Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_4358 |
Symbol | leuD |
ID | 7387935 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | + |
Start bp | 3673325 |
End bp | 3673930 |
Gene Length | 606 bp |
Protein Length | 201 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 643653005 |
Product | isopropylmalate isomerase small subunit |
Protein accession | YP_002551176 |
Protein GI | 222150219 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0066] 3-isopropylmalate dehydratase small subunit |
TIGRFAM ID | [TIGR00171] 3-isopropylmalate dehydratase, small subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGAAAAGT TCACGAAGCT CACCGGGGTC GCGGCACCGC TGCCGGTCGT CAATATCGAT ACGGATATGA TCATTCCGAA GGATTACCTG AAGACGATCA AGCGCACTGG CCTTGGAACA GGCCTGTTTG CCGAAGCCCG CTATCATCAG GATGGCTCGA TCAATCAGGA TTTCGTGCTC AACAAACCAG CCTATCAAAA CGCCAAGATC CTGGTCGCTG GCGATAATTT TGGCTGCGGC TCCTCGCGTG AACATGCGCC TTGGGCTTTG CTGGATTTCG GCATCCGTTG CGTGATCTCC ACCAGCTTTG CCGATATTTT CTACAATAAC TGTTTCAAGA ACGGCATTCT GCCGATCGTC GTCAGCCAGG AAAACCTGGA AAAGCTGATG GACGACGCGC AGCGCGGCTC CAACGCTGTG GTGACCGTGG ATCTGGAAAC CCAGGAAATC ACCGGCCCGG ATGGTGGCAG CATCAGCTTC GAAATCGATG AATTCAAGCG CCATTGCATG TTGAACGGCC TCGATGACAT CGGCCTCACC ATGGAAAAAT CCAGCGCGAT TGCTTCGTTC GAGACGGCCA ACGCCGCATC GCGCCCCTGG GCCTGA
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Protein sequence | MEKFTKLTGV AAPLPVVNID TDMIIPKDYL KTIKRTGLGT GLFAEARYHQ DGSINQDFVL NKPAYQNAKI LVAGDNFGCG SSREHAPWAL LDFGIRCVIS TSFADIFYNN CFKNGILPIV VSQENLEKLM DDAQRGSNAV VTVDLETQEI TGPDGGSISF EIDEFKRHCM LNGLDDIGLT MEKSSAIASF ETANAASRPW A
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