| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_4237 |
|---|
| Symbol | |
|---|
| ID | 4024758 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | - |
|---|
| Start bp | 4704959 |
|---|
| End bp | 4705705 |
|---|
| Gene Length | 747 bp |
|---|
| Protein Length | 248 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 637964443 |
|---|
| Product | HAD family hydrolase |
|---|
| Protein accession | YP_571355 |
|---|
| Protein GI | 91978696 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0637] Predicted phosphatase/phosphohexomutase |
|---|
| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.00960992 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.35717 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTACCAT CAGCTATGAT CTTCGACGTC GATGGGACGC TTTCGGAGAC GGAAGAGCTT
CATCGGCAGG CCTTCAACGA AATCTTCGCC GCTGAGAAGC TGCCATGGCA TTGGGACGCA
GCCGACTATC GGCGGCTGCT CGACGTCGCC GGCGGCAAGG AGCGGATCGC ACATTTCCTG
GCGGCGCAGC CCGAAGGCGC AGACCGCGCG GTGGGCCGGA TCGCCGAACT ACATGCCGCC
AAGACTGCGC GCTACAGTGC GCTGATCGCA GCCGGCGCGG CGCTGCGTCC CGGCGTGGAG
CGGCTGATCC GCGAGGCGAA GGCGGCCGGC GTGCGGCTGG CAATCGCCAC CACTACCAGC
CTGCCGAATG TCGAGGCGCT GCTCGGCGCC TCACTCGGGC GCGAAGCGAT CGCGCTGTTC
GAAGTGATCG GCGCCGGCGA CGTCGTGCCG GCCAAGAAGC CTGCTCCGGA CATCTATCAA
TATGTGCTCG AGCGGCTGGC GCTGCCGGCG TCGGCTTGCG TTGCCTTCGA GGATTCCACC
AACGGCGTCC GCGCGGCGCG CGGCGCCGGC CTTGCCACCA TCGTGACGCA GGGGATGTAT
ACCGAGGGCG ACGATTTCGC GGGCGCGCTG GCTGTGCTGA GCGATCTCGG CGAGCCTGAC
GCGCCGTACC GGCATCTCGC AGGCGCCGGG GCCGGCGACA GGTTGGTGAC GCTCGACGCG
CTCGGGCGCT GGCTCGAAGC CGCCTGA
|
|---|
| Protein sequence | MLPSAMIFDV DGTLSETEEL HRQAFNEIFA AEKLPWHWDA ADYRRLLDVA GGKERIAHFL
AAQPEGADRA VGRIAELHAA KTARYSALIA AGAALRPGVE RLIREAKAAG VRLAIATTTS
LPNVEALLGA SLGREAIALF EVIGAGDVVP AKKPAPDIYQ YVLERLALPA SACVAFEDST
NGVRAARGAG LATIVTQGMY TEGDDFAGAL AVLSDLGEPD APYRHLAGAG AGDRLVTLDA
LGRWLEAA
|
|---|
| |