More than 300 homologs were found in PanDaTox collection
for query gene Avi_9634 on replicon NC_011991
Organism: Agrobacterium vitis S4



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011991  Avi_9634  3-isopropylmalate dehydratase small subunit  100 
 
 
232 aa  488  1e-137  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_009511  Swit_4326  3-isopropylmalate dehydratase, small subunit  40.91 
 
 
210 aa  164  8e-40  Sphingomonas wittichii RW1  Bacteria  normal  normal 
 
 
-
 
NC_009487  SaurJH9_2097  isopropylmalate isomerase small subunit  44.09 
 
 
190 aa  152  4e-36  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  n/a   
 
 
-
 
NC_009632  SaurJH1_2134  isopropylmalate isomerase small subunit  44.09 
 
 
190 aa  152  4e-36  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  n/a   
 
 
-
 
NC_002976  SERP1672  isopropylmalate isomerase small subunit  43.39 
 
 
189 aa  148  8e-35  Staphylococcus epidermidis RP62A  Bacteria  normal  n/a   
 
 
-
 
NC_007511  Bcep18194_B2132  isopropylmalate isomerase small subunit  37.98 
 
 
216 aa  145  7.0000000000000006e-34  Burkholderia sp. 383  Bacteria  normal  normal  0.0198572 
 
 
-
 
NC_013421  Pecwa_1295  3-isopropylmalate dehydratase, small subunit  38.31 
 
 
204 aa  144  8.000000000000001e-34  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_008061  Bcen_4416  isopropylmalate isomerase small subunit  37.98 
 
 
216 aa  143  2e-33  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_010515  Bcenmc03_3577  isopropylmalate isomerase small subunit  37.98 
 
 
216 aa  143  2e-33  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.613877 
 
 
-
 
NC_008543  Bcen2424_3951  isopropylmalate isomerase small subunit  37.98 
 
 
216 aa  143  2e-33  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.319749 
 
 
-
 
NC_007493  RSP_0862  isopropylmalate isomerase small subunit  37.88 
 
 
201 aa  143  3e-33  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_010086  Bmul_4628  isopropylmalate isomerase small subunit  38.16 
 
 
216 aa  143  3e-33  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_009049  Rsph17029_2521  isopropylmalate isomerase small subunit  37.88 
 
 
201 aa  143  3e-33  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.0588786  normal 
 
 
-
 
NC_009428  Rsph17025_0159  isopropylmalate isomerase small subunit  37.37 
 
 
201 aa  142  4e-33  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.949563  normal 
 
 
-
 
NC_010552  BamMC406_3846  isopropylmalate isomerase small subunit  37.68 
 
 
216 aa  142  5e-33  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.817461 
 
 
-
 
NC_007643  Rru_A1190  isopropylmalate isomerase small subunit  37.25 
 
 
207 aa  142  5e-33  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_008391  Bamb_3342  isopropylmalate isomerase small subunit  37.68 
 
 
216 aa  142  5e-33  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_008254  Meso_3269  isopropylmalate isomerase small subunit  37.56 
 
 
209 aa  141  7e-33  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_007347  Reut_A2312  isopropylmalate isomerase small subunit  37.86 
 
 
216 aa  141  9e-33  Ralstonia eutropha JMP134  Bacteria  normal  0.845153  n/a   
 
 
-
 
NC_010338  Caul_0508  isopropylmalate isomerase small subunit  38.31 
 
 
207 aa  140  9.999999999999999e-33  Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_009636  Smed_3028  isopropylmalate isomerase small subunit  37.69 
 
 
201 aa  140  9.999999999999999e-33  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.295047 
 
 
-
 
NC_003295  RSc1989  isopropylmalate isomerase small subunit  37.38 
 
 
216 aa  140  1.9999999999999998e-32  Ralstonia solanacearum GMI1000  Bacteria  normal  0.108393  normal  0.122057 
 
 
-
 
NC_009078  BURPS1106A_A2314  isopropylmalate isomerase small subunit  37.86 
 
 
216 aa  140  1.9999999999999998e-32  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_006349  BMAA1727  isopropylmalate isomerase small subunit  37.86 
 
 
216 aa  140  1.9999999999999998e-32  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_009079  BMA10247_A0522  isopropylmalate isomerase small subunit  37.86 
 
 
216 aa  140  1.9999999999999998e-32  Burkholderia mallei NCTC 10247  Bacteria  normal  0.503105  n/a   
 
 
-
 
NC_008784  BMASAVP1_1642  isopropylmalate isomerase small subunit  37.86 
 
 
216 aa  140  1.9999999999999998e-32  Burkholderia mallei SAVP1  Bacteria  normal  0.865269  n/a   
 
 
-
 
NC_007435  BURPS1710b_A0776  isopropylmalate isomerase small subunit  37.86 
 
 
216 aa  140  1.9999999999999998e-32  Burkholderia pseudomallei 1710b  Bacteria  normal  0.0211151  n/a   
 
 
-
 
NC_008835  BMA10229_1851  isopropylmalate isomerase small subunit  37.86 
 
 
216 aa  140  1.9999999999999998e-32  Burkholderia mallei NCTC 10229  Bacteria  normal  0.30576  n/a   
 
 
-
 
NC_009720  Xaut_1185  isopropylmalate isomerase small subunit  37.76 
 
 
201 aa  140  1.9999999999999998e-32  Xanthobacter autotrophicus Py2  Bacteria  normal  0.840345  normal 
 
 
-
 
NC_009952  Dshi_0083  isopropylmalate isomerase small subunit  37.37 
 
 
201 aa  140  1.9999999999999998e-32  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.384389  normal  0.18722 
 
 
-
 
NC_009075  BURPS668_A2452  isopropylmalate isomerase small subunit  37.86 
 
 
216 aa  140  1.9999999999999998e-32  Burkholderia pseudomallei 668  Bacteria  normal  0.250936  n/a   
 
 
-
 
NC_012856  Rpic12D_1820  isopropylmalate isomerase small subunit  37.38 
 
 
216 aa  139  3.9999999999999997e-32  Ralstonia pickettii 12D  Bacteria  normal  0.656478  normal  0.647684 
 
 
-
 
NC_010682  Rpic_2144  isopropylmalate isomerase small subunit  37.38 
 
 
216 aa  139  3.9999999999999997e-32  Ralstonia pickettii 12J  Bacteria  normal  0.536498  normal 
 
 
-
 
NC_011989  Avi_4358  isopropylmalate isomerase small subunit  36.55 
 
 
201 aa  139  4.999999999999999e-32  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B3888  isopropylmalate isomerase small subunit  40.54 
 
 
193 aa  138  6e-32  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_013205  Aaci_2224  3-isopropylmalate dehydratase, small subunit  40.91 
 
 
202 aa  138  8.999999999999999e-32  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.724185  n/a   
 
 
-
 
NC_007650  BTH_II0673  isopropylmalate isomerase small subunit  37.2 
 
 
216 aa  137  1e-31  Burkholderia thailandensis E264  Bacteria  hitchhiker  0.000646407  n/a   
 
 
-
 
NC_010623  Bphy_4368  isopropylmalate isomerase small subunit  36.49 
 
 
217 aa  137  2e-31  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_011725  BCB4264_A1456  isopropylmalate isomerase small subunit  40 
 
 
193 aa  137  2e-31  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_008340  Mlg_1229  isopropylmalate isomerase small subunit  36.89 
 
 
218 aa  137  2e-31  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.975059  normal  0.103885 
 
 
-
 
NC_004311  BRA0883  isopropylmalate isomerase small subunit  36.55 
 
 
201 aa  136  3.0000000000000003e-31  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_007802  Jann_0123  isopropylmalate isomerase small subunit  36.87 
 
 
201 aa  135  4e-31  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_009504  BOV_A0827  isopropylmalate isomerase small subunit  36.55 
 
 
211 aa  135  4e-31  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_008825  Mpe_A2163  isopropylmalate isomerase small subunit  37.44 
 
 
216 aa  135  5e-31  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.242476 
 
 
-
 
NC_009654  Mmwyl1_2092  3-isopropylmalate dehydratase, small subunit  36.02 
 
 
216 aa  135  6.0000000000000005e-31  Marinomonas sp. MWYL1  Bacteria  normal  0.0181351  normal  0.809899 
 
 
-
 
NC_007908  Rfer_1794  isopropylmalate isomerase small subunit  37.74 
 
 
216 aa  135  6.0000000000000005e-31  Rhodoferax ferrireducens T118  Bacteria  normal  0.266254  n/a   
 
 
-
 
NC_010338  Caul_0215  isopropylmalate isomerase small subunit  36.73 
 
 
202 aa  135  6.0000000000000005e-31  Caulobacter sp. K31  Bacteria  normal  normal  0.20437 
 
 
-
 
NC_009484  Acry_2148  3-isopropylmalate dehydratase, small subunit  40.32 
 
 
207 aa  135  7.000000000000001e-31  Acidiphilium cryptum JF-5  Bacteria  normal  0.0323042  n/a   
 
 
-
 
NC_010676  Bphyt_6848  isopropylmalate isomerase small subunit  36.67 
 
 
217 aa  135  7.000000000000001e-31  Burkholderia phytofirmans PsJN  Bacteria  normal  0.0246289  normal  0.577423 
 
 
-
 
NC_011004  Rpal_0234  isopropylmalate isomerase small subunit  37.95 
 
 
201 aa  134  8e-31  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_012850  Rleg_4222  isopropylmalate isomerase small subunit  36.18 
 
 
202 aa  134  9e-31  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.233647 
 
 
-
 
NC_007952  Bxe_B2521  3-isopropylmalate dehydratase, small subunit  38.05 
 
 
210 aa  134  9.999999999999999e-31  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.0949356 
 
 
-
 
NC_007952  Bxe_B2888  isopropylmalate isomerase small subunit  36.19 
 
 
217 aa  134  9.999999999999999e-31  Burkholderia xenovorans LB400  Bacteria  normal  0.175281  normal 
 
 
-
 
NC_008228  Patl_2764  3-isopropylmalate dehydratase, small subunit  36.28 
 
 
221 aa  134  9.999999999999999e-31  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_1494  isopropylmalate isomerase small subunit  39.46 
 
 
193 aa  134  9.999999999999999e-31  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_005945  BAS1314  isopropylmalate isomerase small subunit  39.46 
 
 
193 aa  134  1.9999999999999998e-30  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_1287  isopropylmalate isomerase small subunit  39.46 
 
 
193 aa  133  1.9999999999999998e-30  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK1288  isopropylmalate isomerase small subunit  39.46 
 
 
193 aa  133  1.9999999999999998e-30  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_1423  isopropylmalate isomerase small subunit  39.46 
 
 
193 aa  134  1.9999999999999998e-30  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_007614  Nmul_A1919  isopropylmalate isomerase small subunit  37.56 
 
 
212 aa  133  1.9999999999999998e-30  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_0498  isopropylmalate isomerase small subunit  37.44 
 
 
201 aa  134  1.9999999999999998e-30  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.701221  normal 
 
 
-
 
NC_007964  Nham_3591  isopropylmalate isomerase small subunit  37.44 
 
 
201 aa  134  1.9999999999999998e-30  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_008686  Pden_2522  isopropylmalate isomerase small subunit  35.86 
 
 
201 aa  133  1.9999999999999998e-30  Paracoccus denitrificans PD1222  Bacteria  normal  0.68534  normal 
 
 
-
 
NC_007973  Rmet_2473  isopropylmalate isomerase small subunit  36.1 
 
 
216 aa  132  3e-30  Cupriavidus metallidurans CH34  Bacteria  normal  0.0929979  normal  0.412419 
 
 
-
 
NC_011992  Dtpsy_2585  isopropylmalate isomerase small subunit  36.67 
 
 
216 aa  133  3e-30  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_1564  isopropylmalate isomerase small subunit  35.58 
 
 
215 aa  133  3e-30  Marinobacter aquaeolei VT8  Bacteria  normal  0.126411  n/a   
 
 
-
 
NC_008782  Ajs_3232  isopropylmalate isomerase small subunit  36.67 
 
 
216 aa  133  3e-30  Acidovorax sp. JS42  Bacteria  normal  0.0869271  normal 
 
 
-
 
NC_007925  RPC_0230  isopropylmalate isomerase small subunit  36.41 
 
 
201 aa  132  3.9999999999999996e-30  Rhodopseudomonas palustris BisB18  Bacteria  normal  hitchhiker  0.00838951 
 
 
-
 
NC_008009  Acid345_2915  3-isopropylmalate dehydratase, small subunit  38.3 
 
 
195 aa  132  3.9999999999999996e-30  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_003909  BCE_1523  isopropylmalate isomerase small subunit  38.92 
 
 
193 aa  132  5e-30  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_0963  isopropylmalate isomerase small subunit  37.95 
 
 
200 aa  132  5e-30  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_1048  isopropylmalate isomerase small subunit  36.06 
 
 
216 aa  132  5e-30  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_011666  Msil_1147  3-isopropylmalate dehydratase, small subunit  35.86 
 
 
201 aa  132  5e-30  Methylocella silvestris BL2  Bacteria  n/a    hitchhiker  0.00108201 
 
 
-
 
NC_007778  RPB_0342  isopropylmalate isomerase small subunit  36.92 
 
 
201 aa  132  6e-30  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_2013  isopropylmalate isomerase small subunit  36.71 
 
 
212 aa  132  6e-30  Pseudomonas aeruginosa PA7  Bacteria  normal  0.0256303  n/a   
 
 
-
 
NC_011658  BCAH187_A1562  isopropylmalate isomerase small subunit  38.92 
 
 
193 aa  132  6e-30  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_0372  isopropylmalate isomerase small subunit  38.78 
 
 
201 aa  132  6.999999999999999e-30  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_007406  Nwi_2791  isopropylmalate isomerase small subunit  35.9 
 
 
201 aa  131  6.999999999999999e-30  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.204605  normal 
 
 
-
 
NC_008463  PA14_23760  isopropylmalate isomerase small subunit  36.71 
 
 
212 aa  132  6.999999999999999e-30  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.0177244 
 
 
-
 
NC_007005  Psyr_1984  isopropylmalate isomerase small subunit  37.38 
 
 
213 aa  131  7.999999999999999e-30  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.238956  normal  0.0387343 
 
 
-
 
NC_011757  Mchl_0340  isopropylmalate isomerase small subunit  38.78 
 
 
201 aa  131  7.999999999999999e-30  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_012791  Vapar_1421  isopropylmalate isomerase small subunit  36.84 
 
 
216 aa  131  7.999999999999999e-30  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_010172  Mext_0296  isopropylmalate isomerase small subunit  38.78 
 
 
201 aa  131  7.999999999999999e-30  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.447651 
 
 
-
 
NC_009668  Oant_3297  isopropylmalate isomerase small subunit  35.53 
 
 
201 aa  131  9e-30  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_009379  Pnuc_0766  isopropylmalate isomerase small subunit  36.1 
 
 
215 aa  131  9e-30  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_002977  MCA2064  isopropylmalate isomerase small subunit  38.5 
 
 
212 aa  130  1.0000000000000001e-29  Methylococcus capsulatus str. Bath  Bacteria  normal  0.851734  n/a   
 
 
-
 
NC_010513  Xfasm12_1541  isopropylmalate isomerase small subunit  35.44 
 
 
215 aa  130  1.0000000000000001e-29  Xylella fastidiosa M12  Bacteria  normal  0.466229  n/a   
 
 
-
 
NC_010581  Bind_0216  3-isopropylmalate dehydratase, small subunit  34.85 
 
 
201 aa  130  1.0000000000000001e-29  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.247072  normal  0.136168 
 
 
-
 
NC_008789  Hhal_1811  3-isopropylmalate dehydratase, small subunit  36.49 
 
 
240 aa  131  1.0000000000000001e-29  Halorhodospira halophila SL1  Bacteria  normal  0.382373  n/a   
 
 
-
 
NC_011205  SeD_A0362  3-isopropylmalate dehydratase, small subunit  37.19 
 
 
208 aa  130  2.0000000000000002e-29  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.485834  normal 
 
 
-
 
NC_007948  Bpro_3609  isopropylmalate isomerase small subunit  37.32 
 
 
216 aa  130  2.0000000000000002e-29  Polaromonas sp. JS666  Bacteria  normal  normal  0.329907 
 
 
-
 
NC_007952  Bxe_B0460  isopropylmalate isomerase small subunit  36.71 
 
 
206 aa  130  2.0000000000000002e-29  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_011369  Rleg2_3898  isopropylmalate isomerase small subunit  35.18 
 
 
202 aa  129  3e-29  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.106034  normal  0.223457 
 
 
-
 
NC_009524  PsycPRwf_1935  isopropylmalate isomerase small subunit  33.98 
 
 
216 aa  129  5.0000000000000004e-29  Psychrobacter sp. PRwf-1  Bacteria  normal  0.217033  normal 
 
 
-
 
NC_011083  SeHA_C0422  3-isopropylmalate dehydratase, small subunit  36.68 
 
 
208 aa  129  6e-29  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  hitchhiker  0.000414914 
 
 
-
 
NC_011080  SNSL254_A0371  3-isopropylmalate dehydratase, small subunit  36.68 
 
 
208 aa  129  6e-29  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_0863  isopropylmalate isomerase small subunit  37.86 
 
 
212 aa  129  6e-29  Dechloromonas aromatica RCB  Bacteria  hitchhiker  0.0000359889  hitchhiker  0.000927879 
 
 
-
 
NC_011901  Tgr7_1246  3-isopropylmalate dehydratase, small subunit  35.27 
 
 
212 aa  128  6e-29  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_1325  isopropylmalate isomerase small subunit  41.38 
 
 
193 aa  128  6e-29  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_010085  Nmar_0423  3-isopropylmalate dehydratase small subunit  37.7 
 
 
194 aa  129  6e-29  Nitrosopumilus maritimus SCM1  Archaea  n/a    normal  0.0497347 
 
 
-
 
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