| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_1672 |
|---|
| Symbol | |
|---|
| ID | 5079330 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella putrefaciens CN-32 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009438 |
|---|
| Strand | + |
|---|
| Start bp | 1904923 |
|---|
| End bp | 1905837 |
|---|
| Gene Length | 915 bp |
|---|
| Protein Length | 304 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640498821 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_001183196 |
|---|
| Protein GI | 146292772 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.551623 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGCATCG ATATTGATGC TTTTAATGTG CTGCAAGTGC TGGTGGAAGA GGGCAGTTTT
GCCAAGGCGG CGGAGCGGTT ACACAAGGCG CAATCGGCGG TGAGTTATCA AGTTAAAAAG
TTGGAAGAGC ACTTAGGTGT ACCGCTTTTT AGCCGTGAAC AATATCGTGC TGAGCTGACG
CAAGAGGGCC GTGTGATTTT AGCCGAGGGG CAAAGATTAC TACAACACCT TGCAAACATT
GAACATCTTG CCAGTCGTTT CAGCGAAGGT TGGGAGCCAA AGCTAGAGCT CGTGATAGAC
GGTGCCTTAC CGATGGAACC AATTATGACG GCTTTAAAAC GCATGGCTGA ACATCAGATC
CCCACTAAAA TTCAGCTTAA TATGGAATTT TTAGGTGGCG TACAACACAG ATTCGAACGT
GATAATGCCG ACTTGATGTT AGTGAAAGAT TATCGCACTG GCCCCTATTA TCATCCGCAG
CCTCTGCCAG CCATCACTAG CATATTAGTG GCAAGTGCTT CGCATCCTTT AGCTGTTATT
CGTAAAATTA GTTTGTCTGA GCTGCAGCAG CATGTGGAAT TGACTATCGA AGACTCTTCA
CCCAATAAAA GTTATCGTGA TGAACTACAA TTTGGCGGCG ATAAAGTGTT TTACCTTTCA
GGTTTCATCA TGAAAAAGAA CGCCTTGTTA AAAGGCTTAG GTTTTGGCTG GTTGCCGGAC
TTTTTAGCGC AAGAAGAACT GGCTAAGGGT GAGTTAGTTG AAATCGACTT TGTCGGTGGC
AGTCGTTTTA CGTTTATCCC GCAACTTGTC TCGACCTTAG AACGTCCATT AGGCCGAGCG
GGACAACTCT TTACTAAATT GATTTTAGAG GAGTTTGCTA AAGCAGAGCA GTTTAATGGC
GTCGGTTTGG GATGA
|
|---|
| Protein sequence | MRIDIDAFNV LQVLVEEGSF AKAAERLHKA QSAVSYQVKK LEEHLGVPLF SREQYRAELT
QEGRVILAEG QRLLQHLANI EHLASRFSEG WEPKLELVID GALPMEPIMT ALKRMAEHQI
PTKIQLNMEF LGGVQHRFER DNADLMLVKD YRTGPYYHPQ PLPAITSILV ASASHPLAVI
RKISLSELQQ HVELTIEDSS PNKSYRDELQ FGGDKVFYLS GFIMKKNALL KGLGFGWLPD
FLAQEELAKG ELVEIDFVGG SRFTFIPQLV STLERPLGRA GQLFTKLILE EFAKAEQFNG
VGLG
|
|---|
| |