Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_2290 |
Symbol | |
ID | 4252861 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | - |
Start bp | 2731482 |
End bp | 2732396 |
Gene Length | 915 bp |
Protein Length | 304 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 638118915 |
Product | LysR family transcriptional regulator |
Protein accession | YP_734418 |
Protein GI | 113970625 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.00000611943 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 34 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGCATCG ATATTGATGC TTTTAATGTG CTGCAAGTGC TGGTGGAAGA GGGCAGTTTT GCCAAAGCCG CCGAGCGTTT ACACAAGGCG CAATCGGCGG TCAGCTATCA GGTCAAAAAG CTGGAAGAAC ATTTAGGTGT GCAACTTTTT AGTCGGGATC AATACCGCGC CGAGTTGACG AGTGAAGGGC GGGTGATCTT GGCCGAGGGG CAAAGACTGT TGCAACACCT TGCCAATATT GAACATCTTG CCAGTCGTTT CAGTGAAGGT TGGGAGCCTA AGCTTGAGTT AGTGATCGAT GGCGCCTTGC CGATGGAGCC GATTATGACG GCACTTAAAC GGATGGCAGA GCATCAAATT CCGACAAAAA TTCAGCTCAA TATGGAGTTT TTGGGTGGTG TGCAGCACAG ATTCGAGCGT GACAATGCAG ATCTGATGTT GGTTAAAGAC TACCGCACAG GCCCCTATTA TCACCCACAG CCCCTCCCTG CGATAACCAG TGTACTGGTG ACGAGTGCTT TACATCCCTT GGCTCAACAA AAACACATCA GTTTGCCCGA GTTACAGCAA CATGTTGAGC TGACCATCGA AGATTCCTCC CCCAATAAGA CTTATCGAGA TGAGCTGCAA TTCGGTGGCG ATAAAGTGTT CTATCTTTCT GGTTTTATTA TGAAAAAGAA CGCCTTGTTA AAAGGGCTCG GTTTTGGTTG GTTGCCTGAT TTTCTGGTGC AGGAGGAGTT GTTGAGCGGT GAGCTTGTGG AGGTCGACTT TGTCGGTGGC AGTCGCTATA CCTTTACTCC CCAATTAGTG TCGACCCTTG AGCGCCCCTT GGGCCGCGCT GGCAAACTCT TTACCGAATT AATCCTAGAG GAATTTGCTA AAGCAGGGCA GTTTAATGGG GTGGGATTAG GTTAA
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Protein sequence | MRIDIDAFNV LQVLVEEGSF AKAAERLHKA QSAVSYQVKK LEEHLGVQLF SRDQYRAELT SEGRVILAEG QRLLQHLANI EHLASRFSEG WEPKLELVID GALPMEPIMT ALKRMAEHQI PTKIQLNMEF LGGVQHRFER DNADLMLVKD YRTGPYYHPQ PLPAITSVLV TSALHPLAQQ KHISLPELQQ HVELTIEDSS PNKTYRDELQ FGGDKVFYLS GFIMKKNALL KGLGFGWLPD FLVQEELLSG ELVEVDFVGG SRYTFTPQLV STLERPLGRA GKLFTELILE EFAKAGQFNG VGLG
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