Gene Smed_3028 details

Gene Information

• Locus tag: Smed_3028
• Symbol: leuD
• ID: 5323906
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Sinorhizobium medicae WSM419
• Kingdom: Bacteria
• Replicon accession: NC_009636
• Strand: +
• Start bp: 3177289
• End bp: 3177894
• Gene Length: 606 bp
• Protein Length: 201 aa
• Translation table: 11
• GC content: 60%
• IMG OID: 640791978
• Product: isopropylmalate isomerase small subunit
• Protein accession: YP_001328690
• Protein GI: 150398223
• COG category: [E] Amino acid transport and metabolism
• COG ID: [COG0066] 3-isopropylmalate dehydratase small subunit
• TIGRFAM ID: [TIGR00171] 3-isopropylmalate dehydratase, small subunit

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 22
• Fosmid unclonability p-value: 0.295047
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGGACAAGT TCGTCAAGCT CACCGGCGTT GCCGCTCCCC TGCCCGTCGT CAACATCGAC 
ACGGACATGA TCATTCCGAA GGACTACCTG AAGACGATCA AACGCACCGG TCTTGGCACG 
GGTCTTTTCG CGGAAGCGCG CTACAACGAG GACGGCAGCC CCAACCCGGA TTTCGTGCTC 
AACAAGCCCG CCTACCAGAA TGCAAAGATT CTCGTCGCCG GCGACAATTT CGGCTGTGGC 
TCCTCGCGCG AGCATGCTCC CTGGGCTCTT CTCGATTTCG GCATCCGCTG CGTCATCTCG 
ACCTCCTTCG CCGACATCTT CTACAACAAC TGTTTCAAGA ACGGCATCTT GCCCATCGTC 
GTCAGCCAGG AAGACCTCGA CAAGCTGATG GACGACGCGA GCCGCGGCTC CAACGCCGTC 
TTGACGATCG ATCTGGAAGC GCTGGAAATC ACCGGGCCGG ACGGCGGCTC GATCAAGTTC 
GAGGTCGATG CCTTCAAGCG CCATTGCCTG CTGAACGGCC TCGACGATAT CGGCCTCACG 
CTCGAAAAGG GTCGCTCCAT CGACAATTTC GAGAAGGCGA CCGCCGCCTC GCGCCCTTGG 
GCCTGA 

 

Protein sequence

MDKFVKLTGV AAPLPVVNID TDMIIPKDYL KTIKRTGLGT GLFAEARYNE DGSPNPDFVL 
NKPAYQNAKI LVAGDNFGCG SSREHAPWAL LDFGIRCVIS TSFADIFYNN CFKNGILPIV 
VSQEDLDKLM DDASRGSNAV LTIDLEALEI TGPDGGSIKF EVDAFKRHCL LNGLDDIGLT 
LEKGRSIDNF EKATAASRPW A