More than 300 homologs were found in PanDaTox collection
for query gene Nham_1067 on replicon NC_007964
Organism: Nitrobacter hamburgensis X14



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007964  Nham_1067  HAD family hydrolase  100 
 
 
249 aa  499  1e-140  Nitrobacter hamburgensis X14  Bacteria  normal  0.307396  n/a   
 
 
-
 
NC_007406  Nwi_0553  HAD family hydrolase  76.25 
 
 
247 aa  366  1e-100  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_6394  haloacid dehalogenase-like hydrolase  62.76 
 
 
240 aa  286  2.9999999999999996e-76  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.275881  normal 
 
 
-
 
NC_007925  RPC_2894  HAD family hydrolase  54.93 
 
 
233 aa  229  4e-59  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.338332  normal  0.157794 
 
 
-
 
NC_013422  Hneap_0732  HAD-superfamily hydrolase, subfamily IA, variant 3  52.27 
 
 
252 aa  217  1e-55  Halothiobacillus neapolitanus c2  Bacteria  normal  0.595583  n/a   
 
 
-
 
NC_007404  Tbd_0690  HAD family hydrolase  50.85 
 
 
253 aa  210  2e-53  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.32351  normal  0.224311 
 
 
-
 
NC_009485  BBta_0457  putative haloacid dehalogenase-like hydrolase cbbY-like protein  50 
 
 
236 aa  207  9e-53  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.0760422 
 
 
-
 
NC_007484  Noc_0880  HAD family hydrolase  49.33 
 
 
255 aa  202  5e-51  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_3556  HAD family hydrolase  51.61 
 
 
262 aa  201  6e-51  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_011761  AFE_1466  HAD-superfamily hydrolase, subfamily IA, variant 3  50.68 
 
 
254 aa  198  7.999999999999999e-50  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_4237  HAD family hydrolase  51.6 
 
 
248 aa  198  7.999999999999999e-50  Rhodopseudomonas palustris BisB5  Bacteria  hitchhiker  0.00960992  normal  0.35717 
 
 
-
 
NC_011206  Lferr_1182  HAD-superfamily hydrolase, subfamily IA, variant 3  50.68 
 
 
254 aa  198  7.999999999999999e-50  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal  0.91289 
 
 
-
 
NC_011004  Rpal_5014  HAD-superfamily hydrolase, subfamily IA, variant 3  50 
 
 
248 aa  195  7e-49  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.652483  n/a   
 
 
-
 
NC_011729  PCC7424_5215  HAD-superfamily hydrolase, subfamily IA, variant 3  47.32 
 
 
248 aa  193  2e-48  Cyanothece sp. PCC 7424  Bacteria  n/a    hitchhiker  0.00121216 
 
 
-
 
NC_007778  RPB_4341  HAD family hydrolase  50.69 
 
 
248 aa  193  2e-48  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.0493927 
 
 
-
 
NC_007952  Bxe_B2478  HAD family hydrolase  48.18 
 
 
254 aa  193  2e-48  Burkholderia xenovorans LB400  Bacteria  normal  0.0642975  normal  0.83029 
 
 
-
 
NC_013889  TK90_0853  HAD-superfamily hydrolase, subfamily IA, variant 3  46.88 
 
 
254 aa  191  7e-48  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal 
 
 
-
 
NC_007614  Nmul_A0608  HAD family hydrolase  46.9 
 
 
259 aa  191  1e-47  Nitrosospira multiformis ATCC 25196  Bacteria  normal  0.675821  n/a   
 
 
-
 
NC_010725  Mpop_0931  HAD-superfamily hydrolase, subfamily IA, variant 3  46.54 
 
 
253 aa  190  2e-47  Methylobacterium populi BJ001  Bacteria  normal  0.22053  normal  0.844847 
 
 
-
 
NC_008312  Tery_4648  HAD family hydrolase  43.81 
 
 
252 aa  190  2e-47  Trichodesmium erythraeum IMS101  Bacteria  normal  0.842677  normal  0.864231 
 
 
-
 
NC_007298  Daro_3629  HAD family hydrolase  50.22 
 
 
233 aa  189  2.9999999999999997e-47  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.956312 
 
 
-
 
NC_007973  Rmet_1517  HAD family hydrolase  47.87 
 
 
272 aa  187  1e-46  Cupriavidus metallidurans CH34  Bacteria  hitchhiker  0.00550293  decreased coverage  0.0000688846 
 
 
-
 
NC_011884  Cyan7425_3617  HAD-superfamily hydrolase, subfamily IA, variant 3  45.95 
 
 
256 aa  186  3e-46  Cyanothece sp. PCC 7425  Bacteria  normal  0.675115  normal 
 
 
-
 
NC_007493  RSP_1279  CbbY family protein  45.25 
 
 
230 aa  186  3e-46  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.183021  n/a   
 
 
-
 
NC_009049  Rsph17029_2938  HAD family hydrolase  45.25 
 
 
230 aa  186  3e-46  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_013161  Cyan8802_2025  HAD-superfamily hydrolase, subfamily IA, variant 3  47.73 
 
 
247 aa  184  9e-46  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_011726  PCC8801_2000  HAD-superfamily hydrolase, subfamily IA, variant 3  47.73 
 
 
247 aa  184  9e-46  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_007604  Synpcc7942_1885  HAD family hydrolase  50 
 
 
255 aa  184  2.0000000000000003e-45  Synechococcus elongatus PCC 7942  Bacteria  normal  normal 
 
 
-
 
NC_014213  Mesil_3262  hypothetical protein  48.17 
 
 
250 aa  181  9.000000000000001e-45  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.343145 
 
 
-
 
NC_011757  Mchl_0953  HAD-superfamily hydrolase, subfamily IA, variant 3  45.16 
 
 
253 aa  181  1e-44  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_007520  Tcr_1242  HAD family hydrolase  41.96 
 
 
253 aa  181  1e-44  Thiomicrospira crunogena XCL-2  Bacteria  normal  0.496272  n/a   
 
 
-
 
NC_008340  Mlg_0810  HAD family hydrolase  46.98 
 
 
241 aa  181  1e-44  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.731901  normal  0.645331 
 
 
-
 
NC_009428  Rsph17025_2709  HAD family hydrolase  47.69 
 
 
230 aa  181  1e-44  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal  0.672792 
 
 
-
 
NC_010172  Mext_0990  HAD family hydrolase  45.16 
 
 
253 aa  181  1e-44  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.480228 
 
 
-
 
NC_011901  Tgr7_1033  HAD-superfamily hydrolase, subfamily IA, variant 3  47.56 
 
 
260 aa  176  5e-43  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_3029  HAD-superfamily hydrolase, subfamily IA, variant 3  45.25 
 
 
267 aa  174  9e-43  Variovorax paradoxus S110  Bacteria  normal  0.0148713  n/a   
 
 
-
 
NC_008825  Mpe_A2785  haloacid dehalogenase  44.81 
 
 
267 aa  170  2e-41  Methylibium petroleiphilum PM1  Bacteria  normal  normal 
 
 
-
 
NC_008781  Pnap_1980  HAD family hydrolase  45.13 
 
 
253 aa  169  4e-41  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.294868  normal 
 
 
-
 
NC_008789  Hhal_1452  HAD family hydrolase  43.35 
 
 
241 aa  167  2e-40  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_008825  Mpe_A1484  haloacid dehalogenase  47.25 
 
 
257 aa  163  3e-39  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.514428 
 
 
-
 
NC_010524  Lcho_3750  HAD family hydrolase  45.45 
 
 
249 aa  158  9e-38  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.773366 
 
 
-
 
NC_013124  Afer_0609  HAD-superfamily hydrolase, subfamily IA, variant 3  44.5 
 
 
249 aa  154  1e-36  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  0.447765  n/a   
 
 
-
 
NC_011678  PHATRDRAFT_12969  predicted protein  37.78 
 
 
244 aa  150  1e-35  Phaeodactylum tricornutum CCAP 1055/1  Eukaryota  normal  n/a   
 
 
-
 
NC_011894  Mnod_0323  HAD-superfamily hydrolase, subfamily IA, variant 3  43.24 
 
 
258 aa  150  2e-35  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_009355  OSTLU_5695  predicted protein  36.04 
 
 
229 aa  145  5e-34  Ostreococcus lucimarinus CCE9901  Eukaryota  normal  n/a   
 
 
-
 
NC_010511  M446_2280  HAD family hydrolase  42.86 
 
 
256 aa  142  3e-33  Methylobacterium sp. 4-46  Bacteria  normal  0.299074  normal  0.0109793 
 
 
-
 
NC_013530  Xcel_0079  HAD-superfamily hydrolase, subfamily IA, variant 3  42.48 
 
 
248 aa  143  3e-33  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_013235  Namu_3317  HAD-superfamily hydrolase, subfamily IA, variant 3  37.27 
 
 
262 aa  132  3.9999999999999996e-30  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.0000267703  hitchhiker  0.00944163 
 
 
-
 
NC_013739  Cwoe_3124  HAD-superfamily hydrolase, subfamily IA, variant 3  37.67 
 
 
254 aa  131  7.999999999999999e-30  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_007335  PMN2A_0356  HAD family hydrolase  34.52 
 
 
248 aa  118  9.999999999999999e-26  Prochlorococcus marinus str. NATL2A  Bacteria  normal  0.138453  n/a   
 
 
-
 
NC_009976  P9211_09091  putative CbbY-like protein  31.82 
 
 
249 aa  114  1.0000000000000001e-24  Prochlorococcus marinus str. MIT 9211  Bacteria  normal  0.642347  hitchhiker  0.000010947 
 
 
-
 
NC_008819  NATL1_10371  putative CbbY-like protein  33.5 
 
 
248 aa  112  4.0000000000000004e-24  Prochlorococcus marinus str. NATL1A  Bacteria  normal  0.549559  hitchhiker  0.0000687535 
 
 
-
 
NC_007513  Syncc9902_1156  HAD family hydrolase  34 
 
 
251 aa  107  1e-22  Synechococcus sp. CC9902  Bacteria  normal  0.10504  n/a   
 
 
-
 
NC_009091  P9301_10171  putative CbbY-like protein  31.61 
 
 
253 aa  105  7e-22  Prochlorococcus marinus str. MIT 9301  Bacteria  normal  0.606492  n/a   
 
 
-
 
NC_007577  PMT9312_0949  putative CbbY  30 
 
 
254 aa  103  2e-21  Prochlorococcus marinus str. MIT 9312  Bacteria  normal  0.283596  n/a   
 
 
-
 
NC_008816  A9601_10181  putative CbbY-like protein  31.58 
 
 
253 aa  104  2e-21  Prochlorococcus marinus str. AS9601  Bacteria  normal  n/a   
 
 
-
 
NC_009369  OSTLU_27888  predicted protein  32.77 
 
 
297 aa  102  6e-21  Ostreococcus lucimarinus CCE9901  Eukaryota  normal  0.0126093  normal  0.151084 
 
 
-
 
NC_011679  PHATR_13261  predicted protein  32.91 
 
 
238 aa  100  2e-20  Phaeodactylum tricornutum CCAP 1055/1  Eukaryota  normal  0.684824  n/a   
 
 
-
 
NC_008817  P9515_09281  putative CbbY-like protein  29.84 
 
 
249 aa  97.1  2e-19  Prochlorococcus marinus str. MIT 9515  Bacteria  normal  n/a   
 
 
-
 
NC_008820  P9303_14541  putative CbbY-like protein  37.69 
 
 
252 aa  96.3  4e-19  Prochlorococcus marinus str. MIT 9303  Bacteria  n/a    normal 
 
 
-
 
NC_007516  Syncc9605_1319  HAD family hydrolase  34.46 
 
 
259 aa  90.5  2e-17  Synechococcus sp. CC9605  Bacteria  normal  normal  0.0765605 
 
 
-
 
NC_007802  Jann_1064  haloacid dehalogenase-like hydrolase  31.1 
 
 
225 aa  90.9  2e-17  Jannaschia sp. CCS1  Bacteria  normal  0.0114019  normal 
 
 
-
 
NC_011060  Ppha_2878  beta-phosphoglucomutase family hydrolase  30.49 
 
 
233 aa  84  0.000000000000002  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_0641  HAD family hydrolase  30.91 
 
 
220 aa  84  0.000000000000002  Marinomonas sp. MWYL1  Bacteria  normal  0.950078  normal  0.0427696 
 
 
-
 
NC_013457  VEA_000391  2-deoxyglucose-6-phosphate hydrolase YniC  30.57 
 
 
218 aa  82.8  0.000000000000004  Vibrio sp. Ex25  Bacteria  normal  0.0106831  n/a   
 
 
-
 
NC_013061  Phep_3134  HAD-superfamily hydrolase, subfamily IA, variant 3  29.28 
 
 
219 aa  82  0.000000000000007  Pedobacter heparinus DSM 2366  Bacteria  normal  0.833655  normal 
 
 
-
 
NC_007512  Plut_2091  Beta-phosphoglucomutase hydrolase  31.53 
 
 
233 aa  81.6  0.00000000000001  Chlorobium luteolum DSM 273  Bacteria  normal  normal 
 
 
-
 
NC_007517  Gmet_1348  HAD family hydrolase  31.56 
 
 
226 aa  81.6  0.00000000000001  Geobacter metallireducens GS-15  Bacteria  normal  0.523514  hitchhiker  0.0000000193697 
 
 
-
 
NC_013162  Coch_0471  HAD-superfamily hydrolase, subfamily IA, variant 3  24.77 
 
 
210 aa  81.6  0.00000000000001  Capnocytophaga ochracea DSM 7271  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_0822  HAD family hydrolase  26.48 
 
 
396 aa  79  0.00000000000007  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_1871  HAD-superfamily hydrolase, subfamily IA, variant 3  33.01 
 
 
227 aa  79  0.00000000000007  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_009012  Cthe_0780  HAD family hydrolase  29.59 
 
 
227 aa  78.2  0.0000000000001  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_1614  HAD-superfamily hydrolase, subfamily IA, variant 3  28.76 
 
 
224 aa  77.4  0.0000000000002  Geobacter lovleyi SZ  Bacteria  normal  0.0147527  n/a   
 
 
-
 
NC_013526  Tter_2485  HAD-superfamily hydrolase, subfamily IA, variant 3  29.38 
 
 
238 aa  77.8  0.0000000000002  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_4498  HAD-superfamily hydrolase subfamily IA, variant 3  42.72 
 
 
223 aa  76.3  0.0000000000004  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.511661  normal  0.0143777 
 
 
-
 
NC_010001  Cphy_1021  beta-phosphoglucomutase  25.13 
 
 
209 aa  76.3  0.0000000000004  Clostridium phytofermentans ISDg  Bacteria  normal  0.0660798  n/a   
 
 
-
 
NC_008700  Sama_0381  2-deoxyglucose-6-phosphatase  32.29 
 
 
221 aa  76.6  0.0000000000004  Shewanella amazonensis SB2B  Bacteria  hitchhiker  0.0071153  normal  0.324571 
 
 
-
 
NC_009485  BBta_7216  putative haloacid dehalogenase-like hydrolase  31.55 
 
 
223 aa  75.9  0.0000000000006  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_009486  Tpet_1517  HAD family hydrolase  29.44 
 
 
216 aa  75.9  0.0000000000006  Thermotoga petrophila RKU-1  Bacteria  normal  n/a   
 
 
-
 
NC_009487  SaurJH9_2344  HAD family hydrolase  30 
 
 
211 aa  75.9  0.0000000000006  Staphylococcus aureus subsp. aureus JH9  Bacteria  hitchhiker  0.000000386998  n/a   
 
 
-
 
NC_009632  SaurJH1_2387  HAD family hydrolase  30 
 
 
211 aa  75.9  0.0000000000006  Staphylococcus aureus subsp. aureus JH1  Bacteria  hitchhiker  0.000185425  n/a   
 
 
-
 
NC_009707  JJD26997_1807  HAD superfamily hydrolase  25.11 
 
 
212 aa  75.5  0.0000000000007  Campylobacter jejuni subsp. doylei 269.97  Bacteria  normal  n/a   
 
 
-
 
NC_010483  TRQ2_1566  HAD family hydrolase  29.44 
 
 
216 aa  75.1  0.0000000000009  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_010338  Caul_0320  HAD family hydrolase  32.8 
 
 
241 aa  75.1  0.0000000000009  Caulobacter sp. K31  Bacteria  normal  0.288784  normal 
 
 
-
 
NC_008025  Dgeo_0096  HAD family hydrolase  30.43 
 
 
238 aa  75.1  0.000000000001  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.803846  normal 
 
 
-
 
NC_013037  Dfer_2943  HAD-superfamily hydrolase, subfamily IA, variant 3  26.61 
 
 
218 aa  74.7  0.000000000001  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.86932  normal 
 
 
-
 
NC_009784  VIBHAR_05174  phosphoglycolate phosphatase  29.26 
 
 
256 aa  73.9  0.000000000002  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009441  Fjoh_2690  HAD family hydrolase  28.31 
 
 
221 aa  73.9  0.000000000002  Flavobacterium johnsoniae UW101  Bacteria  normal  0.365385  n/a   
 
 
-
 
NC_012918  GM21_1179  HAD-superfamily hydrolase, subfamily IA, variant 3  31.6 
 
 
224 aa  74.3  0.000000000002  Geobacter sp. M21  Bacteria  n/a    hitchhiker  2.0108500000000004e-18 
 
 
-
 
NC_007413  Ava_3074  HAD family hydrolase  31.37 
 
 
222 aa  73.9  0.000000000002  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_013169  Ksed_13910  haloacid dehalogenase superfamily protein, subfamily IA, variant 3 with third motif having DD or ED  31.03 
 
 
232 aa  73.2  0.000000000003  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.491881  normal 
 
 
-
 
NC_011004  Rpal_4817  HAD-superfamily hydrolase, subfamily IA, variant 3  30.32 
 
 
235 aa  73.6  0.000000000003  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.821962  n/a   
 
 
-
 
NC_011059  Paes_2237  beta-phosphoglucomutase family hydrolase  27.51 
 
 
254 aa  73.2  0.000000000003  Prosthecochloris aestuarii DSM 271  Bacteria  normal  0.202357  normal 
 
 
-
 
NC_007519  Dde_2523  HAD family hydrolase  29.52 
 
 
219 aa  73.6  0.000000000003  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  hitchhiker  0.000000000119514  n/a   
 
 
-
 
NC_009441  Fjoh_2777  HAD family hydrolase  24.89 
 
 
220 aa  73.6  0.000000000003  Flavobacterium johnsoniae UW101  Bacteria  normal  0.0810098  n/a   
 
 
-
 
NC_010338  Caul_3346  HAD family hydrolase  31.41 
 
 
221 aa  73.2  0.000000000004  Caulobacter sp. K31  Bacteria  normal  0.363754  normal 
 
 
-
 
NC_010581  Bind_0935  HAD family hydrolase  29.95 
 
 
235 aa  73.2  0.000000000004  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.941543  normal 
 
 
-
 
NC_009456  VC0395_0037  haloacid dehalogenase/epoxide hydrolase family protein  31.75 
 
 
219 aa  72.8  0.000000000005  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_3420  HAD family hydrolase  27.52 
 
 
242 aa  72.8  0.000000000005  Anabaena variabilis ATCC 29413  Bacteria  normal  0.964625  normal 
 
 
-
 
NC_011146  Gbem_3082  HAD-superfamily hydrolase, subfamily IA, variant 3  31.6 
 
 
224 aa  72.8  0.000000000005  Geobacter bemidjiensis Bem  Bacteria  normal  0.48861  n/a   
 
 
-
 
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