| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_2109 |
|---|
| Symbol | |
|---|
| ID | 3367623 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | + |
|---|
| Start bp | 2462935 |
|---|
| End bp | 2464554 |
|---|
| Gene Length | 1620 bp |
|---|
| Protein Length | 539 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 637652458 |
|---|
| Product | histidine kinase, HAMP region: chemotaxis sensory transducer |
|---|
| Protein accession | YP_235190 |
|---|
| Protein GI | 66045349 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.950044 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.0787865 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGAAACG TCAAGGTCGC TGTTCGTGCC GGGATGAGCT TTATGCTGAT CACCTGCCTG
CTCATCGCGC TGGGAGGGAT CGCGCTATGG AAAATGGGCG AGTTACGGGC CAGCATGGAA
TCGCTGGAAA AGGACGCGAT GGCCAGCATC ATACAGGCTA ACAAAATAAG CAGCGCCACG
CTGCGTTTGC GACTGGATGC CCGGCGATTG ATTGCACAGA CTGACCCGCA GGCTCAGACA
ATTACCGTGA CTCGATTGAA AGCTGCGCGA GAAGACATGC TCAAACAATC TGCTGCATAT
GCGCCGCTGG CAAGCGCTGC CGATGAGGCA AGTCTCTATC AAACCGTCAC TGCGTCCGCC
CAGAAGTTTG CGTCACTTCT GGATACGGTG CTCGAATTGA TTCAGAAAGG TGCCAACGCT
GATGCGGTGA CGTTTACCGA CACCAATATA GTGCCCGTCA CCGGTGAGTT GCAGACCGCC
ATCGATGCGT TGGTGCAGAT GAATATTGAT CAGGCCGATC AACTGAGTGT GCGTGCAGAA
GCCGCCTATG AAAGTGGTTT TATGTTCACA GTGGTTATTA TTATAGTGTC ATTGATTATT
ACCATATTTC TCGCGATTCT GTTGACGCGC AGTATTGTCA CGCCTTTGAA ATCATTGTTG
TCGGTCAATG AGCGTATTGC CAGCGGTGAT CTTCGTGGTG ATATTCCGGT CACCGGTGAC
GATGAGTTTT CCGAACTGCA ACGCGCGACA CTGGCCATGC AGAAGAACCT GCGACAAACC
ATTGGCCTGA TCGGCAACTC GTCACAGCAA CTGGCTTCCG CTGCCGAAGA AATGAACTGC
ATCACCGTGC AGTCCAGCAC CGGGTTGGGG CGTCAGAATC AGGAGATCGA GCAGGCCGCC
ACGGCGGTCA ACGAAATGAC CGCAGCGGTC GATGAGGTCG CACGCAACGC AGCAGCTGCG
TCTGACGCAG CGAAAGAATC CAACGCCTCC ACCGTGCGCG GGGCTGAGCG AGTGGCCAGT
ACCGTCACCG CGATCGAAAA ACTGAGCGCC ACGGTGCTTG CCACCAGTGC TGACGTGCAG
CGTCTGGCCG GACAATCCAA CGACATCAGC AAAGTCCTCG CGGTGATTCG TACCATCGCC
GAGCAAACCA ACCTGCTTGC TCTCAACGCC GCTATTGAAG CCGCTCGTGC CGGCGAGCAG
GGGCGCGGTT TTGCGGTGGT GGCGGATGAG GTCCGGGCAC TGGCGCATCG CACCCAGCAG
TCCACCCAGG AAATCGAGCA AATGATCGGC GCCGTTCTAG AGGGCTCCGA ACAAGCCACC
CGGTCGATGC AGGAAAGTTG CATGGGCGCG CAGGATACTC TGGGGGTTGC ACATGAGGCC
GGTGCAGCGC TTGACGATAT TGCCCGGCGT ATCGAAGAAA TCAATGACAT GAACACGCTG
ATCGCCACAG CTTCCGAAGA GCAGGCGCAG GTGGCTCGTT CCATCGACCA CAATCTGATC
AGTATTCGCG ACCTGTCCGT GCAGAGTACC GAGGGCGCCA ATCAGACTTC CCTTGCCAGT
GGCGAACTGT CGAGACTGGC CATTGAAATG AATGGCGTCG TTACACGATT CAAGATGTAA
|
|---|
| Protein sequence | MRNVKVAVRA GMSFMLITCL LIALGGIALW KMGELRASME SLEKDAMASI IQANKISSAT
LRLRLDARRL IAQTDPQAQT ITVTRLKAAR EDMLKQSAAY APLASAADEA SLYQTVTASA
QKFASLLDTV LELIQKGANA DAVTFTDTNI VPVTGELQTA IDALVQMNID QADQLSVRAE
AAYESGFMFT VVIIIVSLII TIFLAILLTR SIVTPLKSLL SVNERIASGD LRGDIPVTGD
DEFSELQRAT LAMQKNLRQT IGLIGNSSQQ LASAAEEMNC ITVQSSTGLG RQNQEIEQAA
TAVNEMTAAV DEVARNAAAA SDAAKESNAS TVRGAERVAS TVTAIEKLSA TVLATSADVQ
RLAGQSNDIS KVLAVIRTIA EQTNLLALNA AIEAARAGEQ GRGFAVVADE VRALAHRTQQ
STQEIEQMIG AVLEGSEQAT RSMQESCMGA QDTLGVAHEA GAALDDIARR IEEINDMNTL
IATASEEQAQ VARSIDHNLI SIRDLSVQST EGANQTSLAS GELSRLAIEM NGVVTRFKM
|
|---|
| |