| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2686 |
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| Symbol | |
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| ID | 5611833 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3242185 |
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| End bp | 3243078 |
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| Gene Length | 894 bp |
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| Protein Length | 297 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640933605 |
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| Product | LysR family transcriptional regulator |
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| Protein accession | YP_001474421 |
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| Protein GI | 157375821 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.524728 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGGGTCG ATGTGGATGC ATTTAAATTG CTGGAGGTGT TGGTCGAAGA GGGAAGCTTT
TCAAAGGCTG CAGAGCGATT GCATAAGGCT CAATCTGCGG TGAGTTATCA GGTAAAAAAA
CTTGAACAGC ACTTAGGTGT AAACCTATTT TGTCGCGATC AGTACCGGGC AGAATTAACA
CCTGAGGGGA AAGTCATCCT TGCCGAGGGG CAAAAGTTAC TGCAAAACCT CGCAAATATT
GAACATTTAG CAAGCCGATT TAGTGAGGGA TGGGAAGCTA AACTTGAATT GGTTGTTGAT
GGTGCGCTCC CAATGGAGCC GATAATGAAG GCCCTGAAAC GAATGGCATC TCAACAGGTT
CCAACCAAGA TCCAGCTAAA TATGGAGTTT TTAGGTGGCG TTCAGGCCAG GTTTGAGCGA
GACAATGCCG ACCTTATGTT GGTCAAAGAC TACAGAACCG GGCCTAATTA CCGTCCTCAA
CCACTTCCGG ATATTAAGAG TGTATTAGTG GTCAGCAGCG ATCATCCACT CGCGGGCGAA
AAAAGCGTGT CACTGTTCGA TCTGCAACGA TATGTCGAGC TGACGATTGA AGATTCATCA
CCCGAGATCA ATTATCGAGA TGACCTTCAG TTTGGTGGTG ATAAAGTGTT CTACCTTTCT
GGCTTTATCA TGAAAAAAAA TGCACTGGAG ATGGGGCTGG GATTCGGTTG GATGCCTGAT
TTTCTAATTC ATGAAGAGTT GAATCGCGGA GACTTGGTTG AGGTCGACTT TCAAGGAGGT
AGCCGATATA GCTTTACGCC GAAGTTAGTA TCGACGATGG AACGCCCACT GGGTAAGGCT
GGTCGGCTTT TTACAGACTT AATTCTCGAA GAGTTCGATA TCGCAAATTT CTAA
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| Protein sequence | MRVDVDAFKL LEVLVEEGSF SKAAERLHKA QSAVSYQVKK LEQHLGVNLF CRDQYRAELT
PEGKVILAEG QKLLQNLANI EHLASRFSEG WEAKLELVVD GALPMEPIMK ALKRMASQQV
PTKIQLNMEF LGGVQARFER DNADLMLVKD YRTGPNYRPQ PLPDIKSVLV VSSDHPLAGE
KSVSLFDLQR YVELTIEDSS PEINYRDDLQ FGGDKVFYLS GFIMKKNALE MGLGFGWMPD
FLIHEELNRG DLVEVDFQGG SRYSFTPKLV STMERPLGKA GRLFTDLILE EFDIANF
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