| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_3098 |
|---|
| Symbol | |
|---|
| ID | 8327288 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Actinosynnema mirum DSM 43827 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013093 |
|---|
| Strand | - |
|---|
| Start bp | 3576475 |
|---|
| End bp | 3577119 |
|---|
| Gene Length | 645 bp |
|---|
| Protein Length | 214 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 78% |
|---|
| IMG OID | 644943618 |
|---|
| Product | HAD-superfamily hydrolase, subfamily IA, variant 3 |
|---|
| Protein accession | YP_003100858 |
|---|
| Protein GI | 256377198 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0637] Predicted phosphatase/phosphohexomutase |
|---|
| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.206377 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGGCGG TGTCCTGCGC GGCGCTGCTG TTCGACTGCG ACGGCGTGCT CGTGGACTCC
GAGGCGAGTG TGACGAGCGC GTGGACCCGG TGGGCGCGCG AGCTGGGGCT GGACCCGGAC
GCGGTGATGG CCACCGTGCA CGGCAGGCGG GCGGTCGACA CCGTGGCGCT GCACGTGGAG
CAGGCGCGGC GGGCCGAGGC GGTGGCGATG ATCGACGCGT TCGAGCTGGC CGAGGTGGGC
GCCACCACCG CGATCCCCGG CGCGGCGGAG CTGCTCGCGT CGCTGCCGCC GGACCGCTGG
GCCACCGTCA CCTCCGGCAA GCGCGACCTG GCCACCGCCC GCCTGCGCGC CGCCGGGCTG
CCGGTGCCGC GCGCGCTCGT GACCGCCGGT GACGTCGCCA GCGGCAAGCC GCACCCGGAG
GGCTACCTGG CCGGGGCGCG GCTGCTCGGC GTGGACGCGT CGCGGTGCGC GGTGTTCGAG
GACGTGCCGG TGGGCGTGCG CGCCGGGCGG TCGGCGGGCG CCGGGGTCGT GGTGGGGGTG
GGCGGACGGG CGTTCGGCGG GGACCGGCCG GACGTGGTGG TGCCGGACCT GCGCGCCGTC
CGCTGGACCG GCGAGGGCCT CGAACTGGCG GCCGGGATCG GCTGA
|
|---|
| Protein sequence | MTAVSCAALL FDCDGVLVDS EASVTSAWTR WARELGLDPD AVMATVHGRR AVDTVALHVE
QARRAEAVAM IDAFELAEVG ATTAIPGAAE LLASLPPDRW ATVTSGKRDL ATARLRAAGL
PVPRALVTAG DVASGKPHPE GYLAGARLLG VDASRCAVFE DVPVGVRAGR SAGAGVVVGV
GGRAFGGDRP DVVVPDLRAV RWTGEGLELA AGIG
|
|---|
| |