| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_2480 |
|---|
| Symbol | |
|---|
| ID | 4476661 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | - |
|---|
| Start bp | 2965797 |
|---|
| End bp | 2966711 |
|---|
| Gene Length | 915 bp |
|---|
| Protein Length | 304 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 639727078 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_870115 |
|---|
| Protein GI | 117920923 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0120237 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCATCG ATATTGATGC TTTTAATGTG CTGCAAGTGC TGGTGGAAGA GGGCAGTTTT
GCCAAAGCCG CCGAGCGTTT ACACAAGGCG CAATCGGCGG TCAGCTATCA GGTCAAAAAG
CTGGAAGAAC ATTTAGGTGT GCAACTTTTT AGTCGGGATC AATACCGCGC CGAGTTGACG
AGTGAAGGGC GGGTGATCTT GGCCGAGGGG CAAAGACTGT TACAACACCT TGCCAATATT
GAACATCTTG CCAGTCGTTT CAGTGAAGGT TGGGAGCCTA AGCTTGAGTT AGTGATCGAT
GGCGCCTTGC CGATGGAGCC GATTATGACG GCACTTAAAC GGATGGCAGA GCATCAAATT
CCGACAAAAA TTCAGCTCAA TATGGAGTTT TTGGGTGGTG TGCAGCACAG ATTCGAGCGT
GACAATGCAG ATCTGATGTT GGTTAAAGAC TACCGCACAG GCCCCTATTA TCACCCACAG
CCACTCCCTG CGATAACCAG TGTACTGGTG ACGAGTGCTT TACATCCCTT AGCTCAACAA
AAACACATCA GTTTGCCCGA GTTACAGCAA CATGTTGAGC TGACCATCGA AGATTCCTCC
CCCAATAAGA CTTATCGAGA TGAGCTGCAA TTTGGTGGCG ATAAAGTGTT CTATCTTTCT
GGTTTTATTA TGAAAAAGAA CGCGTTATTA AAAGGGCTTG GTTTTGGTTG GTTGCCTGAT
TTTCTGGTGC AGGAGGAGTT ATTGAGCGGT GAGCTTGTGG AGGTCGACTT TGTCGGTGGC
AGTCGCTATA CCTTTACTCC TCAGTTAGTG TCGACCCTAG AGCGCCCCTT GGGCCGTGCT
GGCAAACTCT TTACCGAATT AATCCTAGAG GAATTTGCTA AAGCAGGGCA GTTTAATGGG
GTTGGCTTAG GTTAA
|
|---|
| Protein sequence | MRIDIDAFNV LQVLVEEGSF AKAAERLHKA QSAVSYQVKK LEEHLGVQLF SRDQYRAELT
SEGRVILAEG QRLLQHLANI EHLASRFSEG WEPKLELVID GALPMEPIMT ALKRMAEHQI
PTKIQLNMEF LGGVQHRFER DNADLMLVKD YRTGPYYHPQ PLPAITSVLV TSALHPLAQQ
KHISLPELQQ HVELTIEDSS PNKTYRDELQ FGGDKVFYLS GFIMKKNALL KGLGFGWLPD
FLVQEELLSG ELVEVDFVGG SRYTFTPQLV STLERPLGRA GKLFTELILE EFAKAGQFNG
VGLG
|
|---|
| |