More than 300 homologs were found in PanDaTox collection
for query gene Amir_2908 on replicon NC_013093
Organism: Actinosynnema mirum DSM 43827



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013093  Amir_2908  extracellular solute-binding protein family 5  100 
 
 
501 aa  959    Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_009953  Sare_2038  extracellular solute-binding protein  39.92 
 
 
557 aa  233  7.000000000000001e-60  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.000868803 
 
 
-
 
NC_009953  Sare_2171  extracellular solute-binding protein  36.33 
 
 
580 aa  230  4e-59  Salinispora arenicola CNS-205  Bacteria  normal  0.596914  normal  0.0132313 
 
 
-
 
NC_013510  Tcur_4973  extracellular solute-binding protein family 5  33.4 
 
 
557 aa  174  3.9999999999999995e-42  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_2067  extracellular solute-binding protein  30.79 
 
 
600 aa  137  5e-31  Frankia sp. EAN1pec  Bacteria  normal  0.153764  normal 
 
 
-
 
NC_007777  Francci3_1641  extracellular solute-binding protein  37.56 
 
 
588 aa  112  2.0000000000000002e-23  Frankia sp. CcI3  Bacteria  normal  0.0558371  normal 
 
 
-
 
NC_009953  Sare_2193  extracellular solute-binding protein  33.33 
 
 
507 aa  104  3e-21  Salinispora arenicola CNS-205  Bacteria  normal  0.0522887  normal  0.720743 
 
 
-
 
NC_013093  Amir_2457  extracellular solute-binding protein family 5  25.56 
 
 
562 aa  84.3  0.000000000000004  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_24240  ABC-type dipeptide transport system, periplasmic component  25 
 
 
573 aa  81.3  0.00000000000003  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_012912  Dd1591_2195  extracellular solute-binding protein family 5  23.68 
 
 
547 aa  81.3  0.00000000000004  Dickeya zeae Ech1591  Bacteria  normal  0.337162  n/a   
 
 
-
 
NC_013159  Svir_33430  ABC-type dipeptide transport system, periplasmic component  27.48 
 
 
562 aa  80.5  0.00000000000006  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.175667 
 
 
-
 
NC_013093  Amir_4719  4-phytase  24.38 
 
 
564 aa  80.1  0.00000000000009  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0883166  n/a   
 
 
-
 
NC_011094  SeSA_A1880  periplasmic oligopeptide-binding protein  24.55 
 
 
543 aa  77.4  0.0000000000006  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal  0.558162 
 
 
-
 
NC_011083  SeHA_C1937  periplasmic oligopeptide-binding protein  24.55 
 
 
543 aa  76.6  0.000000000001  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal  0.26638 
 
 
-
 
NC_011149  SeAg_B1399  periplasmic oligopeptide-binding protein  24.55 
 
 
543 aa  76.3  0.000000000001  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.530492  n/a   
 
 
-
 
NC_011080  SNSL254_A1874  periplasmic oligopeptide-binding protein  24.55 
 
 
543 aa  76.3  0.000000000001  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_011205  SeD_A1581  periplasmic oligopeptide-binding protein  24.33 
 
 
543 aa  76.3  0.000000000001  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.197291  normal 
 
 
-
 
NC_011725  BCB4264_A1234  oligopeptide-binding protein OppA  21.43 
 
 
551 aa  74.3  0.000000000005  Bacillus cereus B4264  Bacteria  normal  0.576068  n/a   
 
 
-
 
NC_012917  PC1_2372  extracellular solute-binding protein family 5  24.73 
 
 
543 aa  73.9  0.000000000006  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.220552  n/a   
 
 
-
 
NC_009656  PSPA7_5116  ABC transporter periplasmic binding protein  27.38 
 
 
531 aa  72.8  0.00000000001  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_1984  extracellular solute-binding protein family 5  24.94 
 
 
556 aa  72.8  0.00000000001  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B4108  oligopeptide-binding protein OppA  21.21 
 
 
551 aa  72  0.00000000002  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_013169  Ksed_12470  ABC-type dipeptide transport system, periplasmic component  24.73 
 
 
614 aa  71.6  0.00000000003  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.185176  normal  0.110435 
 
 
-
 
NC_008463  PA14_58420  putative binding protein component of ABC dipeptid  27.42 
 
 
533 aa  71.2  0.00000000004  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.851894  normal 
 
 
-
 
NC_011312  VSAL_I1946  oligopeptide transport system permease protein B  23.89 
 
 
554 aa  70.5  0.00000000006  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A2163  periplasmic oligopeptide-binding protein precursor  23.52 
 
 
525 aa  70.5  0.00000000006  Yersinia pestis Angola  Bacteria  normal  0.037967  normal  0.0426294 
 
 
-
 
NC_009436  Ent638_1483  extracellular solute-binding protein  26.42 
 
 
542 aa  70.9  0.00000000006  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_009708  YpsIP31758_1960  oligopeptide ABC transporter, periplasmic oligopeptide-binding protein  23.52 
 
 
545 aa  70.5  0.00000000007  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  0.390049  n/a   
 
 
-
 
NC_010465  YPK_2070  extracellular solute-binding protein  23.52 
 
 
545 aa  70.5  0.00000000007  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.174491  n/a   
 
 
-
 
NC_004311  BRA0537  oligopeptide ABC transporter, periplasmic oligopeptide-binding protein  22.9 
 
 
525 aa  70.1  0.00000000008  Brucella suis 1330  Bacteria  normal  0.75807  n/a   
 
 
-
 
NC_009524  PsycPRwf_0019  extracellular solute-binding protein  22.83 
 
 
533 aa  70.1  0.00000000009  Psychrobacter sp. PRwf-1  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_4561  dipeptide ABC transporter, periplasmic dipeptide-binding protein  23.85 
 
 
531 aa  69.7  0.0000000001  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_2654  extracellular solute-binding protein family 5  24.73 
 
 
544 aa  69.7  0.0000000001  Pectobacterium wasabiae WPP163  Bacteria  normal  0.411058  n/a   
 
 
-
 
NC_010184  BcerKBAB4_1089  extracellular solute-binding protein  20.78 
 
 
551 aa  69.3  0.0000000001  Bacillus weihenstephanensis KBAB4  Bacteria  hitchhiker  0.000272386  n/a   
 
 
-
 
NC_013421  Pecwa_2285  extracellular solute-binding protein family 5  24.45 
 
 
556 aa  68.9  0.0000000002  Pectobacterium wasabiae WPP163  Bacteria  normal  0.946227  n/a   
 
 
-
 
NC_011773  BCAH820_1267  oligopeptide ABC transporter, oligopeptide-binding protein  22.13 
 
 
548 aa  68.9  0.0000000002  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_005945  BAS1107  oligopeptide ABC transporter oligopeptide-binding protein  21.93 
 
 
534 aa  68.9  0.0000000002  Bacillus anthracis str. Sterne  Bacteria  normal  0.0126843  n/a   
 
 
-
 
NC_009668  Oant_3599  extracellular solute-binding protein  23.46 
 
 
525 aa  69.3  0.0000000002  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.1646  n/a   
 
 
-
 
NC_009504  BOV_A0467  oligopeptide ABC transporter, periplasmic oligopeptide-binding protein  22.9 
 
 
525 aa  69.3  0.0000000002  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_1197  oligopeptide ABC transporter oligopeptide-binding protein  21.93 
 
 
532 aa  68.9  0.0000000002  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.0197215  n/a   
 
 
-
 
NC_014165  Tbis_1850  extracellular solute-binding protein family 5  24.39 
 
 
584 aa  68.9  0.0000000002  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_4639  extracellular solute-binding protein family 5  28.57 
 
 
532 aa  68.9  0.0000000002  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_009457  VC0395_A0609  oligopeptide ABC transporter, periplasmic oligopeptide-binding protein  23.13 
 
 
543 aa  68.6  0.0000000003  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_014150  Bmur_2170  extracellular solute-binding protein family 5  21.15 
 
 
535 aa  67.8  0.0000000004  Brachyspira murdochii DSM 12563  Bacteria  normal  n/a   
 
 
-
 
NC_013172  Bfae_00730  ABC-type dipeptide transport system, periplasmic component  26.61 
 
 
560 aa  67.8  0.0000000005  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_1985  extracellular solute-binding protein family 5  23.75 
 
 
545 aa  67  0.0000000007  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_4238  extracellular solute-binding protein  23.51 
 
 
531 aa  67  0.0000000008  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.0301487  normal 
 
 
-
 
NC_009972  Haur_2247  extracellular solute-binding protein  25.11 
 
 
535 aa  67  0.0000000008  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.0125251  n/a   
 
 
-
 
NC_013525  Tter_0699  extracellular solute-binding protein family 5  26.44 
 
 
590 aa  66.2  0.000000001  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_010172  Mext_4272  extracellular solute-binding protein  29.05 
 
 
532 aa  65.5  0.000000002  Methylobacterium extorquens PA1  Bacteria  normal  0.0380913  normal  0.650765 
 
 
-
 
NC_013411  GYMC61_1612  extracellular solute-binding protein family 5  25.05 
 
 
549 aa  65.9  0.000000002  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_009485  BBta_2056  periplasmic dipeptide transport protein precursor  25.67 
 
 
532 aa  65.5  0.000000002  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.184376  normal  0.721299 
 
 
-
 
NC_004578  PSPTO_4559  dipeptide ABC transporter, periplasmic dipeptide-binding protein  24.6 
 
 
530 aa  64.7  0.000000003  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_1954  extracellular solute-binding protein family 5  22.32 
 
 
547 aa  64.7  0.000000004  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A2861  putative oligopeptide ABC transporter, oligopeptide-binding protein  22.94 
 
 
540 aa  63.9  0.000000006  Bacillus cereus B4264  Bacteria  normal  0.505439  n/a   
 
 
-
 
NC_009832  Spro_2701  extracellular solute-binding protein  23.41 
 
 
545 aa  63.9  0.000000006  Serratia proteamaculans 568  Bacteria  normal  0.301975  hitchhiker  0.00251286 
 
 
-
 
NC_014210  Ndas_1553  extracellular solute-binding protein family 5  23.54 
 
 
587 aa  63.9  0.000000007  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.525667  normal  0.106292 
 
 
-
 
NC_012850  Rleg_3103  extracellular solute-binding protein family 5  23.8 
 
 
526 aa  63.9  0.000000007  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.529212  normal  0.177978 
 
 
-
 
NC_010184  BcerKBAB4_2650  4-phytase  22.51 
 
 
540 aa  62.8  0.00000001  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.452984  n/a   
 
 
-
 
NC_008463  PA14_58360  putative binding protein component of ABC transpor  26.6 
 
 
532 aa  63.2  0.00000001  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_011369  Rleg2_2834  extracellular solute-binding protein family 5  23.59 
 
 
526 aa  63.2  0.00000001  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.360597 
 
 
-
 
NC_010184  BcerKBAB4_0179  4-phytase  23.9 
 
 
546 aa  63.2  0.00000001  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_0845  extracellular solute-binding protein  23.46 
 
 
532 aa  62.8  0.00000001  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_010320  Teth514_0546  4-phytase  24.89 
 
 
552 aa  62.4  0.00000002  Thermoanaerobacter sp. X514  Bacteria  normal  0.633185  n/a   
 
 
-
 
NC_013456  VEA_002959  oligopeptide ABC transporter periplasmic oligopeptide-binding protein OppA  22.96 
 
 
558 aa  62  0.00000002  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_010320  Teth514_0623  4-phytase  24.89 
 
 
552 aa  62.4  0.00000002  Thermoanaerobacter sp. X514  Bacteria  decreased coverage  0.000146122  n/a   
 
 
-
 
NC_012880  Dd703_1735  extracellular solute-binding protein family 5  24.41 
 
 
538 aa  62  0.00000002  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_010658  SbBS512_E1412  oligopeptide ABC transporter, periplasmic oligopeptide-binding protein  22.27 
 
 
543 aa  62.4  0.00000002  Shigella boydii CDC 3083-94  Bacteria  normal  0.706367  n/a   
 
 
-
 
NC_007492  Pfl01_0813  extracellular solute-binding protein  24.05 
 
 
531 aa  62  0.00000002  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.125368  normal  0.209584 
 
 
-
 
NC_009668  Oant_3598  extracellular solute-binding protein  22.73 
 
 
525 aa  62  0.00000002  Ochrobactrum anthropi ATCC 49188  Bacteria  decreased coverage  0.000427863  n/a   
 
 
-
 
NC_013456  VEA_003816  peptide transport periplasmic protein SapA  25.35 
 
 
539 aa  62  0.00000002  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_0044  extracellular solute-binding protein family 5  21.92 
 
 
538 aa  62.4  0.00000002  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_1352  extracellular solute-binding protein family 5  23.6 
 
 
534 aa  61.6  0.00000003  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013131  Caci_4557  extracellular solute-binding protein family 5  24.42 
 
 
570 aa  61.6  0.00000003  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013517  Sterm_3852  extracellular solute-binding protein family 5  21.24 
 
 
536 aa  61.2  0.00000004  Sebaldella termitidis ATCC 33386  Bacteria  decreased coverage  0.00000990708  n/a   
 
 
-
 
NC_009674  Bcer98_1935  4-phytase  20.89 
 
 
540 aa  61.2  0.00000004  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.0804011  n/a   
 
 
-
 
NC_005945  BAS0195  oligopeptide ABC transporter oligopeptide-binding protein  23.69 
 
 
546 aa  60.8  0.00000006  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_0214  putative oligopeptide ABC transporter, oligopeptide-binding protein  23.69 
 
 
546 aa  60.8  0.00000006  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_005957  BT9727_0182  solute-binding family 5 protein  24.05 
 
 
546 aa  60.8  0.00000006  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B2433  putative oligopeptide ABC transporter, oligopeptide-binding protein  23.16 
 
 
540 aa  60.8  0.00000006  Bacillus cereus G9842  Bacteria  normal  0.967916  normal  0.652504 
 
 
-
 
NC_007530  GBAA_0194  oligopeptide ABC transporter oligopeptide-binding protein  23.69 
 
 
546 aa  60.8  0.00000006  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_013721  HMPREF0424_0438  extracellular solute-binding protein  21.14 
 
 
569 aa  60.5  0.00000007  Gardnerella vaginalis 409-05  Bacteria  n/a    hitchhiker  0.00000302418 
 
 
-
 
NC_007333  Tfu_1821  putative peptide transport system substrate-binding protein  22.73 
 
 
587 aa  60.5  0.00000007  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_1905  putative oligopeptide ABC transporter, oligopeptide-binding protein  22.2 
 
 
542 aa  60.5  0.00000007  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_006274  BCZK0185  solute-binding family 5 protein  23.69 
 
 
546 aa  60.5  0.00000008  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_009524  PsycPRwf_0021  extracellular solute-binding protein  23.7 
 
 
561 aa  60.1  0.00000009  Psychrobacter sp. PRwf-1  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_4787  extracellular solute-binding protein family 5  28.36 
 
 
532 aa  60.1  0.00000009  Methylobacterium populi BJ001  Bacteria  normal  normal  0.690041 
 
 
-
 
NC_009436  Ent638_2302  extracellular solute-binding protein  21.43 
 
 
544 aa  60.1  0.00000009  Enterobacter sp. 638  Bacteria  decreased coverage  0.00365913  normal 
 
 
-
 
NC_011830  Dhaf_3016  extracellular solute-binding protein family 5  25.16 
 
 
545 aa  59.3  0.0000001  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.0244604  n/a   
 
 
-
 
NC_009524  PsycPRwf_0020  extracellular solute-binding protein  22.9 
 
 
558 aa  59.7  0.0000001  Psychrobacter sp. PRwf-1  Bacteria  normal  normal 
 
 
-
 
NC_011725  BCB4264_A0219  putative oligopeptide ABC transporter, oligopeptide-binding protein  23.85 
 
 
546 aa  60.1  0.0000001  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B5107  putative oligopeptide ABC transporter, oligopeptide-binding protein  23.69 
 
 
546 aa  59.7  0.0000001  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_010498  EcSMS35_1897  oligopeptide ABC transporter, periplasmic oligopeptide-binding protein  22.27 
 
 
558 aa  59.3  0.0000001  Escherichia coli SMS-3-5  Bacteria  normal  0.340522  normal  0.197408 
 
 
-
 
NC_011769  DvMF_1829  extracellular solute-binding protein family 5  32.08 
 
 
520 aa  59.7  0.0000001  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_009832  Spro_2702  extracellular solute-binding protein  23.52 
 
 
545 aa  59.3  0.0000001  Serratia proteamaculans 568  Bacteria  normal  0.108728  hitchhiker  0.000845971 
 
 
-
 
NC_009654  Mmwyl1_4404  extracellular solute-binding protein  21.44 
 
 
536 aa  58.5  0.0000002  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_010184  BcerKBAB4_3270  extracellular solute-binding protein  22.32 
 
 
567 aa  59.3  0.0000002  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.0963189  n/a   
 
 
-
 
NC_009783  VIBHAR_01870  hypothetical protein  25.25 
 
 
539 aa  59.3  0.0000002  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_003909  BCE_0214  oligopeptide ABC transporter, oligopeptide-binding protein, putative  23.09 
 
 
546 aa  58.5  0.0000003  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_013757  Gobs_2049  extracellular solute-binding protein family 5  28.14 
 
 
595 aa  58.2  0.0000003  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.352532  n/a   
 
 
-
 
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