| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1388 |
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| Symbol | |
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| ID | 4603640 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 1679815 |
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| End bp | 1680708 |
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| Gene Length | 894 bp |
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| Protein Length | 297 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 639780738 |
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| Product | LysR family transcriptional regulator |
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| Protein accession | YP_927265 |
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| Protein GI | 119774525 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.837907 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0605197 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAAACA CACTGGATCT GGACGGGCTA AGAGCTCTGG ATGCAATTGA TAAAAAAGGA
AGTTTTGCTG CAGCTGCCGA ATCGCTTCAT AAGGTGCCTT CGGCCCTCAC CTACACAATT
CAAAAGCTGG AACAGGAATT TGGCACCCCT TTGTTCGACA GGTCAAAACA AAGGGCCAGA
TTAACGGCCG CGGGCAGACT GGTGCTTGAG CAAGGGCGGG AAATTTTGCA ATCCACCCAG
CGCCTCGCCG ATGCAGTTGC CGCGCTGGAG TCAGGTTGGG AGCGAGAGCT GCGCATCGCA
AGGGACACGG CCATGCCGCC GGGCCCACTG CTGGAGGCAT TAACCGCGTT TCTGGCCCTG
TCGGTACCAG TGGACATCAG CCTTGCGGAA GAATCGCTCG GTGGCGGCTG GGATGCGCTG
CACAGCCGCC GTGCCGATTT GGTGATTGGC GCCAACGGCG ACCTGCCTCG GGGGCTATTT
GAAACCCATT GCATTGGTCA GCTCGAGTTT GTGTTTGCCC TGGCGCCCTT TCATCCGCTG
GCAGAGGCTG AGGGCGTGCT GCAGCTGGAA CAGCTAATGC CCTTCCCTTC GGTGGTGGTG
TCTGACAGCT CGCAGCTGTT ACCGGCCAGG AGCAGCGGCC TTTTCAGCAG TCGCCAGACC
CTGAGAGTCG CGTCAATGGA AGCAAAAATT GAATTGCAGT GCCGCGGACT GGGCACCGGC
TTTATTCCGC GCCATCTGGC GGCACCGCTT ATTGCCAGCG ACGCGCTGGT GGAAAAAGCC
TGCGCCCTGC CGAGGCCAAG CCAGCCGGTG TTTCTGGCCT GGCATAAAGA GCATCAGGGC
AAGGCATTAG CCTGGTTTGT GGCACATTTA TGTAAGGCCG ATTGGGGTAT ATAA
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| Protein sequence | MANTLDLDGL RALDAIDKKG SFAAAAESLH KVPSALTYTI QKLEQEFGTP LFDRSKQRAR
LTAAGRLVLE QGREILQSTQ RLADAVAALE SGWERELRIA RDTAMPPGPL LEALTAFLAL
SVPVDISLAE ESLGGGWDAL HSRRADLVIG ANGDLPRGLF ETHCIGQLEF VFALAPFHPL
AEAEGVLQLE QLMPFPSVVV SDSSQLLPAR SSGLFSSRQT LRVASMEAKI ELQCRGLGTG
FIPRHLAAPL IASDALVEKA CALPRPSQPV FLAWHKEHQG KALAWFVAHL CKADWGI
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