More than 300 homologs were found in PanDaTox collection
for query gene PSPTO_1334 on replicon NC_004578
Organism: Pseudomonas syringae pv. tomato str. DC3000



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_004578  PSPTO_1334  methyl-accepting chemotaxis protein  100 
 
 
550 aa  1083    Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_1150  chemotaxis sensory transducer  90.93 
 
 
551 aa  985    Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_0447  chemotaxis sensory transducer  62.4 
 
 
541 aa  407  1.0000000000000001e-112  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_0466  methyl-accepting chemotaxis protein  63.92 
 
 
541 aa  390  1e-107  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_4706  histidine kinase, HAMP region: chemotaxis sensory transducer  66.35 
 
 
541 aa  382  1e-105  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_0317  methyl-accepting chemotaxis sensory transducer  61.48 
 
 
541 aa  374  1e-102  Pseudomonas putida KT2440  Bacteria  normal  0.365849  decreased coverage  0.0000342214 
 
 
-
 
NC_010501  PputW619_4890  methyl-accepting chemotaxis sensory transducer  58.1 
 
 
541 aa  373  1e-102  Pseudomonas putida W619  Bacteria  normal  0.452969  normal  0.355365 
 
 
-
 
NC_009512  Pput_0339  methyl-accepting chemotaxis sensory transducer  61.48 
 
 
541 aa  373  1e-102  Pseudomonas putida F1  Bacteria  normal  0.722367  normal 
 
 
-
 
NC_010322  PputGB1_0340  methyl-accepting chemotaxis sensory transducer  61.3 
 
 
541 aa  367  1e-100  Pseudomonas putida GB-1  Bacteria  normal  0.582352  normal 
 
 
-
 
NC_007005  Psyr_3114  histidine kinase, HAMP region: chemotaxis sensory transducer  41.26 
 
 
541 aa  349  8e-95  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.860602  normal 
 
 
-
 
NC_007492  Pfl01_2907  chemotaxis sensory transducer  60.83 
 
 
541 aa  346  7e-94  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.300582 
 
 
-
 
NC_007492  Pfl01_4833  chemotaxis sensory transducer  42.09 
 
 
541 aa  342  1e-92  Pseudomonas fluorescens Pf0-1  Bacteria  hitchhiker  0.000956827  normal  0.082646 
 
 
-
 
NC_007005  Psyr_0868  histidine kinase, HAMP region: chemotaxis sensory transducer  46.88 
 
 
546 aa  339  9e-92  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.872643 
 
 
-
 
NC_008463  PA14_43710  putative methyl-accepting chemotaxis transducer  57.55 
 
 
541 aa  338  9.999999999999999e-92  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_2471  methyl-accepting chemotaxis sensory transducer  53.59 
 
 
425 aa  338  1.9999999999999998e-91  Pseudomonas mendocina ymp  Bacteria  normal  0.817651  normal 
 
 
-
 
NC_009656  PSPA7_3666  chemotaxis transducer  57.26 
 
 
541 aa  337  3.9999999999999995e-91  Pseudomonas aeruginosa PA7  Bacteria  normal  0.260935  n/a   
 
 
-
 
NC_004578  PSPTO_3279  methyl-accepting chemotaxis protein  41.92 
 
 
541 aa  333  3e-90  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.149652  n/a   
 
 
-
 
NC_009665  Shew185_0897  methyl-accepting chemotaxis sensory transducer  48.36 
 
 
541 aa  333  7.000000000000001e-90  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_0931  methyl-accepting chemotaxis sensory transducer  48.36 
 
 
541 aa  331  2e-89  Shewanella baltica OS195  Bacteria  normal  normal  0.476721 
 
 
-
 
NC_009052  Sbal_3441  methyl-accepting chemotaxis sensory transducer  48.13 
 
 
541 aa  331  3e-89  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_3577  methyl-accepting chemotaxis protein  49.19 
 
 
542 aa  327  4.0000000000000003e-88  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_1630  chemotaxis sensory transducer  48.77 
 
 
541 aa  327  4.0000000000000003e-88  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.0250136 
 
 
-
 
NC_011663  Sbal223_0921  methyl-accepting chemotaxis sensory transducer  47.79 
 
 
541 aa  327  5e-88  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_4266  chemotaxis sensory transducer  51.07 
 
 
546 aa  324  2e-87  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.261421  normal 
 
 
-
 
NC_009656  PSPA7_4141  chemotaxis transducer  54.44 
 
 
541 aa  319  7.999999999999999e-86  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_3348  histidine kinase, HAMP region: chemotaxis sensory transducer  53.98 
 
 
542 aa  317  4e-85  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.946905  normal  0.024921 
 
 
-
 
NC_007005  Psyr_3351  histidine kinase, HAMP region: chemotaxis sensory transducer  52.71 
 
 
570 aa  314  2.9999999999999996e-84  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.0540062  normal  0.0241334 
 
 
-
 
NC_004578  PSPTO_3580  methyl-accepting chemotaxis protein  52.99 
 
 
546 aa  311  1e-83  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_48030  putative methyl-accepting chemotaxis transducer  53.82 
 
 
541 aa  311  2e-83  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.478475 
 
 
-
 
NC_010501  PputW619_2263  methyl-accepting chemotaxis sensory transducer  48.2 
 
 
541 aa  310  2.9999999999999997e-83  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_2634  histidine kinase, HAMP region: chemotaxis sensory transducer  51.14 
 
 
542 aa  309  6.999999999999999e-83  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.917034  normal 
 
 
-
 
NC_004578  PSPTO_4541  methyl-accepting chemotaxis protein  40 
 
 
541 aa  308  2.0000000000000002e-82  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.726322  n/a   
 
 
-
 
NC_010322  PputGB1_2268  methyl-accepting chemotaxis sensory transducer  41.67 
 
 
541 aa  308  2.0000000000000002e-82  Pseudomonas putida GB-1  Bacteria  normal  0.255239  normal 
 
 
-
 
NC_007005  Psyr_1491  histidine kinase, HAMP region: chemotaxis sensory transducer  44.16 
 
 
539 aa  307  3e-82  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_4624  methyl-accepting chemotaxis protein  44.16 
 
 
539 aa  306  5.0000000000000004e-82  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.140064  n/a   
 
 
-
 
NC_009512  Pput_2091  methyl-accepting chemotaxis sensory transducer  51.4 
 
 
541 aa  306  6e-82  Pseudomonas putida F1  Bacteria  normal  0.596764  normal 
 
 
-
 
NC_004578  PSPTO_5569  methyl-accepting chemotaxis protein  39.47 
 
 
541 aa  301  3e-80  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_1418  chemotaxis sensory transducer  53.61 
 
 
541 aa  297  3e-79  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_2643  methyl-accepting chemotaxis sensory transducer  47.39 
 
 
550 aa  296  9e-79  Pseudomonas putida KT2440  Bacteria  normal  0.0855376  normal 
 
 
-
 
NC_010501  PputW619_2593  methyl-accepting chemotaxis sensory transducer  50.28 
 
 
540 aa  295  1e-78  Pseudomonas putida W619  Bacteria  normal  normal  0.591477 
 
 
-
 
NC_009512  Pput_2149  methyl-accepting chemotaxis sensory transducer  47.15 
 
 
541 aa  295  2e-78  Pseudomonas putida F1  Bacteria  normal  0.608007  normal 
 
 
-
 
NC_007005  Psyr_4218  histidine kinase, HAMP region: chemotaxis sensory transducer  50.85 
 
 
541 aa  295  2e-78  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.599163 
 
 
-
 
NC_007005  Psyr_2109  histidine kinase, HAMP region: chemotaxis sensory transducer  51.32 
 
 
539 aa  287  4e-76  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.950044  normal  0.0787865 
 
 
-
 
NC_009438  Sputcn32_1438  methyl-accepting chemotaxis sensory transducer  47.06 
 
 
540 aa  284  3.0000000000000004e-75  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_3184  methyl-accepting chemotaxis sensory transducer  51.9 
 
 
541 aa  282  9e-75  Pseudomonas putida GB-1  Bacteria  normal  0.799555  normal 
 
 
-
 
NC_009654  Mmwyl1_2773  methyl-accepting chemotaxis sensory transducer  52.11 
 
 
540 aa  272  9e-72  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_009438  Sputcn32_2054  methyl-accepting chemotaxis sensory transducer  50.32 
 
 
539 aa  271  2.9999999999999997e-71  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_3322  methyl-accepting chemotaxis sensory transducer  36.05 
 
 
539 aa  270  4e-71  Marinomonas sp. MWYL1  Bacteria  normal  normal  0.910778 
 
 
-
 
NC_009654  Mmwyl1_3323  methyl-accepting chemotaxis sensory transducer  47.08 
 
 
539 aa  263  6e-69  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_0905  histidine kinase, HAMP region: chemotaxis sensory transducer  44.29 
 
 
640 aa  256  6e-67  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.746842  normal 
 
 
-
 
NC_009439  Pmen_3139  methyl-accepting chemotaxis sensory transducer  42.34 
 
 
640 aa  256  8e-67  Pseudomonas mendocina ymp  Bacteria  normal  0.753261  normal  0.0120166 
 
 
-
 
NC_004578  PSPTO_1059  methyl-accepting chemotaxis protein  44.01 
 
 
629 aa  252  1e-65  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_0157  methyl-accepting chemotaxis sensory transducer  43.32 
 
 
646 aa  252  1e-65  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.805637  n/a   
 
 
-
 
NC_004578  PSPTO_0995  methyl-accepting chemotaxis protein  43.12 
 
 
557 aa  249  1e-64  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.467879  n/a   
 
 
-
 
NC_011901  Tgr7_0580  putative methyl-accepting chemotaxis sensory transducer  47.68 
 
 
679 aa  248  2e-64  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_1674  methyl-accepting chemotaxis sensory transducer  34.36 
 
 
543 aa  248  2e-64  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_2319  methyl-accepting chemotaxis sensory transducer  48.41 
 
 
546 aa  246  4.9999999999999997e-64  Pseudomonas putida W619  Bacteria  normal  0.217936  normal 
 
 
-
 
NC_003295  RSc3412  putative methyl-accepting chemotaxis I (serine chemoreceptor) transmembrane protein  34.01 
 
 
515 aa  245  9.999999999999999e-64  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.934147 
 
 
-
 
NC_004578  PSPTO_3291  methyl-accepting chemotaxis protein  35.09 
 
 
542 aa  245  9.999999999999999e-64  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.470345  n/a   
 
 
-
 
NC_007005  Psyr_0860  histidine kinase, HAMP region: chemotaxis sensory transducer  42.89 
 
 
558 aa  245  9.999999999999999e-64  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.572392 
 
 
-
 
NC_002947  PP_5020  methyl-accepting chemotaxis sensory transducer  45.54 
 
 
638 aa  244  3e-63  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_2997  methyl-accepting chemotaxis protein  48.43 
 
 
542 aa  244  3e-63  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.686035  n/a   
 
 
-
 
NC_009512  Pput_4894  methyl-accepting chemotaxis sensory transducer  45.22 
 
 
638 aa  243  3.9999999999999997e-63  Pseudomonas putida F1  Bacteria  normal  0.291281  normal 
 
 
-
 
NC_004578  PSPTO_2616  methyl-accepting chemotaxis protein  41.31 
 
 
633 aa  243  6e-63  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  decreased coverage  0.00438795  n/a   
 
 
-
 
NC_007005  Psyr_2878  histidine kinase, HAMP region: chemotaxis sensory transducer  49.06 
 
 
542 aa  243  6e-63  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.425048  normal  0.909341 
 
 
-
 
NC_010322  PputGB1_5070  methyl-accepting chemotaxis sensory transducer  44.9 
 
 
638 aa  242  2e-62  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_0445  methyl-accepting chemotaxis sensory transducer  44.59 
 
 
638 aa  239  1e-61  Pseudomonas putida W619  Bacteria  normal  0.455391  normal 
 
 
-
 
NC_011901  Tgr7_1963  putative methyl-accepting chemotaxis sensory transducer  46.79 
 
 
637 aa  238  2e-61  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.870205  n/a   
 
 
-
 
NC_009438  Sputcn32_1426  methyl-accepting chemotaxis sensory transducer  40.95 
 
 
634 aa  237  4e-61  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_0712  putative methyl-accepting chemotaxis sensory transducer  47.45 
 
 
624 aa  236  9e-61  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_2356  histidine kinase, HAMP region: chemotaxis sensory transducer  39.89 
 
 
619 aa  235  1.0000000000000001e-60  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.0809243  normal  0.398562 
 
 
-
 
NC_007005  Psyr_5092  histidine kinase, HAMP region: chemotaxis sensory transducer  40.94 
 
 
640 aa  235  1.0000000000000001e-60  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_011901  Tgr7_1324  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  48.07 
 
 
523 aa  235  2.0000000000000002e-60  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.587106  n/a   
 
 
-
 
NC_004578  PSPTO_5553  methyl-accepting chemotaxis protein  40.16 
 
 
640 aa  231  2e-59  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_0380  histidine kinase, HAMP region: chemotaxis sensory transducer  41.53 
 
 
638 aa  229  1e-58  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_4653  methyl-accepting chemotaxis sensory transducer  45.22 
 
 
639 aa  228  2e-58  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_008700  Sama_2502  putative methyl-accepting chemotaxis sensory transducer  37.53 
 
 
649 aa  228  2e-58  Shewanella amazonensis SB2B  Bacteria  normal  0.988754  normal 
 
 
-
 
NC_013422  Hneap_1124  methyl-accepting chemotaxis sensory transducer  44.13 
 
 
547 aa  228  2e-58  Halothiobacillus neapolitanus c2  Bacteria  hitchhiker  0.00163985  n/a   
 
 
-
 
NC_008463  PA14_67010  putative chemotaxis transducer  45.3 
 
 
647 aa  228  2e-58  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_004349  SO_A0106  methyl-accepting chemotaxis protein  36.71 
 
 
546 aa  227  4e-58  Shewanella oneidensis MR-1  Bacteria  normal  0.827543  n/a   
 
 
-
 
NC_009512  Pput_4520  methyl-accepting chemotaxis sensory transducer  44.59 
 
 
639 aa  226  6e-58  Pseudomonas putida F1  Bacteria  normal  normal  0.886367 
 
 
-
 
NC_002947  PP_4658  methyl-accepting chemotaxis sensory transducer  44.59 
 
 
639 aa  226  8e-58  Pseudomonas putida KT2440  Bacteria  normal  0.415489  normal 
 
 
-
 
NC_009439  Pmen_1701  methyl-accepting chemotaxis sensory transducer  41.86 
 
 
650 aa  225  1e-57  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.076135 
 
 
-
 
NC_010501  PputW619_0778  methyl-accepting chemotaxis sensory transducer  44.9 
 
 
639 aa  226  1e-57  Pseudomonas putida W619  Bacteria  normal  normal  0.66043 
 
 
-
 
NC_013456  VEA_003886  methyl-accepting chemotaxis protein  32.3 
 
 
542 aa  226  1e-57  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_1939  methyl-accepting chemotaxis sensory transducer  37.78 
 
 
638 aa  225  2e-57  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.573171  n/a   
 
 
-
 
NC_004578  PSPTO_3680  methyl-accepting chemotaxis protein  39.83 
 
 
676 aa  224  2e-57  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_1254  methyl-accepting chemotaxis sensory transducer  40.22 
 
 
639 aa  225  2e-57  Pseudomonas putida W619  Bacteria  normal  0.523103  normal  0.0331864 
 
 
-
 
NC_007492  Pfl01_0728  chemotaxis sensory transducer  41.41 
 
 
639 aa  224  2e-57  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_011901  Tgr7_0851  methyl-accepting chemotaxis sensory transducer  36.21 
 
 
674 aa  224  3e-57  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.244273  n/a   
 
 
-
 
NC_008340  Mlg_1098  methyl-accepting chemotaxis sensory transducer  39.03 
 
 
637 aa  224  4.9999999999999996e-57  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.0167241  normal 
 
 
-
 
NC_007005  Psyr_1798  histidine kinase, HAMP region: chemotaxis sensory transducer  41.77 
 
 
681 aa  223  4.9999999999999996e-57  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.668901  normal  0.381267 
 
 
-
 
NC_009656  PSPA7_5811  putative chemotaxis transducer  42.81 
 
 
647 aa  223  6e-57  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008340  Mlg_1937  methyl-accepting chemotaxis sensory transducer  38.87 
 
 
541 aa  222  9.999999999999999e-57  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.158854  normal  0.960341 
 
 
-
 
NC_004578  PSPTO_3098  methyl-accepting chemotaxis protein  39.51 
 
 
642 aa  221  1.9999999999999999e-56  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.398555  n/a   
 
 
-
 
NC_007005  Psyr_2966  histidine kinase, HAMP region: chemotaxis sensory transducer  38.52 
 
 
642 aa  221  3e-56  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.249585  normal  0.113943 
 
 
-
 
NC_010501  PputW619_2284  methyl-accepting chemotaxis sensory transducer  39.44 
 
 
653 aa  220  3.9999999999999997e-56  Pseudomonas putida W619  Bacteria  normal  hitchhiker  0.00297466 
 
 
-
 
NC_008740  Maqu_3269  methyl-accepting chemotaxis sensory transducer  38.04 
 
 
605 aa  220  5e-56  Marinobacter aquaeolei VT8  Bacteria  hitchhiker  0.000515244  n/a   
 
 
-
 
NC_008789  Hhal_0167  methyl-accepting chemotaxis sensory transducer  39.22 
 
 
540 aa  220  6e-56  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_013889  TK90_0949  methyl-accepting chemotaxis sensory transducer  42.9 
 
 
636 aa  220  6e-56  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.0451727 
 
 
-
 
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