| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A0609 |
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| Symbol | oppA |
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| ID | 5136328 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | + |
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| Start bp | 649416 |
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| End bp | 651047 |
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| Gene Length | 1632 bp |
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| Protein Length | 543 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640532067 |
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| Product | oligopeptide ABC transporter, periplasmic oligopeptide-binding protein |
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| Protein accession | YP_001216559 |
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| Protein GI | 147673391 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG4166] ABC-type oligopeptide transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 46 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTATAAGA ACAAAATCAC CCAGGCACTG CTGTTAGGTG CTGGTTTAGC GGTGGCTACC
ACGTCATTCA CCTCTTTTGC AGCGAATGTT CCTGCTGGTA CCAAACTTGC TCCTGTTCAA
GAGCTGGTTC GTGGTAACGG TACTGAAGTC GCGTCTCTTG ATCCGCACAA AACGGAAGGT
GTTCCTGAGT CCAACGTGAT TCGTGATCTG TTAGAAGGTC TGGTAAACCA AGACGCTAAC
GGTAACGTGG TTCCGGGTGT CGCTGAAAGC TGGGAAACGA CAGACAACAA AACCTTTACT
TTCCATATTC GTAAAGATGC GAAATGGTCT AACGGTGACC CTGTTACTGC ACACGATTTC
GTCTACAGCT TCCAACGTGC TGTCGATCCT GCAACCGCTT CTCCTTACTC TTGGTATATG
GAATACACCA AGATGAAGAA TGCGAAAGAA ATCATTGCCG GAGAGAAAGA CAAATCAACA
CTGGGCGCGA AAGCAGTTGA TGATCATACT CTGGTTTTTG AGTTGGAGAC TGCCGTTCCT
TACTTCGTGA TGATGATGGG TCACACAACG GTGAAACCGA TTCACAAAGC GACAGTAGAA
AAATTTGGTG ATCAGTGGAC CAAACCTGAA AACTTTGTCG GTAACGGTGC TTACGTTCTC
GACAAGTGGG TGGTTAACGA GCGTTTAGAG CTCAAGCGTA ACCCTCAATA CTGGGACGAC
AAAAATACTG TTCTGAATAA AGTGACTTAT CTGCCAATCG AAAACCAAGT GGCAGAGATG
AACCGTTTCC TATCGGGCGA AATTCAGATC ACGAACGAAC TGCCACTTGA GCACTTCAAA
CGTCTGAAAA AAGAGCATCC AGAATCTGTT CAAGTGCAAG GCCAACTCTG TACTTATTAC
TACGGCTTCA ATAACAAAAA GCCACCATTT GACGATGTTC GCGTACGTAA AGCCCTTTCT
TACGCGATTG ACCGTGATGT GGTTTCTGAT GCGATTCTAG GCCAAGGCCA AAAACCGGCT
TACTTCCTGA CTCCGGAAAT CACCGCAGGA TTTAGCCCAG AAATGCCAGC TTACGGCAAA
ATGACTCAGA AAGAGCGTAT TGCAGAAGCG AAGAAATTGC TGGAAGAAGC GGGTTACAAC
AAATCTAACC CTCTGAAATT CACTCTGCTG TACAACACCT CAGAAAACCA CAAGAAGATT
GCAACTGCGA TCCAATCTAT GTGGAAAACT TCTCTGGGCG TTGATATCGC ACTGGAAAAC
CAAGAGTGGA AAACCTACCT AGATACTCGT CGTCAAGGCA ACTTTGATGT GACTCGTGCG
GGATGGTGTG GTGACTACAA CGAAGCGTCT TCTTTCTTGA CTCTGATGTT GTCGAGCAAC
ACTTCAAACG ATCCGCAGTA CCACAGTGCT GAATACGACG CCGTGATTGA AAAAGCGAAA
ACGTCAACTT CTGAAGAAGA GCGTCAAAAA CTCTATGCGG ATGCAGAGAA GTTGTTGGCT
CGTGATATGC CAATCGCGCC AATCTACCAA TACGTAAGAT CGCGTCTTGT TTCTCCAACC
GTCGGTGGCT ACCCATCGAA TAACGCGGAA GACAAGATCT ACGCCAAAGA TCTTTACATC
AAAGCTCAAT AA
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| Protein sequence | MYKNKITQAL LLGAGLAVAT TSFTSFAANV PAGTKLAPVQ ELVRGNGTEV ASLDPHKTEG
VPESNVIRDL LEGLVNQDAN GNVVPGVAES WETTDNKTFT FHIRKDAKWS NGDPVTAHDF
VYSFQRAVDP ATASPYSWYM EYTKMKNAKE IIAGEKDKST LGAKAVDDHT LVFELETAVP
YFVMMMGHTT VKPIHKATVE KFGDQWTKPE NFVGNGAYVL DKWVVNERLE LKRNPQYWDD
KNTVLNKVTY LPIENQVAEM NRFLSGEIQI TNELPLEHFK RLKKEHPESV QVQGQLCTYY
YGFNNKKPPF DDVRVRKALS YAIDRDVVSD AILGQGQKPA YFLTPEITAG FSPEMPAYGK
MTQKERIAEA KKLLEEAGYN KSNPLKFTLL YNTSENHKKI ATAIQSMWKT SLGVDIALEN
QEWKTYLDTR RQGNFDVTRA GWCGDYNEAS SFLTLMLSSN TSNDPQYHSA EYDAVIEKAK
TSTSEEERQK LYADAEKLLA RDMPIAPIYQ YVRSRLVSPT VGGYPSNNAE DKIYAKDLYI
KAQ
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