More than 300 homologs were found in PanDaTox collection
for query gene Gbem_1871 on replicon NC_011146
Organism: Geobacter bemidjiensis Bem



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011146  Gbem_1871  HAD-superfamily hydrolase, subfamily IA, variant 3  100 
 
 
227 aa  448  1e-125  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_1179  HAD-superfamily hydrolase, subfamily IA, variant 3  67.43 
 
 
224 aa  296  2e-79  Geobacter sp. M21  Bacteria  n/a    hitchhiker  2.0108500000000004e-18 
 
 
-
 
NC_011146  Gbem_3082  HAD-superfamily hydrolase, subfamily IA, variant 3  66.82 
 
 
224 aa  290  9e-78  Geobacter bemidjiensis Bem  Bacteria  normal  0.48861  n/a   
 
 
-
 
NC_002939  GSU1839  HAD superfamily hydrolase  62.56 
 
 
228 aa  268  5e-71  Geobacter sulfurreducens PCA  Bacteria  normal  0.605398  n/a   
 
 
-
 
NC_007517  Gmet_1348  HAD family hydrolase  60.09 
 
 
226 aa  263  2e-69  Geobacter metallireducens GS-15  Bacteria  normal  0.523514  hitchhiker  0.0000000193697 
 
 
-
 
NC_009483  Gura_2233  HAD family hydrolase  59.46 
 
 
225 aa  261  8.999999999999999e-69  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_008609  Ppro_1749  HAD family hydrolase  54.5 
 
 
227 aa  228  8e-59  Pelobacter propionicus DSM 2379  Bacteria  normal  0.109928  n/a   
 
 
-
 
NC_010814  Glov_1614  HAD-superfamily hydrolase, subfamily IA, variant 3  52.09 
 
 
224 aa  223  3e-57  Geobacter lovleyi SZ  Bacteria  normal  0.0147527  n/a   
 
 
-
 
NC_008554  Sfum_3315  HAD family hydrolase  46.54 
 
 
242 aa  183  2.0000000000000003e-45  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal  0.354727 
 
 
-
 
NC_011884  Cyan7425_1738  HAD-superfamily hydrolase, subfamily IA, variant 3  34.84 
 
 
235 aa  120  1.9999999999999998e-26  Cyanothece sp. PCC 7425  Bacteria  normal  0.324615  normal  0.173582 
 
 
-
 
NC_007413  Ava_3420  HAD family hydrolase  34.23 
 
 
242 aa  118  9.999999999999999e-26  Anabaena variabilis ATCC 29413  Bacteria  normal  0.964625  normal 
 
 
-
 
NC_011729  PCC7424_4325  HAD-superfamily hydrolase, subfamily IA, variant 3  30.13 
 
 
234 aa  117  9.999999999999999e-26  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_006369  lpl1096  hypothetical protein  30.23 
 
 
222 aa  116  3e-25  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_006368  lpp1093  hypothetical protein  29.63 
 
 
222 aa  113  2.0000000000000002e-24  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_014248  Aazo_1451  HAD superfamily hydrolase  31.58 
 
 
241 aa  112  3e-24  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_011726  PCC8801_4038  HAD-superfamily hydrolase, subfamily IA, variant 3  31.56 
 
 
230 aa  112  6e-24  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013161  Cyan8802_4075  HAD-superfamily hydrolase, subfamily IA, variant 3  31.11 
 
 
230 aa  110  2.0000000000000002e-23  Cyanothece sp. PCC 8802  Bacteria  normal  0.280264  normal 
 
 
-
 
NC_013552  DhcVS_338  hypothetical protein  33.02 
 
 
456 aa  100  2e-20  Dehalococcoides sp. VS  Bacteria  hitchhiker  0.00693249  n/a   
 
 
-
 
NC_002936  DET0395  glycoprotease family protein/hydrolase, beta-phosphoglucomutase family  32.09 
 
 
456 aa  98.6  7e-20  Dehalococcoides ethenogenes 195  Bacteria  normal  n/a   
 
 
-
 
NC_009455  DehaBAV1_0374  HAD family hydrolase  31.46 
 
 
456 aa  96.3  3e-19  Dehalococcoides sp. BAV1  Bacteria  hitchhiker  0.0000852801  n/a   
 
 
-
 
NC_008312  Tery_1995  HAD family hydrolase  31.67 
 
 
231 aa  96.3  3e-19  Trichodesmium erythraeum IMS101  Bacteria  normal  0.133986  normal 
 
 
-
 
NC_007413  Ava_4630  HAD family hydrolase  31.31 
 
 
225 aa  94.7  1e-18  Anabaena variabilis ATCC 29413  Bacteria  normal  hitchhiker  0.00554039 
 
 
-
 
NC_010003  Pmob_0452  HAD family hydrolase  26.58 
 
 
221 aa  91.7  9e-18  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_0226  HAD family hydrolase  30.32 
 
 
218 aa  90.9  1e-17  Geobacter metallireducens GS-15  Bacteria  normal  unclonable  4.68138e-23 
 
 
-
 
NC_011831  Cagg_1516  HAD-superfamily hydrolase, subfamily IA, variant 3  35.43 
 
 
227 aa  91.3  1e-17  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_013205  Aaci_2469  HAD-superfamily hydrolase, subfamily IA, variant 3  36.27 
 
 
224 aa  89  6e-17  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.618161  n/a   
 
 
-
 
NC_011729  PCC7424_4434  HAD-superfamily hydrolase, subfamily IA, variant 3  28.26 
 
 
217 aa  88.6  7e-17  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_011894  Mnod_0323  HAD-superfamily hydrolase, subfamily IA, variant 3  33.18 
 
 
258 aa  87.4  2e-16  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_013525  Tter_0876  HAD-superfamily hydrolase, subfamily IA, variant 3  31.16 
 
 
215 aa  87.4  2e-16  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_009441  Fjoh_2777  HAD family hydrolase  28.64 
 
 
220 aa  86.3  4e-16  Flavobacterium johnsoniae UW101  Bacteria  normal  0.0810098  n/a   
 
 
-
 
NC_013131  Caci_2412  HAD-superfamily hydrolase, subfamily IA, variant 3  32.42 
 
 
222 aa  85.9  4e-16  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_014213  Mesil_3262  hypothetical protein  33.2 
 
 
250 aa  86.3  4e-16  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.343145 
 
 
-
 
NC_013947  Snas_4498  HAD-superfamily hydrolase subfamily IA, variant 3  35.53 
 
 
223 aa  86.3  4e-16  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.511661  normal  0.0143777 
 
 
-
 
NC_010320  Teth514_1040  HAD family hydrolase  31.02 
 
 
226 aa  85.9  4e-16  Thermoanaerobacter sp. X514  Bacteria  hitchhiker  0.00000171478  n/a   
 
 
-
 
NC_007355  Mbar_A0742  beta-phosphoglucomutase  26.76 
 
 
214 aa  85.1  7e-16  Methanosarcina barkeri str. Fusaro  Archaea  normal  normal 
 
 
-
 
NC_011989  Avi_2594  hydrolase  28.04 
 
 
209 aa  85.1  8e-16  Agrobacterium vitis S4  Bacteria  normal  0.537934  n/a   
 
 
-
 
NC_008609  Ppro_2888  HAD family hydrolase  28.37 
 
 
215 aa  85.1  8e-16  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_10160  HAD-superfamily hydrolase, subfamily IA, variant 3  30.63 
 
 
217 aa  84.3  0.000000000000001  Halothermothrix orenii H 168  Bacteria  normal  0.64096  n/a   
 
 
-
 
NC_009441  Fjoh_1356  HAD family hydrolase  25.12 
 
 
221 aa  84.7  0.000000000000001  Flavobacterium johnsoniae UW101  Bacteria  normal  0.14421  n/a   
 
 
-
 
NC_011059  Paes_0473  HAD-superfamily hydrolase, subfamily IA, variant 3  28.64 
 
 
211 aa  84.7  0.000000000000001  Prosthecochloris aestuarii DSM 271  Bacteria  hitchhiker  0.0000148872  normal 
 
 
-
 
CP001637  EcDH1_0994  beta-phosphoglucomutase family hydrolase  30.89 
 
 
188 aa  84  0.000000000000002  Escherichia coli DH1  Bacteria  hitchhiker  0.000000122872  n/a   
 
 
-
 
NC_010172  Mext_0990  HAD family hydrolase  32.2 
 
 
253 aa  84  0.000000000000002  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.480228 
 
 
-
 
NC_011757  Mchl_0953  HAD-superfamily hydrolase, subfamily IA, variant 3  32.2 
 
 
253 aa  84  0.000000000000002  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010498  EcSMS35_2812  fructose-1-phosphatase  31.41 
 
 
188 aa  84  0.000000000000002  Escherichia coli SMS-3-5  Bacteria  hitchhiker  0.0000062421  hitchhiker  0.000278868 
 
 
-
 
NC_009952  Dshi_1676  HAD-like hydrolase  32.83 
 
 
219 aa  84  0.000000000000002  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.653252  normal  0.340852 
 
 
-
 
NC_008527  LACR_0484  HAD family sugar phosphatase  28.95 
 
 
221 aa  84  0.000000000000002  Lactococcus lactis subsp. cremoris SK11  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_3936  fructose-1-phosphatase  31.41 
 
 
188 aa  84  0.000000000000002  Escherichia coli O157:H7 str. EC4115  Bacteria  hitchhiker  0.00199329  normal  0.845186 
 
 
-
 
NC_009801  EcE24377A_2973  fructose-1-phosphatase  31.41 
 
 
188 aa  84  0.000000000000002  Escherichia coli E24377A  Bacteria  hitchhiker  0.000000000945965  n/a   
 
 
-
 
CP001509  ECD_02545  predicted hydrolase  30.89 
 
 
188 aa  83.2  0.000000000000003  Escherichia coli BL21(DE3)  Bacteria  hitchhiker  0.00348702  n/a   
 
 
-
 
NC_009800  EcHS_A2826  fructose-1-phosphatase  30.89 
 
 
188 aa  83.2  0.000000000000003  Escherichia coli HS  Bacteria  hitchhiker  0.000000000139827  n/a   
 
 
-
 
NC_009654  Mmwyl1_2542  HAD family hydrolase  29.38 
 
 
214 aa  83.2  0.000000000000003  Marinomonas sp. MWYL1  Bacteria  normal  normal  0.214098 
 
 
-
 
NC_012892  B21_02510  hypothetical protein  30.89 
 
 
188 aa  83.2  0.000000000000003  Escherichia coli BL21  Bacteria  hitchhiker  0.00621233  n/a   
 
 
-
 
NC_010468  EcolC_1017  fructose-1-phosphatase  30.89 
 
 
188 aa  83.2  0.000000000000003  Escherichia coli ATCC 8739  Bacteria  normal  0.0370364  hitchhiker  0.0042534 
 
 
-
 
NC_013730  Slin_0267  HAD-superfamily hydrolase, subfamily IA, variant 3  29 
 
 
220 aa  82.8  0.000000000000004  Spirosoma linguale DSM 74  Bacteria  normal  0.583067  normal  0.103324 
 
 
-
 
NC_013132  Cpin_5088  beta-phosphoglucomutase  29.33 
 
 
219 aa  82.8  0.000000000000004  Chitinophaga pinensis DSM 2588  Bacteria  decreased coverage  0.00016924  normal  0.408522 
 
 
-
 
NC_008312  Tery_0409  HAD family hydrolase  25.85 
 
 
228 aa  82.8  0.000000000000004  Trichodesmium erythraeum IMS101  Bacteria  normal  normal 
 
 
-
 
NC_014248  Aazo_4442  HAD superfamily hydrolase  27.96 
 
 
228 aa  82.4  0.000000000000005  'Nostoc azollae' 0708  Bacteria  normal  0.536318  n/a   
 
 
-
 
NC_013730  Slin_0811  HAD-superfamily hydrolase, subfamily IA, variant 3  29.44 
 
 
225 aa  82.4  0.000000000000005  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.332678 
 
 
-
 
NC_013946  Mrub_0251  HAD-superfamily hydrolase subfamily IA, variant 3  31.37 
 
 
216 aa  82.4  0.000000000000006  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.822561 
 
 
-
 
NC_012793  GWCH70_1743  HAD-superfamily hydrolase, subfamily IA, variant 3  28.72 
 
 
227 aa  82  0.000000000000008  Geobacillus sp. WCH70  Bacteria  normal  0.293469  n/a   
 
 
-
 
NC_012034  Athe_0397  beta-phosphoglucomutase family hydrolase  25.55 
 
 
223 aa  82  0.000000000000008  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_007955  Mbur_1556  HAD family hydrolase  28.71 
 
 
232 aa  81.6  0.000000000000009  Methanococcoides burtonii DSM 6242  Archaea  decreased coverage  0.0000000000353855  n/a   
 
 
-
 
NC_007347  Reut_A0142  HAD family hydrolase  32.65 
 
 
235 aa  81.3  0.00000000000001  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_010658  SbBS512_E3186  fructose-1-phosphatase  31.94 
 
 
187 aa  81.3  0.00000000000001  Shigella boydii CDC 3083-94  Bacteria  hitchhiker  0.00000000354509  n/a   
 
 
-
 
NC_008312  Tery_2465  HAD family hydrolase  24.51 
 
 
220 aa  80.9  0.00000000000001  Trichodesmium erythraeum IMS101  Bacteria  normal  normal 
 
 
-
 
NC_012856  Rpic12D_0130  HAD-superfamily hydrolase, subfamily IA, variant 3  32.82 
 
 
232 aa  80.5  0.00000000000002  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_007406  Nwi_0553  HAD family hydrolase  30.84 
 
 
247 aa  80.5  0.00000000000002  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal 
 
 
-
 
NC_010682  Rpic_0122  HAD-superfamily hydrolase, subfamily IA, variant 3  32.82 
 
 
229 aa  80.5  0.00000000000002  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_0931  HAD-superfamily hydrolase, subfamily IA, variant 3  30.23 
 
 
253 aa  80.5  0.00000000000002  Methylobacterium populi BJ001  Bacteria  normal  0.22053  normal  0.844847 
 
 
-
 
NC_009012  Cthe_3073  HAD family hydrolase  29.52 
 
 
223 aa  80.9  0.00000000000002  Clostridium thermocellum ATCC 27405  Bacteria  hitchhiker  0.00582956  n/a   
 
 
-
 
NC_003295  RSc0271  hypothetical protein  34.36 
 
 
229 aa  79.7  0.00000000000003  Ralstonia solanacearum GMI1000  Bacteria  normal  0.586518  normal 
 
 
-
 
NC_009784  VIBHAR_05174  phosphoglycolate phosphatase  32.31 
 
 
256 aa  79.7  0.00000000000003  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013037  Dfer_2943  HAD-superfamily hydrolase, subfamily IA, variant 3  27.36 
 
 
218 aa  79.3  0.00000000000004  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.86932  normal 
 
 
-
 
NC_013595  Sros_5916  HAD family hydrolase  32.87 
 
 
218 aa  79  0.00000000000005  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0345843  normal  0.0351614 
 
 
-
 
NC_007964  Nham_1067  HAD family hydrolase  33.01 
 
 
249 aa  79  0.00000000000005  Nitrobacter hamburgensis X14  Bacteria  normal  0.307396  n/a   
 
 
-
 
NC_008781  Pnap_2743  HAD family hydrolase  32.31 
 
 
227 aa  79.3  0.00000000000005  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.994994  normal  0.0511558 
 
 
-
 
NC_007519  Dde_2523  HAD family hydrolase  30.93 
 
 
219 aa  79  0.00000000000006  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  hitchhiker  0.000000000119514  n/a   
 
 
-
 
NC_014165  Tbis_1853  HAD-superfamily hydrolase  32.49 
 
 
213 aa  79  0.00000000000006  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_010831  Cphamn1_0520  HAD-superfamily hydrolase, subfamily IA, variant 3  31.03 
 
 
217 aa  78.6  0.00000000000007  Chlorobium phaeobacteroides BS1  Bacteria  normal  normal 
 
 
-
 
NC_005945  BAS4107  HAD superfamily hydrolase  30.05 
 
 
221 aa  78.6  0.00000000000007  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A0893  fructose-1-phosphatase  28.65 
 
 
188 aa  78.6  0.00000000000007  Yersinia pestis Angola  Bacteria  hitchhiker  0.000000160736  normal 
 
 
-
 
NC_007530  GBAA_4427  HAD superfamily hydrolase  30.05 
 
 
221 aa  78.6  0.00000000000007  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_009708  YpsIP31758_3236  fructose-1-phosphatase  28.65 
 
 
188 aa  78.6  0.00000000000007  Yersinia pseudotuberculosis IP 31758  Bacteria  hitchhiker  0.00000000000293158  n/a   
 
 
-
 
NC_010465  YPK_3371  fructose-1-phosphatase  28.65 
 
 
188 aa  78.6  0.00000000000007  Yersinia pseudotuberculosis YPIII  Bacteria  hitchhiker  0.0000166362  n/a   
 
 
-
 
NC_013946  Mrub_2205  HAD-superfamily hydrolase subfamily IA, variant 3  28.86 
 
 
228 aa  78.6  0.00000000000007  Meiothermus ruber DSM 1279  Bacteria  normal  0.322675  normal 
 
 
-
 
NC_014212  Mesil_0482  HAD-superfamily hydrolase, subfamily IA, variant 3  31.37 
 
 
213 aa  78.6  0.00000000000008  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_010338  Caul_0320  HAD family hydrolase  29.85 
 
 
241 aa  78.6  0.00000000000008  Caulobacter sp. K31  Bacteria  normal  0.288784  normal 
 
 
-
 
NC_011071  Smal_0452  HAD-superfamily hydrolase, subfamily IA, variant 3  30 
 
 
227 aa  78.2  0.00000000000009  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal 
 
 
-
 
NC_013169  Ksed_13910  haloacid dehalogenase superfamily protein, subfamily IA, variant 3 with third motif having DD or ED  34.38 
 
 
232 aa  78.2  0.00000000000009  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.491881  normal 
 
 
-
 
NC_010505  Mrad2831_3556  HAD family hydrolase  32.37 
 
 
262 aa  78.2  0.00000000000009  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_011059  Paes_2237  beta-phosphoglucomutase family hydrolase  27.4 
 
 
254 aa  78.2  0.0000000000001  Prosthecochloris aestuarii DSM 271  Bacteria  normal  0.202357  normal 
 
 
-
 
NC_013595  Sros_7385  HAD-superfamily hydrolase, subfamily IA  34.85 
 
 
248 aa  77.8  0.0000000000001  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_008148  Rxyl_2101  HAD family hydrolase  32.61 
 
 
231 aa  77.8  0.0000000000001  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_013522  Taci_1058  HAD-superfamily hydrolase, subfamily IA, variant 3  33.17 
 
 
217 aa  77.8  0.0000000000001  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  0.918987  n/a   
 
 
-
 
NC_008532  STER_0426  HAD family sugar phosphatase  27.56 
 
 
212 aa  78.2  0.0000000000001  Streptococcus thermophilus LMD-9  Bacteria  hitchhiker  0.0044369  n/a   
 
 
-
 
NC_002939  GSU0184  HAD family hydrolase  30.39 
 
 
215 aa  77  0.0000000000002  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_3945  HAD superfamily hydrolase  29.56 
 
 
221 aa  77.4  0.0000000000002  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_013457  VEA_001299  CbbY family protein  32.63 
 
 
216 aa  77.4  0.0000000000002  Vibrio sp. Ex25  Bacteria  normal  0.916657  n/a   
 
 
-
 
NC_008639  Cpha266_2701  beta-phosphoglucomutase family hydrolase  30.85 
 
 
232 aa  77  0.0000000000002  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_014212  Mesil_0179  HAD-superfamily hydrolase, subfamily IA, variant 3  32.43 
 
 
218 aa  76.3  0.0000000000003  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>