| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PsycPRwf_0021 |
|---|
| Symbol | |
|---|
| ID | 5204494 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychrobacter sp. PRwf-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009524 |
|---|
| Strand | + |
|---|
| Start bp | 31051 |
|---|
| End bp | 32736 |
|---|
| Gene Length | 1686 bp |
|---|
| Protein Length | 561 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640598229 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_001278931 |
|---|
| Protein GI | 148651838 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG4166] ABC-type oligopeptide transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 37 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGATTT TAAGTCGTAC AACATTACCG ACACGCTTGC CACTGGTGAT GGCTGTCCTA
GCTGGCCTAT CACTGAGTGC GTGTGGTGAC AAAAACCCAC AAGAGAGCGG TAGCACAGCC
AAGACCTCTG AGCAGATTGA GCAGACAGCC TTGGCCGATA CGCAGCACAT CGTCATTAAT
AACACTGCCG AACCTGAGTC GATAGACCCG CACAAAGTCT CAGCGGTGCC AGAAGGCAAC
ATCATCCGTC AGATGTTCAC TGGGTTGGTC GATACAGACC GAGAAGGCAA AACTGTGCCT
GGTATGGCTG AAAGCTGGGA GAGTAGTGAC AATAAGGTCT GGACCTTTAA GCTGCGTGAT
GCCAAGTGGA GTAATGGCGA TCCGGTAACC GCTGGCGACT TCGTTTACAG TTGGCAGCGT
CTCATTGACC CAAATACCGC TGCACCTTAT GCCAGCTACT TGGTCGATGC CAAAGTGGCG
GGCGCTGAAG CCATCATGGA GGGCAAAGCT GCAGTAGATA CCTTGGGCAT TAAAGCGCTT
GATGACAAGA CGCTACAAGT TACCTTAACC GAAGCTGTGC CTTACTTTCC TGACATGCTT
ATTCACACCT CTACCAAGCC GGTGCCTCAA AAGGTCATTG CTGAGTTTGG GGAGAAGTGG
ACGGCACCTG AGCACATCGT GGTGAATGGC CCTTATACGT TAAGTGAGTG GTCAGTGAAT
GACAAAATTG TGCTGACCCG CAATACCCAT TACTTTGATA ATGCGAACAC CAAAATTGAT
CAAGTCACCA TTTTACCGCT GTCATCGCCC ACAACAGATG TGGCACGTTA CCGAGCAGGC
GAGGTGGATG TCAGTGCTGA AGTACCGCCT GAGCAGTTTG ATATGCTCAA AAAAGAGCTG
GGCGATGAGC TCAGAGTAGC ACCTAGATTG TGTACTTATT ACTACAAATA CAACACCGTC
AAGCCCCCAT TTAATGATGC GCGCGTACGC CGAGCTTTGG CCTTGGCTTT AGATCGTGAC
ACCATTGCCA CTAAGATTAT GGGGCAAGGT CAAGCGCCTG CTTATCAGTT GACGCCGCCG
ATTACCAATG GCATGGAGAA CTTCACTCCG CAGTGGGAGA GCTGGAGCAA ACAGCAGCGC
ATTGATGAGG CAAAAAAACT ATTAAACGAG GCAGGCTACA ATGCCAGCCA TCCACTGAAG
TTTGAGCTGT TGTATAACAC CAGTGACAAC CATAAAAAAA TTGCCGTGGC CTTTAGCGCT
TTGATGAAGC AAGCGCTAGG GGAGGACACA GTGGATGTTA CCTTGGTCAA TCAAGAGTGG
AAAACCTACT TAGATACCCG CCGATTGGGC AACTATGACA TTGCCCGCTC AAGCTGGTGT
GGGGACTATA ATGAACCATC CTCGTTTTTA AACACACTTA AGACTGACAA CACCAATAAC
CACGGTAAAT ACTCCAGTGC TAAGTTTGAC AGCATTATGA ATCAAACCTT GGTTGAAGGC
GTCGATGCGA CGCTGCGTGC CAAGCTATAT CAACAGGCTG AAGCACAGTT AGATGCGGAT
ATGCCCAATC TAAACATGTT CCATTATGTT GGGGTACGTC TGGTTAAACC TTATGTGGTG
GGCTTCCCAG AAAACGATCC ACTAGATGTG TGGCAAGCCA AAGACTTGGC CATTGCTAAG
CATTAA
|
|---|
| Protein sequence | MKILSRTTLP TRLPLVMAVL AGLSLSACGD KNPQESGSTA KTSEQIEQTA LADTQHIVIN
NTAEPESIDP HKVSAVPEGN IIRQMFTGLV DTDREGKTVP GMAESWESSD NKVWTFKLRD
AKWSNGDPVT AGDFVYSWQR LIDPNTAAPY ASYLVDAKVA GAEAIMEGKA AVDTLGIKAL
DDKTLQVTLT EAVPYFPDML IHTSTKPVPQ KVIAEFGEKW TAPEHIVVNG PYTLSEWSVN
DKIVLTRNTH YFDNANTKID QVTILPLSSP TTDVARYRAG EVDVSAEVPP EQFDMLKKEL
GDELRVAPRL CTYYYKYNTV KPPFNDARVR RALALALDRD TIATKIMGQG QAPAYQLTPP
ITNGMENFTP QWESWSKQQR IDEAKKLLNE AGYNASHPLK FELLYNTSDN HKKIAVAFSA
LMKQALGEDT VDVTLVNQEW KTYLDTRRLG NYDIARSSWC GDYNEPSSFL NTLKTDNTNN
HGKYSSAKFD SIMNQTLVEG VDATLRAKLY QQAEAQLDAD MPNLNMFHYV GVRLVKPYVV
GFPENDPLDV WQAKDLAIAK H
|
|---|
| |