| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1776 |
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| Symbol | |
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| ID | 5610699 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2135947 |
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| End bp | 2136798 |
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| Gene Length | 852 bp |
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| Protein Length | 283 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640932646 |
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| Product | LysR family transcriptional regulator |
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| Protein accession | YP_001473515 |
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| Protein GI | 157374915 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTAAATT TAGAACATCT ACAGGTTATC GATAGCATCT GTGCAGAGGG CAGTTTTCAG
AAGGCCAGCG AAAAATTGCA CAAGGTACGT TCGGCTGTCT CCTATTCGGT AAAGCAGGTC
GAATCTTATT ACGACATTCA GATCTTCAAT CGAGAAACCT ACCGGCCAGA ACTCACGGCA
GACGGTAGAC TGCTCATAGT ACAAATTCGT CACCTGTTAA AGCAGGCGTC TGAATTTGAG
ACTTTTATCA ATGAGATAAA GGGAGAGAGT GAGACAGAGT TGAGGCTTGG AGTAAGCTCC
ACTTTTCCGT TAGATAAAAT CACCAGACTA CTCATCGAGC TAAAGCAGGA GTTCCCCAAG
ACGACAATTC ATCTGGAGAT CGAGGTCGCC TCCGGCGAGA GAATGTTGCT CGATGGGAAG
GTAGATATTG CCATCTATGG TAGCCCCTTT AAAAACAAGG CTATAGATTA CAAGTTGATC
GACACCATGA ATGTTCCGCT GGTGATCTCC AAAAACTTGC CTTTAGTGGA TATAAACAGA
GTCAGTGAAG CCGAGCTCGC CGCCTACCCT CAAGTGATAA TAAAATCGAC GGACAGTAAG
TCTCCGGATA CCGGCATACT CGATGAGGCG CTGAAATGGT ATGTGACCGA TCTCCATACC
AAGAAAACCT TAATCACTCA AGGGCTAGGT TGGGGAAGAT TGCCACAACA CCTGGTCGAA
AAAGAGATAG AGAATAACGA GTTAATCAGC TTAGATACCT TGGGGGAATT CGAACTCCCT
ATCTATATCA CCAAGCTTAA AAACAAAGCC TTAGGTCCGG TGGCTCTTAA GATCTGGAAC
TATTTTAAAT AG
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| Protein sequence | MVNLEHLQVI DSICAEGSFQ KASEKLHKVR SAVSYSVKQV ESYYDIQIFN RETYRPELTA
DGRLLIVQIR HLLKQASEFE TFINEIKGES ETELRLGVSS TFPLDKITRL LIELKQEFPK
TTIHLEIEVA SGERMLLDGK VDIAIYGSPF KNKAIDYKLI DTMNVPLVIS KNLPLVDINR
VSEAELAAYP QVIIKSTDSK SPDTGILDEA LKWYVTDLHT KKTLITQGLG WGRLPQHLVE
KEIENNELIS LDTLGEFELP IYITKLKNKA LGPVALKIWN YFK
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