Gene VC0395_0605 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVC0395_0605 
Symbol 
ID5134825 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio cholerae O395 
KingdomBacteria 
Replicon accessionNC_009456 
Strand
Start bp658279 
End bp658917 
Gene Length639 bp 
Protein Length212 aa 
Translation table11 
GC content48% 
IMG OID640530927 
Producthaloacid dehalogenase/epoxide hydrolase family protein 
Protein accessionYP_001215444 
Protein GI147671799 
COG category[R] General function prediction only 
COG ID[COG0637] Predicted phosphatase/phosphohexomutase 
TIGRFAM ID[TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR02009] beta-phosphoglucomutase family hydrolase 


Plasmid Coverage information

Num covering plasmid clones47 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACAAATT TATTACAAAA AATTGGAGAT GCTGTGACTG TTGTCAACTT TAGCCTTTAT 
GAAGGATTCA TATTTGATAT GGATGGAACC CTGCTTGATA CCATGCCTGC GCATTTAGCC
GCTTGGGAAG CGACGGCGAA GCATTTTGAC TTCCCATTTG ATGCCCAGTG GCTCTATGGA
TTAGGTGGGA TGCCAAGTGC AAAAATTACG ACGCACATCA ATAAAAAATT AGGCTTGGCG
CTCGATCCCG ATCGCGTCGC AGCCTACAAA ATGGATTGGT TTGCCAGCAT GGGGCTGCAA
GCGGAAGTGA TCCCCGCCAC CTATGAATTA CTCTACCAAT GGCAGGGTAA GAAGAAAATG
GCAATAGGGA CGGGGAGCCA ACGTGATAGC GCGCTGCGTT TATTAAGTAA TGCGCAGGTG
TTGGATAAAT TTGATGCAGT TGTGACGGCC AGCGATGTGC AACAGCACAA ACCGCACCCC
GAAACCTTTC TGATGGCGTG TGAGCAACTC GGCTTGACAC CTAAACAGTG TTTGGTGTTT
GAAGATACCC AATTAGGACT TCAGGCAGCG CACGCGGGTG GGATGGATTG CATGCTAGTG
ACCGAGCAAG GATTGGTTTT CTACCCCTTT GCTCATTGA
 
Protein sequence
MTNLLQKIGD AVTVVNFSLY EGFIFDMDGT LLDTMPAHLA AWEATAKHFD FPFDAQWLYG 
LGGMPSAKIT THINKKLGLA LDPDRVAAYK MDWFASMGLQ AEVIPATYEL LYQWQGKKKM
AIGTGSQRDS ALRLLSNAQV LDKFDAVVTA SDVQQHKPHP ETFLMACEQL GLTPKQCLVF
EDTQLGLQAA HAGGMDCMLV TEQGLVFYPF AH