More than 300 homologs were found in PanDaTox collection
for query gene Rpal_5014 on replicon NC_011004
Organism: Rhodopseudomonas palustris TIE-1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011004  Rpal_5014  HAD-superfamily hydrolase, subfamily IA, variant 3  100 
 
 
248 aa  492  9.999999999999999e-139  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.652483  n/a   
 
 
-
 
NC_007778  RPB_4341  HAD family hydrolase  81.05 
 
 
248 aa  395  1e-109  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.0493927 
 
 
-
 
NC_007958  RPD_4237  HAD family hydrolase  79.44 
 
 
248 aa  396  1e-109  Rhodopseudomonas palustris BisB5  Bacteria  hitchhiker  0.00960992  normal  0.35717 
 
 
-
 
NC_010505  Mrad2831_3556  HAD family hydrolase  57.02 
 
 
262 aa  250  2e-65  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_007614  Nmul_A0608  HAD family hydrolase  55.02 
 
 
259 aa  237  1e-61  Nitrosospira multiformis ATCC 25196  Bacteria  normal  0.675821  n/a   
 
 
-
 
NC_007404  Tbd_0690  HAD family hydrolase  53.73 
 
 
253 aa  236  4e-61  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.32351  normal  0.224311 
 
 
-
 
NC_010172  Mext_0990  HAD family hydrolase  50.62 
 
 
253 aa  233  1.0000000000000001e-60  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.480228 
 
 
-
 
NC_011757  Mchl_0953  HAD-superfamily hydrolase, subfamily IA, variant 3  50.62 
 
 
253 aa  233  1.0000000000000001e-60  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_014213  Mesil_3262  hypothetical protein  53.5 
 
 
250 aa  231  1e-59  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.343145 
 
 
-
 
NC_011206  Lferr_1182  HAD-superfamily hydrolase, subfamily IA, variant 3  53.85 
 
 
254 aa  228  7e-59  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal  0.91289 
 
 
-
 
NC_011761  AFE_1466  HAD-superfamily hydrolase, subfamily IA, variant 3  53.85 
 
 
254 aa  228  7e-59  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_007493  RSP_1279  CbbY family protein  55.56 
 
 
230 aa  225  6e-58  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.183021  n/a   
 
 
-
 
NC_009049  Rsph17029_2938  HAD family hydrolase  55.56 
 
 
230 aa  225  6e-58  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_0457  putative haloacid dehalogenase-like hydrolase cbbY-like protein  56.22 
 
 
236 aa  223  2e-57  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.0760422 
 
 
-
 
NC_009428  Rsph17025_2709  HAD family hydrolase  55.5 
 
 
230 aa  223  3e-57  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal  0.672792 
 
 
-
 
NC_007952  Bxe_B2478  HAD family hydrolase  53.78 
 
 
254 aa  222  4e-57  Burkholderia xenovorans LB400  Bacteria  normal  0.0642975  normal  0.83029 
 
 
-
 
NC_012791  Vapar_3029  HAD-superfamily hydrolase, subfamily IA, variant 3  51.33 
 
 
267 aa  219  3e-56  Variovorax paradoxus S110  Bacteria  normal  0.0148713  n/a   
 
 
-
 
NC_011729  PCC7424_5215  HAD-superfamily hydrolase, subfamily IA, variant 3  49.8 
 
 
248 aa  218  5e-56  Cyanothece sp. PCC 7424  Bacteria  n/a    hitchhiker  0.00121216 
 
 
-
 
NC_010725  Mpop_0931  HAD-superfamily hydrolase, subfamily IA, variant 3  48.15 
 
 
253 aa  219  5e-56  Methylobacterium populi BJ001  Bacteria  normal  0.22053  normal  0.844847 
 
 
-
 
NC_013422  Hneap_0732  HAD-superfamily hydrolase, subfamily IA, variant 3  50.82 
 
 
252 aa  218  7e-56  Halothiobacillus neapolitanus c2  Bacteria  normal  0.595583  n/a   
 
 
-
 
NC_008825  Mpe_A2785  haloacid dehalogenase  53.6 
 
 
267 aa  217  1e-55  Methylibium petroleiphilum PM1  Bacteria  normal  normal 
 
 
-
 
NC_013889  TK90_0853  HAD-superfamily hydrolase, subfamily IA, variant 3  52 
 
 
254 aa  216  2.9999999999999998e-55  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal 
 
 
-
 
NC_011726  PCC8801_2000  HAD-superfamily hydrolase, subfamily IA, variant 3  50.88 
 
 
247 aa  216  2.9999999999999998e-55  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_008312  Tery_4648  HAD family hydrolase  44.63 
 
 
252 aa  216  2.9999999999999998e-55  Trichodesmium erythraeum IMS101  Bacteria  normal  0.842677  normal  0.864231 
 
 
-
 
NC_013161  Cyan8802_2025  HAD-superfamily hydrolase, subfamily IA, variant 3  50.88 
 
 
247 aa  216  2.9999999999999998e-55  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_2894  HAD family hydrolase  57.01 
 
 
233 aa  215  5e-55  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.338332  normal  0.157794 
 
 
-
 
NC_011894  Mnod_0323  HAD-superfamily hydrolase, subfamily IA, variant 3  52.23 
 
 
258 aa  215  5.9999999999999996e-55  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_3617  HAD-superfamily hydrolase, subfamily IA, variant 3  51.3 
 
 
256 aa  214  7e-55  Cyanothece sp. PCC 7425  Bacteria  normal  0.675115  normal 
 
 
-
 
NC_007484  Noc_0880  HAD family hydrolase  49.6 
 
 
255 aa  213  1.9999999999999998e-54  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_007520  Tcr_1242  HAD family hydrolase  46.67 
 
 
253 aa  209  3e-53  Thiomicrospira crunogena XCL-2  Bacteria  normal  0.496272  n/a   
 
 
-
 
NC_007298  Daro_3629  HAD family hydrolase  55.41 
 
 
233 aa  208  8e-53  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.956312 
 
 
-
 
NC_010511  M446_2280  HAD family hydrolase  54.39 
 
 
256 aa  206  2e-52  Methylobacterium sp. 4-46  Bacteria  normal  0.299074  normal  0.0109793 
 
 
-
 
NC_007406  Nwi_0553  HAD family hydrolase  51.8 
 
 
247 aa  205  5e-52  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_6394  haloacid dehalogenase-like hydrolase  53.02 
 
 
240 aa  197  2.0000000000000003e-49  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.275881  normal 
 
 
-
 
NC_007964  Nham_1067  HAD family hydrolase  50 
 
 
249 aa  195  7e-49  Nitrobacter hamburgensis X14  Bacteria  normal  0.307396  n/a   
 
 
-
 
NC_011901  Tgr7_1033  HAD-superfamily hydrolase, subfamily IA, variant 3  53.06 
 
 
260 aa  194  1e-48  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_007604  Synpcc7942_1885  HAD family hydrolase  50.87 
 
 
255 aa  194  1e-48  Synechococcus elongatus PCC 7942  Bacteria  normal  normal 
 
 
-
 
NC_008340  Mlg_0810  HAD family hydrolase  51.36 
 
 
241 aa  192  5e-48  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.731901  normal  0.645331 
 
 
-
 
NC_008781  Pnap_1980  HAD family hydrolase  51.6 
 
 
253 aa  182  5.0000000000000004e-45  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.294868  normal 
 
 
-
 
NC_008825  Mpe_A1484  haloacid dehalogenase  49.19 
 
 
257 aa  182  5.0000000000000004e-45  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.514428 
 
 
-
 
NC_008789  Hhal_1452  HAD family hydrolase  45.91 
 
 
241 aa  163  2.0000000000000002e-39  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_007973  Rmet_1517  HAD family hydrolase  46.26 
 
 
272 aa  161  9e-39  Cupriavidus metallidurans CH34  Bacteria  hitchhiker  0.00550293  decreased coverage  0.0000688846 
 
 
-
 
NC_013235  Namu_3317  HAD-superfamily hydrolase, subfamily IA, variant 3  45.75 
 
 
262 aa  159  4e-38  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.0000267703  hitchhiker  0.00944163 
 
 
-
 
NC_013124  Afer_0609  HAD-superfamily hydrolase, subfamily IA, variant 3  44.49 
 
 
249 aa  157  2e-37  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  0.447765  n/a   
 
 
-
 
NC_011678  PHATRDRAFT_12969  predicted protein  41.44 
 
 
244 aa  152  4e-36  Phaeodactylum tricornutum CCAP 1055/1  Eukaryota  normal  n/a   
 
 
-
 
NC_009355  OSTLU_5695  predicted protein  40.35 
 
 
229 aa  152  4e-36  Ostreococcus lucimarinus CCE9901  Eukaryota  normal  n/a   
 
 
-
 
NC_010524  Lcho_3750  HAD family hydrolase  45.54 
 
 
249 aa  150  3e-35  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.773366 
 
 
-
 
NC_013530  Xcel_0079  HAD-superfamily hydrolase, subfamily IA, variant 3  44.35 
 
 
248 aa  141  8e-33  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_3124  HAD-superfamily hydrolase, subfamily IA, variant 3  41.95 
 
 
254 aa  141  9.999999999999999e-33  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_007513  Syncc9902_1156  HAD family hydrolase  36.21 
 
 
251 aa  122  5e-27  Synechococcus sp. CC9902  Bacteria  normal  0.10504  n/a   
 
 
-
 
NC_009976  P9211_09091  putative CbbY-like protein  32.19 
 
 
249 aa  119  3.9999999999999996e-26  Prochlorococcus marinus str. MIT 9211  Bacteria  normal  0.642347  hitchhiker  0.000010947 
 
 
-
 
NC_008816  A9601_10181  putative CbbY-like protein  34.69 
 
 
253 aa  115  6.9999999999999995e-25  Prochlorococcus marinus str. AS9601  Bacteria  normal  n/a   
 
 
-
 
NC_008819  NATL1_10371  putative CbbY-like protein  33.33 
 
 
248 aa  115  8.999999999999998e-25  Prochlorococcus marinus str. NATL1A  Bacteria  normal  0.549559  hitchhiker  0.0000687535 
 
 
-
 
NC_007577  PMT9312_0949  putative CbbY  34.2 
 
 
254 aa  114  1.0000000000000001e-24  Prochlorococcus marinus str. MIT 9312  Bacteria  normal  0.283596  n/a   
 
 
-
 
NC_007335  PMN2A_0356  HAD family hydrolase  34.08 
 
 
248 aa  113  4.0000000000000004e-24  Prochlorococcus marinus str. NATL2A  Bacteria  normal  0.138453  n/a   
 
 
-
 
NC_007516  Syncc9605_1319  HAD family hydrolase  38.27 
 
 
259 aa  111  1.0000000000000001e-23  Synechococcus sp. CC9605  Bacteria  normal  normal  0.0765605 
 
 
-
 
NC_009369  OSTLU_27888  predicted protein  35.74 
 
 
297 aa  111  1.0000000000000001e-23  Ostreococcus lucimarinus CCE9901  Eukaryota  normal  0.0126093  normal  0.151084 
 
 
-
 
NC_009091  P9301_10171  putative CbbY-like protein  34.39 
 
 
253 aa  108  6e-23  Prochlorococcus marinus str. MIT 9301  Bacteria  normal  0.606492  n/a   
 
 
-
 
NC_008820  P9303_14541  putative CbbY-like protein  36.89 
 
 
252 aa  107  1e-22  Prochlorococcus marinus str. MIT 9303  Bacteria  n/a    normal 
 
 
-
 
NC_007802  Jann_1064  haloacid dehalogenase-like hydrolase  37.16 
 
 
225 aa  107  2e-22  Jannaschia sp. CCS1  Bacteria  normal  0.0114019  normal 
 
 
-
 
NC_008817  P9515_09281  putative CbbY-like protein  33.51 
 
 
249 aa  103  3e-21  Prochlorococcus marinus str. MIT 9515  Bacteria  normal  n/a   
 
 
-
 
NC_011679  PHATR_13261  predicted protein  32.91 
 
 
238 aa  101  1e-20  Phaeodactylum tricornutum CCAP 1055/1  Eukaryota  normal  0.684824  n/a   
 
 
-
 
NC_010338  Caul_0320  HAD family hydrolase  39.39 
 
 
241 aa  89  6e-17  Caulobacter sp. K31  Bacteria  normal  0.288784  normal 
 
 
-
 
NC_013205  Aaci_2469  HAD-superfamily hydrolase, subfamily IA, variant 3  32.27 
 
 
224 aa  89  7e-17  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.618161  n/a   
 
 
-
 
NC_012793  GWCH70_1743  HAD-superfamily hydrolase, subfamily IA, variant 3  29.6 
 
 
227 aa  85.5  7e-16  Geobacillus sp. WCH70  Bacteria  normal  0.293469  n/a   
 
 
-
 
NC_013457  VEA_000391  2-deoxyglucose-6-phosphate hydrolase YniC  27.65 
 
 
218 aa  85.1  9e-16  Vibrio sp. Ex25  Bacteria  normal  0.0106831  n/a   
 
 
-
 
NC_014230  CA2559_12643  Predicted phosphatase  29.09 
 
 
216 aa  84.7  0.000000000000001  Croceibacter atlanticus HTCC2559  Bacteria  normal  0.128583  n/a   
 
 
-
 
NC_011831  Cagg_1516  HAD-superfamily hydrolase, subfamily IA, variant 3  33.33 
 
 
227 aa  84.3  0.000000000000002  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_009441  Fjoh_2690  HAD family hydrolase  28.82 
 
 
221 aa  83.2  0.000000000000003  Flavobacterium johnsoniae UW101  Bacteria  normal  0.365385  n/a   
 
 
-
 
NC_013457  VEA_001299  CbbY family protein  32.35 
 
 
216 aa  82  0.000000000000009  Vibrio sp. Ex25  Bacteria  normal  0.916657  n/a   
 
 
-
 
NC_010581  Bind_0935  HAD family hydrolase  31.02 
 
 
235 aa  81.6  0.00000000000001  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.941543  normal 
 
 
-
 
NC_009486  Tpet_1517  HAD family hydrolase  32.64 
 
 
216 aa  80.9  0.00000000000002  Thermotoga petrophila RKU-1  Bacteria  normal  n/a   
 
 
-
 
NC_013522  Taci_1058  HAD-superfamily hydrolase, subfamily IA, variant 3  32.41 
 
 
217 aa  80.5  0.00000000000002  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  0.918987  n/a   
 
 
-
 
NC_010483  TRQ2_1566  HAD family hydrolase  33.33 
 
 
216 aa  80.9  0.00000000000002  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_7216  putative haloacid dehalogenase-like hydrolase  36.41 
 
 
223 aa  80.5  0.00000000000002  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_013526  Tter_2485  HAD-superfamily hydrolase, subfamily IA, variant 3  30.33 
 
 
238 aa  80.1  0.00000000000003  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_009338  Mflv_5013  hydrolase  33.66 
 
 
255 aa  80.1  0.00000000000003  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.376254  normal  0.29251 
 
 
-
 
NC_009784  VIBHAR_05174  phosphoglycolate phosphatase  32.35 
 
 
256 aa  79.7  0.00000000000004  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_011071  Smal_0452  HAD-superfamily hydrolase, subfamily IA, variant 3  33 
 
 
227 aa  79.7  0.00000000000004  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_0284  2-deoxyglucose-6-phosphatase  29.52 
 
 
221 aa  79.3  0.00000000000006  Shewanella woodyi ATCC 51908  Bacteria  normal  hitchhiker  0.00458991 
 
 
-
 
NC_010320  Teth514_1040  HAD family hydrolase  27.07 
 
 
226 aa  79  0.00000000000007  Thermoanaerobacter sp. X514  Bacteria  hitchhiker  0.00000171478  n/a   
 
 
-
 
NC_014210  Ndas_1550  HAD-superfamily hydrolase, subfamily IA, variant 3  34.3 
 
 
249 aa  79  0.00000000000007  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.204001 
 
 
-
 
NC_008146  Mmcs_1057  haloacid dehalogenase-like hydrolase  31.98 
 
 
266 aa  79  0.00000000000007  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_1073  hydrolase  31.98 
 
 
266 aa  79  0.00000000000007  Mycobacterium sp. KMS  Bacteria  normal  0.48254  normal  0.11925 
 
 
-
 
NC_009077  Mjls_1084  hydrolase  31.98 
 
 
266 aa  79  0.00000000000007  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_003910  CPS_0979  putative beta-phosphoglucomutase  31.09 
 
 
221 aa  77.8  0.0000000000001  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_3373  HAD-superfamily hydrolase, subfamily IA, variant 3  34.39 
 
 
231 aa  77.4  0.0000000000002  Cyanothece sp. PCC 7425  Bacteria  normal  0.154909  normal  0.78527 
 
 
-
 
NC_013517  Sterm_2267  HAD-superfamily hydrolase, subfamily IA, variant 3  29.53 
 
 
219 aa  77.4  0.0000000000002  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_1614  HAD-superfamily hydrolase, subfamily IA, variant 3  27.54 
 
 
224 aa  77.4  0.0000000000002  Geobacter lovleyi SZ  Bacteria  normal  0.0147527  n/a   
 
 
-
 
NC_008726  Mvan_1359  hydrolase  31.9 
 
 
255 aa  77.4  0.0000000000002  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.0172226  normal 
 
 
-
 
NC_010003  Pmob_0452  HAD family hydrolase  27.31 
 
 
221 aa  77  0.0000000000003  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_010003  Pmob_0141  beta-phosphoglucomutase  28.93 
 
 
214 aa  76.3  0.0000000000004  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_00430  beta-phosphoglucomutase  29.53 
 
 
216 aa  76.6  0.0000000000004  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_5916  HAD family hydrolase  32.49 
 
 
218 aa  76.3  0.0000000000005  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0345843  normal  0.0351614 
 
 
-
 
NC_013162  Coch_0471  HAD-superfamily hydrolase, subfamily IA, variant 3  24.2 
 
 
210 aa  75.9  0.0000000000005  Capnocytophaga ochracea DSM 7271  Bacteria  normal  n/a   
 
 
-
 
NC_014212  Mesil_0179  HAD-superfamily hydrolase, subfamily IA, variant 3  31.22 
 
 
218 aa  75.9  0.0000000000005  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_010577  XfasM23_0479  HAD family hydrolase  31.71 
 
 
225 aa  75.9  0.0000000000006  Xylella fastidiosa M23  Bacteria  normal  n/a   
 
 
-
 
NC_010513  Xfasm12_0542  hydrolase  32.02 
 
 
225 aa  75.5  0.0000000000007  Xylella fastidiosa M12  Bacteria  normal  0.491879  n/a   
 
 
-
 
NC_009456  VC0395_0037  haloacid dehalogenase/epoxide hydrolase family protein  31.31 
 
 
219 aa  75.5  0.0000000000008  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_3766  HAD family hydrolase  33.17 
 
 
229 aa  75.5  0.0000000000008  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.481305  normal  0.0631414 
 
 
-
 
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