Gene Jann_0123 details

Gene Information

• Locus tag: Jann_0123
• Symbol: leuD
• ID: 3932559
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Jannaschia sp. CCS1
• Kingdom: Bacteria
• Replicon accession: NC_007802
• Strand: +
• Start bp: 113445
• End bp: 114050
• Gene Length: 606 bp
• Protein Length: 201 aa
• Translation table: 11
• GC content: 58%
• IMG OID: 637902464
• Product: isopropylmalate isomerase small subunit
• Protein accession: YP_508065
• Protein GI: 89052614
• COG category: [E] Amino acid transport and metabolism
• COG ID: [COG0066] 3-isopropylmalate dehydratase small subunit
• TIGRFAM ID: [TIGR00171] 3-isopropylmalate dehydratase, small subunit

Plasmid Coverage information

• Num covering plasmid clones: 29
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 18
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGGACAAGT TCACCACATT GACCGGCATT GCCGCTCCGA TGCCCCTGAT CAACGTCGAT 
ACCGACATGA TCATCCCCAA GCAATTCCTG AAGACGATCA AACGCTCGGG CCTTGGGGCG 
AACCTGTTTG ACGAGATGCG CTTTGACGAT GATGGCAACG AGATCCCCGA TTTCGTGCTG 
AACAAACCTG CATATCGTGA CGCGCAGATC CTTGTCGCGG GCGATAACTT CGGCTGTGGG 
TCGTCGCGGG AGCACGCCCC ATGGGCGCTT CTGGATTTCG GCATCCGCTG CGTGATCGCC 
ACGTCCTTCG CGGATATTTT CTACAACAAC TGCTTCAAGA ACGGCATCCT GCCCATCGTC 
CTGCTGCAAG AGCAGGTCGA TATGCTGATG GATGATGCCG AGCGCGGGGC GAATGCGGTC 
GTCTCCGTCG ATCTGGAAAG CCAGACAATC ACCGGCCCCG ATGGTGGCAC AATCAGCTTC 
GAGGTCGATG CATTCCGCAA GCATTGCCTG CTGAACGGCC TTGATGACAT CGGTCTGACG 
CTGGAAAAGG CCCCGTCGAT CAAGGCGTTT GAGGCCGAAG CCGCTCAGGC CCGCCCCTGG 
GTCTAG 

 

Protein sequence

MDKFTTLTGI AAPMPLINVD TDMIIPKQFL KTIKRSGLGA NLFDEMRFDD DGNEIPDFVL 
NKPAYRDAQI LVAGDNFGCG SSREHAPWAL LDFGIRCVIA TSFADIFYNN CFKNGILPIV 
LLQEQVDMLM DDAERGANAV VSVDLESQTI TGPDGGTISF EVDAFRKHCL LNGLDDIGLT 
LEKAPSIKAF EAEAAQARPW V