Gene Vapar_1421 details

Gene Information

• Locus tag: Vapar_1421
• Symbol: leuD
• ID: 7971249
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: -
• Start bp: 1544611
• End bp: 1545261
• Gene Length: 651 bp
• Protein Length: 216 aa
• Translation table: 11
• GC content: 64%
• IMG OID: 644792019
• Product: isopropylmalate isomerase small subunit
• Protein accession: YP_002943338
• Protein GI: 239814428
• COG category: [E] Amino acid transport and metabolism
• COG ID: [COG0066] 3-isopropylmalate dehydratase small subunit
• TIGRFAM ID: [TIGR00171] 3-isopropylmalate dehydratase, small subunit

Plasmid Coverage information

• Num covering plasmid clones: 17
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCAGAAAT TCACCGTGCA CAAGGGCCTC GTGGCCCCGA TGGACCGCGA GAACGTCGAC 
ACCGACGCGA TCATTCCGAA GCAGTTCCTC AAGTCGATCA AGCGCACCGG CTTCGGCCAG 
AACCTGTTCG ACGAATGGCG CTACCTGGAC GCCGGCTTTC CGGGCCAGGA TCCGCAAAGC 
CGCAAGCCGA ACCCCGACTT CGTGCTGAAC CAGCCGCGCT ATGCCGGCGC CTCGATCCTC 
TTGGCGCGCA AGAATTTCGG CTGCGGCTCG TCGCGCGAGC ATGCGCCTTG GGCGCTCGAC 
CAGTACGGCT TCCGCGCGAT CATCGCGCCG AGCTATGCCG ACATCTTCTT CAACAACAGC 
TTCAAGAACG GCCTGCTGCC GATCGTGCTG CCCGAAGCGC AGGTGGCGCA GCTGTTCGAC 
GAGACCTTCG CCTTTCCCGG CTACACGCTC ACCATCGACC TGGAGCGCCA GGTGGTCGTG 
AAGCCCGATG GCGGCGAGTT CGCGTTCGAC GTGCAGGCCT TCCGCAAGTA CTGCCTGATC 
AACGGGCTGG ACGACATCGG CCTCACGCTG CGCCACAAGG ACAAGATCAA GGCCTTCGAG 
GCCGAGCGGC TGGCGCAGAA GCCCTGGCTC GCGCACACGA TGATCTCGTG A 

 

Protein sequence

MQKFTVHKGL VAPMDRENVD TDAIIPKQFL KSIKRTGFGQ NLFDEWRYLD AGFPGQDPQS 
RKPNPDFVLN QPRYAGASIL LARKNFGCGS SREHAPWALD QYGFRAIIAP SYADIFFNNS 
FKNGLLPIVL PEAQVAQLFD ETFAFPGYTL TIDLERQVVV KPDGGEFAFD VQAFRKYCLI 
NGLDDIGLTL RHKDKIKAFE AERLAQKPWL AHTMIS