| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_3134 |
|---|
| Symbol | |
|---|
| ID | 8254252 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | + |
|---|
| Start bp | 3742488 |
|---|
| End bp | 3743147 |
|---|
| Gene Length | 660 bp |
|---|
| Protein Length | 219 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 644936787 |
|---|
| Product | HAD-superfamily hydrolase, subfamily IA, variant 3 |
|---|
| Protein accession | YP_003093392 |
|---|
| Protein GI | 255533020 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0637] Predicted phosphatase/phosphohexomutase |
|---|
| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.833655 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATAAAG AAGTTGCTGT CATTTTCGAC ATGGATGGTG TGATCTGCCA TACCAATCCC
TATCATTCCC TCGCTTTCCG TACATTTTTT TCAGGCCATA ACCTTAACCC TACCGACGAG
GAATTTGCAC AGCATATGTA CGGCAAAAGC AACAGCTACA TTCTCAGTCA TTTTTTTAAA
AGACCTGTAT CCGGAGATGA ACTTTCGCAA ATGGAACAGG AAAAAGAAGG CTTGTTCAGA
AAAATTTATG AACCACATAT AGAACCCATT GCAGGAATTG TAGCCTTCAT AGCTGATTTA
GCTCAGAATG GGGTAAAACT TGGTGTAGCA ACCTCTGCCC CCTATGCCAA TCTGGAGCTG
ATCCTTGGTA AGATCGACAT CCGCGAACAG CTCGGCTCTA TCCTGGCCAG CGAAGATGTT
AAAAAACACA AACCCGATCC TGAAGTATAC TTAAGTTCTG CCAAAAACCT GGGTGTTTTA
CCAGAAAACT GCCTCGTTTT TGAAGATTCC TTTTCCGGCG TTTCTGCCGC ATTAAATGCG
GGCATGAAAG TAGTTGGCGT ACTCAGTTCA CATTCCAAAG CAGAACTTCC CCCATGCAGC
TTATACATCG AAGATTATAC GGACCTGTCT TATGACAAGA TCAGCAATCT GTTTAAATAG
|
|---|
| Protein sequence | MNKEVAVIFD MDGVICHTNP YHSLAFRTFF SGHNLNPTDE EFAQHMYGKS NSYILSHFFK
RPVSGDELSQ MEQEKEGLFR KIYEPHIEPI AGIVAFIADL AQNGVKLGVA TSAPYANLEL
ILGKIDIREQ LGSILASEDV KKHKPDPEVY LSSAKNLGVL PENCLVFEDS FSGVSAALNA
GMKVVGVLSS HSKAELPPCS LYIEDYTDLS YDKISNLFK
|
|---|
| |