More than 300 homologs were found in PanDaTox collection
for query gene Swoo_1933 on replicon NC_010506
Organism: Shewanella woodyi ATCC 51908



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010506  Swoo_1933  LysR family transcriptional regulator  100 
 
 
301 aa  618  1e-176  Shewanella woodyi ATCC 51908  Bacteria  normal  normal  0.0399555 
 
 
-
 
NC_009831  Ssed_2686  LysR family transcriptional regulator  82.19 
 
 
297 aa  509  1e-143  Shewanella sediminis HAW-EB3  Bacteria  normal  normal  0.524728 
 
 
-
 
NC_009901  Spea_1875  LysR family transcriptional regulator  80.76 
 
 
299 aa  506  9.999999999999999e-143  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_1965  LysR family transcriptional regulator  79.05 
 
 
304 aa  491  9.999999999999999e-139  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009092  Shew_2153  LysR family transcriptional regulator  80.48 
 
 
301 aa  492  9.999999999999999e-139  Shewanella loihica PV-4  Bacteria  normal  normal  0.638305 
 
 
-
 
NC_008321  Shewmr4_2290  LysR family transcriptional regulator  79.32 
 
 
304 aa  489  1e-137  Shewanella sp. MR-4  Bacteria  decreased coverage  0.00000611943  normal 
 
 
-
 
NC_008322  Shewmr7_2362  LysR family transcriptional regulator  79.32 
 
 
304 aa  489  1e-137  Shewanella sp. MR-7  Bacteria  normal  0.0454134  normal  0.136219 
 
 
-
 
NC_008577  Shewana3_2480  LysR family transcriptional regulator  79.32 
 
 
304 aa  489  1e-137  Shewanella sp. ANA-3  Bacteria  normal  0.0120237  normal 
 
 
-
 
NC_011663  Sbal223_1733  transcriptional regulator, LysR family  77.7 
 
 
304 aa  484  1e-136  Shewanella baltica OS223  Bacteria  normal  0.540209  hitchhiker  0.00457022 
 
 
-
 
NC_009665  Shew185_2652  LysR family transcriptional regulator  77.7 
 
 
304 aa  485  1e-136  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_2614  LysR family transcriptional regulator  77.7 
 
 
304 aa  487  1e-136  Shewanella baltica OS155  Bacteria  hitchhiker  0.00872541  n/a   
 
 
-
 
NC_009438  Sputcn32_1672  LysR family transcriptional regulator  78.72 
 
 
304 aa  487  1e-136  Shewanella putrefaciens CN-32  Bacteria  normal  0.551623  n/a   
 
 
-
 
NC_009997  Sbal195_2727  LysR family transcriptional regulator  77.7 
 
 
304 aa  485  1e-136  Shewanella baltica OS195  Bacteria  normal  0.182724  normal  0.41842 
 
 
-
 
NC_008345  Sfri_2325  transcriptional regulator, LysR family protein  75.25 
 
 
309 aa  473  1e-132  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.695132  n/a   
 
 
-
 
NC_008700  Sama_1570  LysR family transcriptional regulator  75.85 
 
 
304 aa  465  9.999999999999999e-131  Shewanella amazonensis SB2B  Bacteria  normal  0.0308383  normal 
 
 
-
 
NC_007954  Sden_2161  regulatory protein, LysR  76.37 
 
 
309 aa  466  9.999999999999999e-131  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_012560  Avin_50160  LysR family transcriptional regulator protein  49.65 
 
 
300 aa  301  1e-80  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_007794  Saro_2465  LysR family transcriptional regulator  34.56 
 
 
298 aa  184  2.0000000000000003e-45  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_1901  putative transcriptional regulator  28.9 
 
 
309 aa  140  1.9999999999999998e-32  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_22470  LysR family transcriptional regulator  28.9 
 
 
309 aa  141  1.9999999999999998e-32  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.0122765  hitchhiker  0.000000469703 
 
 
-
 
NC_007492  Pfl01_1430  LysR family transcriptional regulator  29.55 
 
 
307 aa  139  6e-32  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.596969  normal  0.279946 
 
 
-
 
NC_009654  Mmwyl1_0769  LysR family transcriptional regulator  30.61 
 
 
306 aa  139  7e-32  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_004347  SO_2438  LysR family transcriptional regulator  30.03 
 
 
302 aa  137  2e-31  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_007005  Psyr_3825  regulatory protein, LysR:LysR, substrate-binding  28.87 
 
 
307 aa  135  6.0000000000000005e-31  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  hitchhiker  0.00432704 
 
 
-
 
NC_009438  Sputcn32_1930  LysR family transcriptional regulator  29.93 
 
 
303 aa  135  7.000000000000001e-31  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_1296  LysR family transcriptional regulator  29.86 
 
 
308 aa  134  9.999999999999999e-31  Pseudomonas mendocina ymp  Bacteria  normal  0.46858  normal  0.712623 
 
 
-
 
NC_012560  Avin_19100  transcriptional regulator, LysR family  28.57 
 
 
303 aa  134  1.9999999999999998e-30  Azotobacter vinelandii DJ  Bacteria  normal  0.672089  n/a   
 
 
-
 
NC_008321  Shewmr4_1889  LysR family transcriptional regulator  30.41 
 
 
300 aa  132  6e-30  Shewanella sp. MR-4  Bacteria  normal  0.457269  normal 
 
 
-
 
NC_008322  Shewmr7_2089  LysR family transcriptional regulator  30.41 
 
 
300 aa  132  6e-30  Shewanella sp. MR-7  Bacteria  normal  normal  0.419213 
 
 
-
 
NC_010322  PputGB1_4046  LysR family transcriptional regulator  29.24 
 
 
307 aa  132  6e-30  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_1944  LysR family transcriptional regulator  30.41 
 
 
300 aa  132  6.999999999999999e-30  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_4539  LysR family transcriptional regulator  28.9 
 
 
307 aa  132  7.999999999999999e-30  Pseudomonas putida KT2440  Bacteria  normal  0.28189  normal 
 
 
-
 
NC_009512  Pput_1351  LysR family transcriptional regulator  28.9 
 
 
307 aa  132  7.999999999999999e-30  Pseudomonas putida F1  Bacteria  normal  normal  0.180221 
 
 
-
 
NC_010501  PputW619_3833  LysR family transcriptional regulator  28.9 
 
 
307 aa  132  9e-30  Pseudomonas putida W619  Bacteria  normal  normal  0.450115 
 
 
-
 
NC_008043  TM1040_3283  LysR family transcriptional regulator  30.14 
 
 
296 aa  131  1.0000000000000001e-29  Ruegeria sp. TM1040  Bacteria  normal  normal  0.995558 
 
 
-
 
NC_009654  Mmwyl1_3537  LysR family transcriptional regulator  32.94 
 
 
306 aa  131  1.0000000000000001e-29  Marinomonas sp. MWYL1  Bacteria  normal  normal  0.0653502 
 
 
-
 
NC_009052  Sbal_2030  LysR family transcriptional regulator  29.49 
 
 
302 aa  128  1.0000000000000001e-28  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_2315  LysR family transcriptional regulator  29.49 
 
 
302 aa  128  1.0000000000000001e-28  Shewanella baltica OS185  Bacteria  normal  0.958011  n/a   
 
 
-
 
NC_009997  Sbal195_2431  LysR family transcriptional regulator  29.49 
 
 
302 aa  128  1.0000000000000001e-28  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_007973  Rmet_2580  LysR family transcriptional regulator  29.53 
 
 
342 aa  126  4.0000000000000003e-28  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.64734 
 
 
-
 
NC_011663  Sbal223_2032  transcriptional regulator, LysR family  29.33 
 
 
302 aa  125  6e-28  Shewanella baltica OS223  Bacteria  normal  0.10229  hitchhiker  0.000329187 
 
 
-
 
NC_008740  Maqu_0852  LysR family transcriptional regulator  29.92 
 
 
306 aa  125  1e-27  Marinobacter aquaeolei VT8  Bacteria  normal  0.0564501  n/a   
 
 
-
 
NC_002977  MCA2269  LysR family transcriptional regulator  30.23 
 
 
300 aa  124  2e-27  Methylococcus capsulatus str. Bath  Bacteria  normal  n/a   
 
 
-
 
NC_007510  Bcep18194_A4973  LysR family transcriptional regulator  30.97 
 
 
312 aa  124  2e-27  Burkholderia sp. 383  Bacteria  hitchhiker  0.00010332  normal  0.633614 
 
 
-
 
NC_008700  Sama_1852  LysR family transcriptional regulator  28.82 
 
 
301 aa  124  2e-27  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_010682  Rpic_2407  transcriptional regulator, LysR family  29.43 
 
 
300 aa  123  4e-27  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_007954  Sden_1875  regulatory protein, LysR  28.23 
 
 
324 aa  122  7e-27  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_1175  LysR family transcriptional regulator  28.31 
 
 
304 aa  120  1.9999999999999998e-26  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_007347  Reut_A0901  LysR family transcriptional regulator  28.19 
 
 
335 aa  121  1.9999999999999998e-26  Ralstonia eutropha JMP134  Bacteria  normal  0.273357  n/a   
 
 
-
 
NC_012856  Rpic12D_2013  transcriptional regulator, LysR family  29.1 
 
 
300 aa  121  1.9999999999999998e-26  Ralstonia pickettii 12D  Bacteria  normal  0.706751  normal 
 
 
-
 
NC_010557  BamMC406_5596  LysR family transcriptional regulator  29.85 
 
 
302 aa  119  3.9999999999999996e-26  Burkholderia ambifaria MC40-6  Bacteria  normal  0.21872  normal 
 
 
-
 
NC_003295  RSc2209  transcriptional regulator transcription regulator protein  31.13 
 
 
300 aa  119  6e-26  Ralstonia solanacearum GMI1000  Bacteria  normal  0.852985  normal  0.255336 
 
 
-
 
NC_008322  Shewmr7_1293  LysR family transcriptional regulator  31.62 
 
 
297 aa  119  7e-26  Shewanella sp. MR-7  Bacteria  normal  0.585298  normal 
 
 
-
 
NC_007298  Daro_0552  LysR family transcriptional regulator  30.5 
 
 
303 aa  118  9.999999999999999e-26  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.268778 
 
 
-
 
NC_013889  TK90_1757  transcriptional regulator, LysR family  30.42 
 
 
310 aa  118  9.999999999999999e-26  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.187879 
 
 
-
 
NC_008345  Sfri_2193  transcriptional regulator, LysR family protein  25.69 
 
 
299 aa  118  9.999999999999999e-26  Shewanella frigidimarina NCIMB 400  Bacteria  hitchhiker  0.000418662  n/a   
 
 
-
 
NC_010512  Bcenmc03_7036  LysR family transcriptional regulator  28.73 
 
 
302 aa  117  1.9999999999999998e-25  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.753996  normal  0.202987 
 
 
-
 
NC_008321  Shewmr4_1222  LysR family transcriptional regulator  31.23 
 
 
297 aa  117  1.9999999999999998e-25  Shewanella sp. MR-4  Bacteria  normal  0.907683  normal 
 
 
-
 
NC_008577  Shewana3_1223  LysR family transcriptional regulator  31.23 
 
 
320 aa  117  1.9999999999999998e-25  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_004347  SO_3318  LysR family transcriptional regulator  29.96 
 
 
297 aa  116  3.9999999999999997e-25  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008060  Bcen_1459  LysR family transcriptional regulator  28.36 
 
 
302 aa  116  3.9999999999999997e-25  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008392  Bamb_5812  LysR family transcriptional regulator  29.1 
 
 
302 aa  116  3.9999999999999997e-25  Burkholderia ambifaria AMMD  Bacteria  normal  0.394289  normal  0.69254 
 
 
-
 
NC_008544  Bcen2424_6369  LysR family transcriptional regulator  28.36 
 
 
302 aa  116  3.9999999999999997e-25  Burkholderia cenocepacia HI2424  Bacteria  normal  normal 
 
 
-
 
NC_007912  Sde_3745  putative transcriptional regulator  26.42 
 
 
304 aa  116  6e-25  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.857978 
 
 
-
 
NC_010512  Bcenmc03_7006  LysR family transcriptional regulator  29.15 
 
 
302 aa  115  7.999999999999999e-25  Burkholderia cenocepacia MC0-3  Bacteria  normal  hitchhiker  0.00245056 
 
 
-
 
NC_009438  Sputcn32_2658  LysR family transcriptional regulator  30.08 
 
 
297 aa  114  1.0000000000000001e-24  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_011666  Msil_3204  transcriptional regulator, LysR family  29.72 
 
 
307 aa  114  1.0000000000000001e-24  Methylocella silvestris BL2  Bacteria  n/a    normal  0.340375 
 
 
-
 
NC_008700  Sama_1388  LysR family transcriptional regulator  29.8 
 
 
297 aa  114  2.0000000000000002e-24  Shewanella amazonensis SB2B  Bacteria  normal  0.837907  normal  0.0605197 
 
 
-
 
NC_009831  Ssed_1776  LysR family transcriptional regulator  27.63 
 
 
283 aa  113  4.0000000000000004e-24  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_1907  LysR family transcriptional regulator  31.35 
 
 
312 aa  113  4.0000000000000004e-24  Rhodoferax ferrireducens T118  Bacteria  normal  0.683551  n/a   
 
 
-
 
NC_007952  Bxe_B2375  LysR family transcriptional regulator  30.04 
 
 
306 aa  113  4.0000000000000004e-24  Burkholderia xenovorans LB400  Bacteria  normal  0.624275  normal 
 
 
-
 
NC_010625  Bphy_5712  LysR family transcriptional regulator  29.01 
 
 
306 aa  112  6e-24  Burkholderia phymatum STM815  Bacteria  normal  normal  0.462122 
 
 
-
 
NC_008060  Bcen_1489  LysR family transcriptional regulator  28.78 
 
 
302 aa  112  7.000000000000001e-24  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008544  Bcen2424_6340  LysR family transcriptional regulator  28.78 
 
 
302 aa  112  7.000000000000001e-24  Burkholderia cenocepacia HI2424  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_2088  LysR family transcriptional regulator  28.12 
 
 
303 aa  111  1.0000000000000001e-23  Shewanella loihica PV-4  Bacteria  normal  0.82775  normal 
 
 
-
 
NC_009052  Sbal_2996  LysR family transcriptional regulator  28.47 
 
 
297 aa  111  2.0000000000000002e-23  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_011071  Smal_1503  transcriptional regulator, LysR family  29.69 
 
 
306 aa  111  2.0000000000000002e-23  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.0885147  normal 
 
 
-
 
NC_009621  Smed_5229  LysR family transcriptional regulator  29.53 
 
 
307 aa  111  2.0000000000000002e-23  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_010676  Bphyt_6122  transcriptional regulator, LysR family  30.15 
 
 
359 aa  110  3e-23  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_010512  Bcenmc03_6436  LysR family transcriptional regulator  29.43 
 
 
320 aa  110  4.0000000000000004e-23  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_008062  Bcen_5569  LysR family transcriptional regulator  29.43 
 
 
320 aa  109  5e-23  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.21388  n/a   
 
 
-
 
NC_008544  Bcen2424_5934  LysR family transcriptional regulator  29.43 
 
 
320 aa  109  5e-23  Burkholderia cenocepacia HI2424  Bacteria  normal  normal 
 
 
-
 
NC_008688  Pden_4563  LysR family transcriptional regulator  27.21 
 
 
303 aa  109  6e-23  Paracoccus denitrificans PD1222  Bacteria  normal  normal  0.500086 
 
 
-
 
NC_010725  Mpop_1088  transcriptional regulator, LysR family  27.78 
 
 
307 aa  108  8.000000000000001e-23  Methylobacterium populi BJ001  Bacteria  normal  normal  0.0130625 
 
 
-
 
NC_009092  Shew_2013  putative DNA-binding transcriptional regulator  27.78 
 
 
300 aa  108  1e-22  Shewanella loihica PV-4  Bacteria  unclonable  0.0000000422246  normal  0.025363 
 
 
-
 
NC_008752  Aave_3030  LysR family transcriptional regulator  27.89 
 
 
315 aa  107  2e-22  Acidovorax citrulli AAC00-1  Bacteria  normal  0.503722  normal  0.316328 
 
 
-
 
NC_007948  Bpro_2902  LysR family transcriptional regulator  29.77 
 
 
319 aa  107  2e-22  Polaromonas sp. JS666  Bacteria  normal  0.374405  normal 
 
 
-
 
NC_008709  Ping_3247  transcriptional regulator, substrate-binding of LysR family protein  27.48 
 
 
301 aa  107  3e-22  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_012912  Dd1591_3521  transcriptional regulator, LysR family  27.67 
 
 
298 aa  107  3e-22  Dickeya zeae Ech1591  Bacteria  normal  0.81702  n/a   
 
 
-
 
NC_007511  Bcep18194_B0504  LysR family transcriptional regulator  29.1 
 
 
302 aa  107  3e-22  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_007964  Nham_1043  LysR family transcriptional regulator  29.18 
 
 
309 aa  107  3e-22  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_0923  putative DNA-binding transcriptional regulator  26.51 
 
 
300 aa  107  3e-22  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_010552  BamMC406_4888  LysR family transcriptional regulator  26.97 
 
 
306 aa  106  4e-22  Burkholderia ambifaria MC40-6  Bacteria  normal  0.842782  hitchhiker  0.000000597964 
 
 
-
 
NC_011757  Mchl_2045  transcriptional regulator, LysR family  26.9 
 
 
307 aa  106  4e-22  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.815295 
 
 
-
 
NC_008228  Patl_1675  LysR family transcriptional regulator  29.41 
 
 
300 aa  106  4e-22  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.297229  n/a   
 
 
-
 
NC_008345  Sfri_1805  putative DNA-binding transcriptional regulator  25.9 
 
 
300 aa  107  4e-22  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.524911  n/a   
 
 
-
 
NC_007947  Mfla_1835  LysR family transcriptional regulator  27.73 
 
 
300 aa  106  5e-22  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_008391  Bamb_4371  LysR family transcriptional regulator  27.47 
 
 
306 aa  106  5e-22  Burkholderia ambifaria AMMD  Bacteria  normal  0.120427  normal  0.0114569 
 
 
-
 
NC_009665  Shew185_3011  LysR family transcriptional regulator  28.06 
 
 
297 aa  106  6e-22  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_010172  Mext_1726  LysR substrate-binding  26.9 
 
 
307 aa  105  6e-22  Methylobacterium extorquens PA1  Bacteria  normal  0.127689  normal 
 
 
-
 
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