| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dd1591_2195 |
|---|
| Symbol | |
|---|
| ID | 8119192 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dickeya zeae Ech1591 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012912 |
|---|
| Strand | - |
|---|
| Start bp | 2519987 |
|---|
| End bp | 2521630 |
|---|
| Gene Length | 1644 bp |
|---|
| Protein Length | 547 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 644852579 |
|---|
| Product | extracellular solute-binding protein family 5 |
|---|
| Protein accession | YP_003004517 |
|---|
| Protein GI | 251789796 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG4166] ABC-type oligopeptide transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.337162 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTAAACA ACACTATTAA AAAAACACTG GCGGTCAGCA TTCTCGCTGC TATTACTGCC
TCTGCCGGCG TTTCCGCCTG GGCCGCTACG GTGCCGGCCG GCGTCCAACT GGCTGAGAAG
CAGGAACTGG TACGTAACAA CGGTTCCGAA GTCGCCTCGT TGGACCCGCA TAAAATTGAG
GGCGTGCCGG AATCGAATAT CGCGCGTGAC CTGCTGGAAG GGCTGTTGGT TACCTCTCCG
GACGGCCATC CGGCTCCGGG TGTGGCAGAA AGCTGGGACA ACAAAGAGTT TAAAGTCTGG
ACCTTCCATC TGCGTAAAGA CGCCAAATGG TCCAACGGCG ATCCGGTTAC CGCTCAGGAT
TTCGTTTACA GCTGGCAGCG TATTTCTGAT CCGAAAACCG CTTCTCCTTA CGCCAGTTAC
CTGCAGTTTG GCCATATCGT GAATATCGAT GACGTTGTGG CAGGCAAAAA ATCTCCTGAT
GCGCTGGGCG TGAAAGCAAT CGACGATCAC ACGTTTGAAG TGACGCTGAG CGAACCGGTT
CCGTATTTCT ATAAACTGCT GGTTCACCCG TCAACTTTCC CGGTGAATAA GAAAGTGGTC
GAAAAGTTCG GCGACAAATG GACCCAACCG GCCAACTGGG TCGGCAATGG TGCTTATAAG
CTGAACGAAT GGATCGTGAA CGAAAAAATC GTTCTGGAGC GCAACCCGAA TTACTGGGAT
AACGCCCACA CCATCATTAA TAAAGTGACT TATCTGCCGA TCTCCTCCGA AGTGACGGAT
GTTAACCGCT ACCGCAGCGG CGAGATCGAC ATGACCTATA ACAACCTGCC GATCGAACTG
TTCCAGAAGT TGAAGAAAGA GATCCCCAAC GAAGTGAAGG CGGATCCGTA TCTGTGCACC
TACTACTATG AGATCAACAA CCAGAAAGCG CCGTTTACCG ATCCGCGCGT GCGTCAGGCG
CTGGTGTTGG GCCTGGATCA GGACATTCTG GTCAACAAGG TGAAAGGTCA GGGCGATACC
CCGGCGTTTG GTTTCACTCC GCCGTACATC GATGGTCTGG ATGGCAAACT GACGCCGCCG
GAGTGGGTGG GCTGGTCGCG TGAAAAACGT AACGCCGAGG CGAAGAAACT GCTGGCCGAA
GCCGGCTTCA CGGCTGAAAA ACCGCTGACG TTCAACCTGC TGTATAACAC GTCCGATCTG
CACAAAAAAC TGGCTATTGC CGCCTCTTCT ATCTGGAAGA ACAACATTGG CGTCGAAGCT
AAACTGGAAA ACCAGGAGTG GAAAACCTTC CTGGATAGCC GTCATCAGGG CACATTCGAT
GTCGCTCGTG CCGGCTGGTG CGCGGACTAT AACGAACCGA CCACGTTCCT GAATATCATG
ATCGCCAACA GCAGCAGCAA CACTTCGCAT TACAAGAGCG CAGATTTCGA CAAGTTGATG
GCGAACGCGC TGGCCGCCAA GACCGAAGAA GAACGTGCTA ACGTCTACAG ACAGGCTGAA
ACGTTGCTGG AAAAAGACGC CGTCGTGGTT CCGGTGTACT ATTATGCCAA CACCCGTCTG
GTTAAACCGT ATGTGGGCGG CCTGACAGGT AAAGATCCGC TGGATAACCT GAACGTTAAA
AACCTTTATA TTATCAAGCA TTAA
|
|---|
| Protein sequence | MVNNTIKKTL AVSILAAITA SAGVSAWAAT VPAGVQLAEK QELVRNNGSE VASLDPHKIE
GVPESNIARD LLEGLLVTSP DGHPAPGVAE SWDNKEFKVW TFHLRKDAKW SNGDPVTAQD
FVYSWQRISD PKTASPYASY LQFGHIVNID DVVAGKKSPD ALGVKAIDDH TFEVTLSEPV
PYFYKLLVHP STFPVNKKVV EKFGDKWTQP ANWVGNGAYK LNEWIVNEKI VLERNPNYWD
NAHTIINKVT YLPISSEVTD VNRYRSGEID MTYNNLPIEL FQKLKKEIPN EVKADPYLCT
YYYEINNQKA PFTDPRVRQA LVLGLDQDIL VNKVKGQGDT PAFGFTPPYI DGLDGKLTPP
EWVGWSREKR NAEAKKLLAE AGFTAEKPLT FNLLYNTSDL HKKLAIAASS IWKNNIGVEA
KLENQEWKTF LDSRHQGTFD VARAGWCADY NEPTTFLNIM IANSSSNTSH YKSADFDKLM
ANALAAKTEE ERANVYRQAE TLLEKDAVVV PVYYYANTRL VKPYVGGLTG KDPLDNLNVK
NLYIIKH
|
|---|
| |