| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_2372 |
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| Symbol | |
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| ID | 8133316 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | - |
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| Start bp | 2727699 |
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| End bp | 2729330 |
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| Gene Length | 1632 bp |
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| Protein Length | 543 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 644865652 |
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| Product | extracellular solute-binding protein family 5 |
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| Protein accession | YP_003017939 |
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| Protein GI | 253688749 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG4166] ABC-type oligopeptide transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.220552 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATGAGT TGATCAAAAA ACGTTTCAAA TACTCGCTGC TGTTTCTCAC GCTGTGTACA
GCGGGGGCGA CATCGGCTTT TGCAGCTCAG GTTCCTGCCG GTGCGGTGCT GGCGGATAAG
CAAGAGTTAG TGCGCGGCAA TGGTTCTGAG CCTGCCTCGT TGGATCCGCA CAAGGTGGAA
AGCGATGTAG AAGGCCACAT TATCAATGAT TTCTTCGATA ATCTGGTGCG TGTCGGTGAT
GATGGTGTTA TCCAGCCGCG ACTGGCTGAG CGCTGGGATA ATAAAGACAA CACGGTGTGG
ACGTTCCACC TGCGGCCTGA TGCCAAATGG TCCGATGGTT CACCGATTAC CGCTGACGAT
GTGGTTTACA GTTGGCGACG CCTTGGCGAT CCGAAAACGC TGTCACCTTA CGGCAGCTAC
GTCGCTAGCA TGTATGTGAA GAATGCGGCG GATATTATGG CGGGTAAGAA AGCGCCAGAC
ACCTTGGGTA TCAAGGCACT GGATAGTCAT ACCGTTGAAG TTACACTGGA GCATCCACTT
TCGTATTTTC TGGAAATGTC GGCTTACCAT GTACTGGTGC CATTACCGAA AGCGGTGATT
GAAAAGCATC CAGAAAACTG GACGCAGGTC GGTAATTTTG TCAGCAGCGG TCCCTACACG
CTGAGCGAGT GGGTGGTTAA CGAACGTATT GTCGGTAAGC GCAATAGCCA GTATTGGGAT
AACGCGCATA CGGTGATTAA CAAAGTGACG TACCTGCCGA TTAGCTCGCA AGCGGCGGAA
TTAAACCGTT ATAAATCGGG CGAAATTGAC ATTACGGGGC TTTTATCACC GATTCAGTTT
GCATCACTGA AAAAAGAATA CCCGCAGGAA GTGAAGGTGG CACCGCAGAT CGGTACCTAC
TTCTATCGCT TCAATACGAA AAAGGCTCCT TTTGACGATC CTCGTGTCCG TCGCGCTCTG
GACCTCAGCT TAGATAAAGA CATCATCGCA AATAATGTAT TGGGGATGGG ACAGACGCCT
GCTTACAGTT TGATTCCTAA AAATATCGGG GGCTTCCAGC GTAAGGATCC TCAATGGGCA
AGTTGGACAC AGCAACAGCG CAATGACGAA GCGAAAAAAC TGTTGAAAGA GGCCGGATTT
GATGAAAAAC ATCCGCTGAA ATTCAACCTG CTTTACAACA CCTCTGAATC ACATTTACGT
GTGGCGATCG CCGCGAGTTC AATGTGGAAG AAAAATCTTG GTTCAGAAGT GACGCTGCAA
AATCAGGAAT GGAAAACCAT GCTGGATACC GTACGTACTG GGGATTTTGA AGTGGTCAGA
CAATCCTGGA CAGGGGATTA CAATGAAGCC AGTACATTCC TGAATACGTT GGAAACCAAT
GACAGTAACA ACAACGGTAA ATTCAGTAAT GCCCAGTATG ATGCGTTGCT GAAAAAGGCG
CTGACGGTCA AGGATAAGCA GGAGAAAGAG GCTATTTATC AACAGGCTTC GGATATTTTA
GATAACACTA TTCCATTGTT GCCAATCTAC TATTATGTTC AGCCACAGAT GGTTAAGACG
TATGTTGGTG GTTTTTCGCC GAATGTGCGT GGCGATTATT ACACGCAAGA TATGTACATC
CTTAAGCACT AA
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| Protein sequence | MNELIKKRFK YSLLFLTLCT AGATSAFAAQ VPAGAVLADK QELVRGNGSE PASLDPHKVE
SDVEGHIIND FFDNLVRVGD DGVIQPRLAE RWDNKDNTVW TFHLRPDAKW SDGSPITADD
VVYSWRRLGD PKTLSPYGSY VASMYVKNAA DIMAGKKAPD TLGIKALDSH TVEVTLEHPL
SYFLEMSAYH VLVPLPKAVI EKHPENWTQV GNFVSSGPYT LSEWVVNERI VGKRNSQYWD
NAHTVINKVT YLPISSQAAE LNRYKSGEID ITGLLSPIQF ASLKKEYPQE VKVAPQIGTY
FYRFNTKKAP FDDPRVRRAL DLSLDKDIIA NNVLGMGQTP AYSLIPKNIG GFQRKDPQWA
SWTQQQRNDE AKKLLKEAGF DEKHPLKFNL LYNTSESHLR VAIAASSMWK KNLGSEVTLQ
NQEWKTMLDT VRTGDFEVVR QSWTGDYNEA STFLNTLETN DSNNNGKFSN AQYDALLKKA
LTVKDKQEKE AIYQQASDIL DNTIPLLPIY YYVQPQMVKT YVGGFSPNVR GDYYTQDMYI
LKH
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