More than 300 homologs were found in PanDaTox collection
for query gene Vapar_6121 on replicon NC_012792
Organism: Variovorax paradoxus S110



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_012792  Vapar_6121  two component transcriptional regulator, LuxR family  100 
 
 		 212 aa  421  1e-117  Variovorax paradoxus S110  Bacteria  normal  0.808445  n/a   
 
 
-
 
NC_012791  Vapar_4377  two component transcriptional regulator, LuxR family  66.82 
 
 		 237 aa  257  7e-68  Variovorax paradoxus S110  Bacteria  normal  0.237342  n/a   
 
 
-
 
NC_010524  Lcho_4097  two component LuxR family transcriptional regulator  36.7 
 
 		 239 aa  106  3e-22  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.00000000208001 
 
 
-
 
NC_009511  Swit_0694  two component LuxR family transcriptional regulator  35.24 
 
 		 252 aa  102  3e-21  Sphingomonas wittichii RW1  Bacteria  normal  0.770061  normal  0.351457 
 
 
-
 
NC_011894  Mnod_1543  two component transcriptional regulator, LuxR family  37.09 
 
 		 221 aa  99.4  4e-20  Methylobacterium nodulans ORS 2060  Bacteria  normal  1  n/a   
 
 
-
 
NC_008781  Pnap_0105  two component LuxR family transcriptional regulator  34.76 
 
 		 219 aa  98.2  8e-20  Polaromonas naphthalenivorans CJ2  Bacteria  normal  1  normal  0.0920509 
 
 
-
 
NC_010524  Lcho_1574  two component LuxR family transcriptional regulator  33.64 
 
 		 219 aa  97.4  1e-19  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.347453 
 
 
-
 
NC_009720  Xaut_1450  two component LuxR family transcriptional regulator  35.35 
 
 		 224 aa  97.4  1e-19  Xanthobacter autotrophicus Py2  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010511  M446_0625  two component LuxR family transcriptional regulator  37.79 
 
 		 221 aa  92.8  3e-18  Methylobacterium sp. 4-46  Bacteria  normal  0.793996  hitchhiker  0.00440064 
 
 
-
 
NC_011138  MADE_02155  putative regulator in two-component regulatory system ; LuxR family protein  31.88 
 
 		 211 aa  92.4  4e-18  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  1  n/a   
 
 
-
 
NC_007298  Daro_0264  two component LuxR family transcriptional regulator  35.48 
 
 		 221 aa  91.7  7e-18  Dechloromonas aromatica RCB  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008700  Sama_0522  response regulator receiver protein  33.64 
 
 		 223 aa  91.3  9e-18  Shewanella amazonensis SB2B  Bacteria  normal  1  normal  0.211294 
 
 
-
 
NC_007912  Sde_1571  XRE family transcriptional regulator  32.89 
 
 		 227 aa  90.1  2e-17  Saccharophagus degradans 2-40  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007963  Csal_0866  two component LuxR family transcriptional regulator  32.08 
 
 		 220 aa  90.1  2e-17  Chromohalobacter salexigens DSM 3043  Bacteria  normal  1  n/a   
 
 
-
 
NC_008782  Ajs_0555  two component LuxR family transcriptional regulator  34.26 
 
 		 232 aa  90.1  2e-17  Acidovorax sp. JS42  Bacteria  normal  0.173401  normal  0.808062 
 
 
-
 
NC_014212  Mesil_2848  two component transcriptional regulator, LuxR family  31.4 
 
 		 212 aa  90.5  2e-17  Meiothermus silvanus DSM 9946  Bacteria  normal  0.857037  normal  0.944506 
 
 
-
 
NC_009487  SaurJH9_1902  two component LuxR family transcriptional regulator  30.77 
 
 		 207 aa  89.7  3e-17  Staphylococcus aureus subsp. aureus JH9  Bacteria  hitchhiker  0.00000041006  n/a   
 
 
-
 
NC_008577  Shewana3_3459  two component LuxR family transcriptional regulator  33.65 
 
 		 223 aa  89.7  3e-17  Shewanella sp. ANA-3  Bacteria  normal  0.306063  normal  0.532773 
 
 
-
 
NC_009632  SaurJH1_1936  response regulator receiver  30.77 
 
 		 207 aa  89.7  3e-17  Staphylococcus aureus subsp. aureus JH1  Bacteria  unclonable  0.000000150819  n/a   
 
 
-
 
NC_009952  Dshi_0465  two component transcriptional regulator  31.67 
 
 		 239 aa  89.4  4e-17  Dinoroseobacter shibae DFL 12  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008781  Pnap_2689  two component LuxR family transcriptional regulator  31.98 
 
 		 224 aa  89.4  4e-17  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.270095  normal  0.632538 
 
 
-
 
NC_014151  Cfla_2290  two component transcriptional regulator, LuxR family  33.82 
 
 		 208 aa  89  5e-17  Cellulomonas flavigena DSM 20109  Bacteria  decreased coverage  0.00802134  hitchhiker  0.000628596 
 
 
-
 
NC_009720  Xaut_0991  two component LuxR family transcriptional regulator  32.71 
 
 		 210 aa  89  5e-17  Xanthobacter autotrophicus Py2  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009972  Haur_4485  two component LuxR family transcriptional regulator  34.45 
 
 		 213 aa  89  5e-17  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.310872  n/a   
 
 
-
 
NC_009485  BBta_0852  two component LuxR family transcriptional regulator  36.06 
 
 		 224 aa  88.6  6e-17  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.852842  normal  0.596615 
 
 
-
 
NC_008740  Maqu_2218  two component LuxR family transcriptional regulator  32.08 
 
 		 221 aa  88.6  6e-17  Marinobacter aquaeolei VT8  Bacteria  normal  1  n/a   
 
 
-
 
NC_008321  Shewmr4_3283  two component LuxR family transcriptional regulator  33.18 
 
 		 223 aa  88.2  8e-17  Shewanella sp. MR-4  Bacteria  normal  1  normal  0.335218 
 
 
-
 
NC_013595  Sros_1910  response regulator receiver protein  35.21 
 
 		 226 aa  88.2  9e-17  Streptosporangium roseum DSM 43021  Bacteria  normal  0.238062  normal  0.36963 
 
 
-
 
NC_011138  MADE_02260  Response regulator, LuxR family (CheY, HTH domains)  28.95 
 
 		 222 aa  88.2  9e-17  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  1  n/a   
 
 
-
 
NC_009783  VIBHAR_00157  transcriptional regulator LuxR  32.3 
 
 		 211 aa  87.4  1e-16  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_007974  Rmet_4854  putative two component LuxR family transcriptional regulator  33.01 
 
 		 211 aa  87.8  1e-16  Cupriavidus metallidurans CH34  Bacteria  normal  0.133138  normal  0.31096 
 
 
-
 
NC_008321  Shewmr4_1588  two component LuxR family transcriptional regulator  32.39 
 
 		 220 aa  87.4  1e-16  Shewanella sp. MR-4  Bacteria  normal  0.0618082  normal  0.0591517 
 
 
-
 
NC_008322  Shewmr7_1663  two component LuxR family transcriptional regulator  32.39 
 
 		 220 aa  87.8  1e-16  Shewanella sp. MR-7  Bacteria  normal  0.0154836  unclonable  0.0000152825 
 
 
-
 
NC_008345  Sfri_3170  two component transcriptional regulator, LuxR family protein  30.81 
 
 		 227 aa  87.4  1e-16  Shewanella frigidimarina NCIMB 400  Bacteria  normal  1  n/a   
 
 
-
 
NC_009636  Smed_0164  two component LuxR family transcriptional regulator  34.62 
 
 		 215 aa  87  2e-16  Sinorhizobium medicae WSM419  Bacteria  normal  0.523755  normal  1 
 
 
-
 
NC_013530  Xcel_0190  two component transcriptional regulator, LuxR family  33.65 
 
 		 219 aa  87  2e-16  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.146862  n/a   
 
 
-
 
NC_011894  Mnod_4192  two component transcriptional regulator, LuxR family  35.16 
 
 		 251 aa  87  2e-16  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.270399  n/a   
 
 
-
 
NC_013947  Snas_5595  two component transcriptional regulator, LuxR family  33.18 
 
 		 215 aa  87  2e-16  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009921  Franean1_2449  two component LuxR family transcriptional regulator  34.47 
 
 		 211 aa  86.7  2e-16  Frankia sp. EAN1pec  Bacteria  normal  1  normal  0.265588 
 
 
-
 
NC_013411  GYMC61_1316  two component transcriptional regulator, LuxR family  32.24 
 
 		 210 aa  87  2e-16  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013385  Adeg_1034  two component transcriptional regulator, LuxR family  32.54 
 
 		 213 aa  86.3  3e-16  Ammonifex degensii KC4  Bacteria  normal  1  n/a   
 
 
-
 
NC_013411  GYMC61_3240  two component transcriptional regulator, LuxR family  28.64 
 
 		 224 aa  86.3  3e-16  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_007005  Psyr_1384  LuxR response regulator receiver  33.64 
 
 		 215 aa  86.3  3e-16  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009439  Pmen_1291  two component LuxR family transcriptional regulator  32.23 
 
 		 215 aa  86.3  3e-16  Pseudomonas mendocina ymp  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008577  Shewana3_1732  two component LuxR family transcriptional regulator  32.87 
 
 		 220 aa  86.3  3e-16  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.0049943  normal  0.183248 
 
 
-
 
NC_013124  Afer_1446  two component transcriptional regulator, LuxR family  32.87 
 
 		 223 aa  86.3  4e-16  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  1  n/a   
 
 
-
 
NC_004347  SO_2648  LuxR family DNA-binding response regulator  32.86 
 
 		 220 aa  85.9  4e-16  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008322  Shewmr7_0664  two component LuxR family transcriptional regulator  32.23 
 
 		 223 aa  85.9  4e-16  Shewanella sp. MR-7  Bacteria  normal  1  normal  0.358413 
 
 
-
 
NC_008346  Swol_0186  response regulator receiver protein  29.81 
 
 		 213 aa  86.3  4e-16  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  decreased coverage  0.00000327076  n/a   
 
 
-
 
NC_004578  PSPTO_4027  DNA-binding response regulator, LuxR family  32.08 
 
 		 215 aa  85.5  5e-16  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  1  n/a   
 
 
-
 
NC_013595  Sros_2445  response regulator receiver protein  34.58 
 
 		 218 aa  85.5  5e-16  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0115114  normal  0.02149 
 
 
-
 
NC_011071  Smal_2061  two component transcriptional regulator, LuxR family  32.86 
 
 		 224 aa  85.5  5e-16  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.737796  normal  1 
 
 
-
 
NC_009457  VC0395_A2275  LuxR family transcriptional regulator  31.1 
 
 		 209 aa  85.9  5e-16  Vibrio cholerae O395  Bacteria  normal  0.314776  n/a   
 
 
-
 
NC_009664  Krad_1981  two component transcriptional regulator, LuxR family  32.58 
 
 		 230 aa  85.1  7e-16  Kineococcus radiotolerans SRS30216  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010511  M446_2941  two component LuxR family transcriptional regulator  34.68 
 
 		 251 aa  85.1  7e-16  Methylobacterium sp. 4-46  Bacteria  normal  0.80826  normal  0.0563961 
 
 
-
 
NC_009523  RoseRS_4275  two component LuxR family transcriptional regulator  32.06 
 
 		 226 aa  85.1  7e-16  Roseiflexus sp. RS-1  Bacteria  normal  0.798613  normal  0.287125 
 
 
-
 
NC_011989  Avi_0584  two component response regulator  33.65 
 
 		 215 aa  84.7  8e-16  Agrobacterium vitis S4  Bacteria  normal  0.566414  n/a   
 
 
-
 
NC_009052  Sbal_2493  two component LuxR family transcriptional regulator  33.33 
 
 		 220 aa  84.7  8e-16  Shewanella baltica OS155  Bacteria  normal  1  n/a   
 
 
-
 
NC_009665  Shew185_2486  two component LuxR family transcriptional regulator  33.33 
 
 		 220 aa  84.7  8e-16  Shewanella baltica OS185  Bacteria  normal  0.637953  n/a   
 
 
-
 
NC_014248  Aazo_0236  LuxR family two component transcriptional regulator  30.7 
 
 		 218 aa  84.7  8e-16  'Nostoc azollae' 0708  Bacteria  normal  1  n/a   
 
 
-
 
NC_013456  VEA_002211  transcriptional regulator LuxR family  31.68 
 
 		 209 aa  84.3  0.000000000000001  Vibrio sp. Ex25  Bacteria  normal  1  n/a   
 
 
-
 
NC_013946  Mrub_1071  two component LuxR family transcriptional regulator  33.01 
 
 		 209 aa  84.7  0.000000000000001  Meiothermus ruber DSM 1279  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007413  Ava_2028  two component LuxR family transcriptional regulator  30.09 
 
 		 219 aa  84.3  0.000000000000001  Anabaena variabilis ATCC 29413  Bacteria  normal  0.515359  normal  1 
 
 
-
 
NC_007643  Rru_A2232  two component LuxR family transcriptional regulator  32.09 
 
 		 212 aa  84  0.000000000000001  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  1  n/a   
 
 
-
 
NC_011071  Smal_3975  two component transcriptional regulator, LuxR family  30.99 
 
 		 221 aa  84.3  0.000000000000001  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.0482097  normal  0.237128 
 
 
-
 
NC_008228  Patl_1981  two component LuxR family transcriptional regulator  29.81 
 
 		 213 aa  84.3  0.000000000000001  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.607794  n/a   
 
 
-
 
NC_013595  Sros_3251  response regulator receiver protein  31.16 
 
 		 221 aa  84.3  0.000000000000001  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0793449  normal  1 
 
 
-
 
NC_011663  Sbal223_1858  two component transcriptional regulator, LuxR family  32.87 
 
 		 220 aa  84  0.000000000000002  Shewanella baltica OS223  Bacteria  decreased coverage  0.00870294  decreased coverage  0.00000000166193 
 
 
-
 
NC_009767  Rcas_1355  two component LuxR family transcriptional regulator  32.56 
 
 		 230 aa  83.6  0.000000000000002  Roseiflexus castenholzii DSM 13941  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012560  Avin_38490  Response regulator, LuxR family  32.55 
 
 		 215 aa  83.2  0.000000000000002  Azotobacter vinelandii DJ  Bacteria  normal  1  n/a   
 
 
-
 
NC_011899  Hore_21820  two component transcriptional regulator, LuxR family  30.73 
 
 		 211 aa  83.2  0.000000000000002  Halothermothrix orenii H 168  Bacteria  normal  1  n/a   
 
 
-
 
NC_013093  Amir_1910  two component transcriptional regulator, LuxR family  33.81 
 
 		 218 aa  83.2  0.000000000000003  Actinosynnema mirum DSM 43827  Bacteria  normal  1  n/a   
 
 
-
 
NC_013159  Svir_33010  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  35.71 
 
 		 223 aa  83.2  0.000000000000003  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.163463  normal  1 
 
 
-
 
NC_012669  Bcav_1611  two component transcriptional regulator, LuxR family  31.1 
 
 		 208 aa  82.8  0.000000000000003  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.548364  normal  1 
 
 
-
 
NC_013235  Namu_0523  two component transcriptional regulator, LuxR family  30.66 
 
 		 230 aa  82.8  0.000000000000004  Nakamurella multipartita DSM 44233  Bacteria  normal  1  normal  1 
 
 
-
 
NC_014165  Tbis_3505  LuxR family two component transcriptional regulator  32.69 
 
 		 213 aa  82.8  0.000000000000004  Thermobispora bispora DSM 43833  Bacteria  normal  0.345096  normal  1 
 
 
-
 
NC_007958  RPD_0836  LuxR family two component transcriptional regulator  33.65 
 
 		 224 aa  82.4  0.000000000000004  Rhodopseudomonas palustris BisB5  Bacteria  normal  1  normal  0.0588074 
 
 
-
 
NC_010717  PXO_03258  two-component system regulatory protein  31.6 
 
 		 222 aa  82.4  0.000000000000004  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  1  n/a   
 
 
-
 
NC_010506  Swoo_2721  two component LuxR family transcriptional regulator  32.26 
 
 		 219 aa  82.8  0.000000000000004  Shewanella woodyi ATCC 51908  Bacteria  normal  1  hitchhiker  0.001499 
 
 
-
 
NC_008345  Sfri_2305  two component transcriptional regulator, LuxR family protein  31.58 
 
 		 220 aa  82.4  0.000000000000004  Shewanella frigidimarina NCIMB 400  Bacteria  normal  1  n/a   
 
 
-
 
NC_013235  Namu_4738  two component transcriptional regulator, LuxR family  33.18 
 
 		 233 aa  82.4  0.000000000000004  Nakamurella multipartita DSM 44233  Bacteria  normal  1  normal  1 
 
 
-
 
NC_002947  PP_1635  LuxR family two component transcriptional regulator  29.86 
 
 		 216 aa  82  0.000000000000005  Pseudomonas putida KT2440  Bacteria  normal  1  normal  0.0994806 
 
 
-
 
NC_009997  Sbal195_2606  two component LuxR family transcriptional regulator  32.87 
 
 		 220 aa  82  0.000000000000005  Shewanella baltica OS195  Bacteria  hitchhiker  0.00642184  hitchhiker  0.00275886 
 
 
-
 
NC_008578  Acel_0518  two component LuxR family transcriptional regulator  33.18 
 
 		 225 aa  82  0.000000000000005  Acidothermus cellulolyticus 11B  Bacteria  normal  1  normal  0.665179 
 
 
-
 
NC_010725  Mpop_4737  two component transcriptional regulator, LuxR family  33.18 
 
 		 241 aa  82.4  0.000000000000005  Methylobacterium populi BJ001  Bacteria  normal  1  normal  0.0133592 
 
 
-
 
NC_009512  Pput_4082  two component LuxR family transcriptional regulator  29.86 
 
 		 216 aa  82  0.000000000000005  Pseudomonas putida F1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010338  Caul_0621  two component LuxR family transcriptional regulator  33.49 
 
 		 212 aa  82  0.000000000000006  Caulobacter sp. K31  Bacteria  normal  1  normal  0.881689 
 
 
-
 
NC_007778  RPB_4565  two component LuxR family transcriptional regulator  33.17 
 
 		 224 aa  82  0.000000000000006  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.156913  normal  1 
 
 
-
 
NC_008700  Sama_2076  response regulator receiver protein  33.49 
 
 		 238 aa  82  0.000000000000006  Shewanella amazonensis SB2B  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007643  Rru_A3229  two component LuxR family transcriptional regulator  32.87 
 
 		 224 aa  81.6  0.000000000000007  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  1  n/a   
 
 
-
 
NC_008025  Dgeo_1708  two component LuxR family transcriptional regulator  30.92 
 
 		 221 aa  81.6  0.000000000000007  Deinococcus geothermalis DSM 11300  Bacteria  normal  1  normal  0.685529 
 
 
-
 
NC_010571  Oter_2926  two component LuxR family transcriptional regulator  31.37 
 
 		 223 aa  81.6  0.000000000000007  Opitutus terrae PB90-1  Bacteria  normal  0.380263  normal  1 
 
 
-
 
NC_012034  Athe_2627  two component transcriptional regulator, LuxR family  26.76 
 
 		 211 aa  81.6  0.000000000000008  Anaerocellum thermophilum DSM 6725  Bacteria  normal  1  n/a   
 
 
-
 
NC_012856  Rpic12D_2334  two component transcriptional regulator, LuxR family  35.29 
 
 		 221 aa  81.6  0.000000000000008  Ralstonia pickettii 12D  Bacteria  normal  0.477601  normal  0.267999 
 
 
-
 
NC_013037  Dfer_2055  two component transcriptional regulator, LuxR family  27.93 
 
 		 220 aa  81.6  0.000000000000008  Dyadobacter fermentans DSM 18053  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007492  Pfl01_1182  two component LuxR family transcriptional regulator  32.09 
 
 		 216 aa  81.6  0.000000000000008  Pseudomonas fluorescens Pf0-1  Bacteria  normal  1  normal  0.192356 
 
 
-
 
NC_009667  Oant_0408  two component LuxR family transcriptional regulator  32.86 
 
 		 214 aa  81.6  0.000000000000008  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.82136  n/a   
 
 
-
 
NC_010682  Rpic_2723  two component transcriptional regulator, LuxR family  35.29 
 
 		 221 aa  81.6  0.000000000000008  Ralstonia pickettii 12J  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009092  Shew_1545  two component LuxR family transcriptional regulator  33.18 
 
 		 219 aa  81.3  0.000000000000009  Shewanella loihica PV-4  Bacteria  normal  0.505974  normal  1 
 
 
-
 
NC_011004  Rpal_0920  two component transcriptional regulator, LuxR family  31.73 
 
 		 225 aa  80.9  0.00000000000001  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.491034  n/a   
 
 
-
 
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