGACGAT CAGCGACTAC
GATGGGCTTC GTGTCCTGTC CCGCCCCGAT GGCATGACGC TGAGCTGCGC CAGCATGGGC
CCCGCCGTCC CCTGA
|
|---|
| Protein sequence | MKHAPASYAA FLFDMDGTLL TSIPVVERVW TEWARRVGVP VADVLAYLHG RRAVDTVRRF
APPHVLIDEE VAWVEAREIE DVDGVVAIAG AVELLASLAP ERWAVVTSAS RKLALRRMEA
AGLPLPRFMV TSDDVSRGKP DPEGYRRGAG LLGVDIARCL VFEDTEAGLL AGRAAGAQVI
RIAGPHTAPQ GVGVPTISDY DGLRVLSRPD GMTLSCASMG PAVP
|
|---|
| |