| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0438 |
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| Symbol | |
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| ID | 8709095 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 479652 |
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| End bp | 481361 |
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| Gene Length | 1710 bp |
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| Protein Length | 569 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 646482553 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_003373683 |
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| Protein GI | 283782929 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.00000302418 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTTCATTT TCAAAAATAA TACGGCTTCA AAGAAAATTC TTGCTTCAAC AGCAGCTTTT
TCACTACTTA CAATTTCACT ACTTTCGCTT TCAGCTTGCA CAAATTACAA CTCTGGGAAA
ACCAGTATTA CGAACACTTC CGTGCTAAAT TCTAATCCTA AAAAAGGCGG AACTTTTACA
ATATTTACGT CAAATACGAA TATGAATTTC GATCCAGCGC GCAGTCAGGG TTTGCCAATT
ACGTCAAATA ATTTCATCTT CCGCGCGCTT ACTACTTGGA AAGTAAATCC GGATTTAAGC
AAGCAAACGC GTGTAGTTCC AGATTTGGCA ACGGATACTG GCACAACAAG TGACGGCGGA
AAAACTTGGA AATACACTCT TAAAAAAGGT GTTAAGTATG AAGATGGAAC CGAAATCACT
TCGCACGATA TTAAATTTGG TATTGAGCGC TCGTTTGCAG ATTCGTTAAG CGGTGGTTTT
GGATATCACA AAACTCTTCT TGTTGGAGCT GAAAACTATA GAGGACCATT CGACAGAAAG
TCGCTTGATT CGATTGAAAC TCCAGATAAT CAAACGATTA TTTTCCATTT GAAAGCACCT
TTTGCAGATT GGCCGTGGGT GACATCTTTG GCTGCATTTG TGCCAGTTCC AACTAGTTCA
GGCGATGCTC AGACATATAG TAAAAGGCCG AAATCTTCAG GACCATACAG GATTGTGCAG
AACGAAGTCG GAAAGCAAGT TGTAATGCAA CGCAATAAGT ATTGGGATTC CAAGCTCGAC
AGTACTCGCA CAGCTTCTGC AGATGAAATT GTGTGGAAAC TTGGTTCAGA TACTACTGTT
TCAGCTCAGT CTATGATTCA AGGAAATACG GATACAAAAA CCGCATTTTT GGCTGATTTT
GTGCCGCCTG CTCAGCTTGC ACAAGCTCAA GCGCATCCTC AATCTCGCAA GTTGCTAACT
ACTAGTAGTG ATGGTGCTCT TGAATATTTG GCTATTAATA CGCGCAGAAT AACGGATATC
AATGTTCGAA AAGCGATTCA GTATGCTGTT GATAAGCAGT CGTATCGAAC TGCGAAGGGT
GGCGAAATTG CTGGAGGTTT TGCTACTACG CTTATTACGC CTGGTATTTC TGGTCGAAAG
CAGTTTAATT TGTATTCTGA AGATCCTCGA GGGAACGTTG AGAAAGCTAA ACAACTGTTG
AAAAAATCAG GTAAAACCGA TATTAAGTTG ATTCTGATTG CTCGTCCGGA TCAAACGCAA
GTGGCATCTT CTGTGCAATC AAGTTTAAAG CGAGCTGGTA TTAAAGTGAC GATTAAAACT
GTTGACGCAG TAAACTTTAC GGATGCAATT ACGTCAAATT CCGGAGATTA CGATTTGGCT
TTGGCTTCGT GGCAGCCTGA TTTTCCTTCT GCTTTTGCGA ATTTGGGACC GCTTTTTGAT
TCTTCGCAAA TTGGCGGCGG TAACTGGAAT ATTTCTCGTT ATTCGAATCC TAAAGTAGAT
GCTTTAATTC GCGAAGCTGT GCAAACTGTT GACGAGAATT CGGCTCATAA ACTGTGGCAA
AAGGCGGATC ACGCTATTAT GGAAGATTCT CCTGTTGTTC CGCTTATTTA CTCGCATAAT
ACGTTTATTC ATGGAAGCGG TGTTGAGAAT TTCTACATCG GAAGTTTTCC TGCTTACCCT
AATTATGCGG CTGTGTCTTT GAATAGGTGA
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| Protein sequence | MFIFKNNTAS KKILASTAAF SLLTISLLSL SACTNYNSGK TSITNTSVLN SNPKKGGTFT
IFTSNTNMNF DPARSQGLPI TSNNFIFRAL TTWKVNPDLS KQTRVVPDLA TDTGTTSDGG
KTWKYTLKKG VKYEDGTEIT SHDIKFGIER SFADSLSGGF GYHKTLLVGA ENYRGPFDRK
SLDSIETPDN QTIIFHLKAP FADWPWVTSL AAFVPVPTSS GDAQTYSKRP KSSGPYRIVQ
NEVGKQVVMQ RNKYWDSKLD STRTASADEI VWKLGSDTTV SAQSMIQGNT DTKTAFLADF
VPPAQLAQAQ AHPQSRKLLT TSSDGALEYL AINTRRITDI NVRKAIQYAV DKQSYRTAKG
GEIAGGFATT LITPGISGRK QFNLYSEDPR GNVEKAKQLL KKSGKTDIKL ILIARPDQTQ
VASSVQSSLK RAGIKVTIKT VDAVNFTDAI TSNSGDYDLA LASWQPDFPS AFANLGPLFD
SSQIGGGNWN ISRYSNPKVD ALIREAVQTV DENSAHKLWQ KADHAIMEDS PVVPLIYSHN
TFIHGSGVEN FYIGSFPAYP NYAAVSLNR
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