More than 300 homologs were found in PanDaTox collection
for query gene Rfer_0782 on replicon NC_007908
Organism: Rhodoferax ferrireducens T118



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_007908  Rfer_0782  two component LuxR family transcriptional regulator  100 
 
 		 248 aa  498  1e-140  Rhodoferax ferrireducens T118  Bacteria  normal  1  n/a   
 
 
-
 
NC_012791  Vapar_1531  two component transcriptional regulator, LuxR family  45.29 
 
 		 229 aa  177  2e-43  Variovorax paradoxus S110  Bacteria  normal  1  n/a   
 
 
-
 
NC_008009  Acid345_0972  two component LuxR family transcriptional regulator  35.45 
 
 		 227 aa  117  1.9999999999999998e-25  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.299836  normal  0.0302219 
 
 
-
 
NC_014212  Mesil_2510  two component transcriptional regulator, LuxR family  33.64 
 
 		 217 aa  105  9e-22  Meiothermus silvanus DSM 9946  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011884  Cyan7425_1401  two component transcriptional regulator, LuxR family  35.19 
 
 		 217 aa  104  1e-21  Cyanothece sp. PCC 7425  Bacteria  normal  1  normal  0.482316 
 
 
-
 
NC_009675  Anae109_3355  two component LuxR family transcriptional regulator  40.62 
 
 		 232 aa  104  1e-21  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013947  Snas_3745  two component transcriptional regulator, LuxR family  32.16 
 
 		 235 aa  101  1e-20  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.627677  normal  0.255424 
 
 
-
 
NC_013093  Amir_5375  two component transcriptional regulator, LuxR family  37.14 
 
 		 218 aa  101  1e-20  Actinosynnema mirum DSM 43827  Bacteria  normal  1  n/a   
 
 
-
 
NC_013510  Tcur_1651  two component transcriptional regulator, LuxR family  35.21 
 
 		 218 aa  95.9  5e-19  Thermomonospora curvata DSM 43183  Bacteria  hitchhiker  0.000163278  n/a   
 
 
-
 
NC_007413  Ava_2028  two component LuxR family transcriptional regulator  29.82 
 
 		 219 aa  95.5  8e-19  Anabaena variabilis ATCC 29413  Bacteria  normal  0.515359  normal  1 
 
 
-
 
NC_007644  Moth_0975  two component LuxR family transcriptional regulator  29.02 
 
 		 222 aa  95.1  9e-19  Moorella thermoacetica ATCC 39073  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011831  Cagg_3668  two component transcriptional regulator, LuxR family  34.4 
 
 		 213 aa  95.1  1e-18  Chloroflexus aggregans DSM 9485  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011666  Msil_2019  two component transcriptional regulator, LuxR family  31.82 
 
 		 223 aa  94.7  1e-18  Methylocella silvestris BL2  Bacteria  n/a    normal  1 
 
 
-
 
NC_010002  Daci_1106  two component LuxR family transcriptional regulator  31.96 
 
 		 223 aa  94.4  2e-18  Delftia acidovorans SPH-1  Bacteria  normal  0.584765  normal  1 
 
 
-
 
NC_013946  Mrub_0806  two component LuxR family transcriptional regulator  30.36 
 
 		 216 aa  94  2e-18  Meiothermus ruber DSM 1279  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009921  Franean1_5512  two component LuxR family transcriptional regulator  30.17 
 
 		 250 aa  93.6  3e-18  Frankia sp. EAN1pec  Bacteria  normal  1  normal  0.631776 
 
 
-
 
NC_013385  Adeg_1034  two component transcriptional regulator, LuxR family  31.08 
 
 		 213 aa  92  7e-18  Ammonifex degensii KC4  Bacteria  normal  1  n/a   
 
 
-
 
NC_007509  Bcep18194_C7667  two component LuxR family transcriptional regulator  32.76 
 
 		 209 aa  91.3  1e-17  Burkholderia sp. 383  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013595  Sros_3331  response regulator receiver protein  33.47 
 
 		 227 aa  91.3  1e-17  Streptosporangium roseum DSM 43021  Bacteria  normal  0.832029  normal  0.250763 
 
 
-
 
NC_010505  Mrad2831_3042  two component LuxR family transcriptional regulator  31.05 
 
 		 222 aa  91.7  1e-17  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  1  normal  0.280021 
 
 
-
 
NC_008726  Mvan_1358  two component LuxR family transcriptional regulator  32.08 
 
 		 220 aa  91.3  1e-17  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.110964  normal  1 
 
 
-
 
NC_010725  Mpop_3747  two component transcriptional regulator, LuxR family  31.53 
 
 		 221 aa  90.5  2e-17  Methylobacterium populi BJ001  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013159  Svir_00210  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  33.03 
 
 		 221 aa  90.5  2e-17  Saccharomonospora viridis DSM 43017  Bacteria  normal  1  normal  0.133182 
 
 
-
 
NC_007958  RPD_3789  response regulator receiver  30.8 
 
 		 228 aa  90.5  2e-17  Rhodopseudomonas palustris BisB5  Bacteria  normal  1  normal  0.0916709 
 
 
-
 
NC_008044  TM1040_0876  two component LuxR family transcriptional regulator  31.88 
 
 		 233 aa  90.5  2e-17  Ruegeria sp. TM1040  Bacteria  normal  0.481499  normal  0.345787 
 
 
-
 
NC_009664  Krad_1998  two component transcriptional regulator, LuxR family  35.09 
 
 		 225 aa  90.5  2e-17  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.12496  normal  1 
 
 
-
 
NC_010524  Lcho_0242  two component LuxR family transcriptional regulator  31.36 
 
 		 211 aa  90.5  2e-17  Leptothrix cholodnii SP-6  Bacteria  n/a    decreased coverage  0.000159114 
 
 
-
 
NC_007348  Reut_B5066  LuxR response regulator receiver  31.7 
 
 		 217 aa  90.1  3e-17  Ralstonia eutropha JMP134  Bacteria  normal  0.822528  n/a   
 
 
-
 
NC_008009  Acid345_0268  two component LuxR family transcriptional regulator  33.8 
 
 		 217 aa  90.1  3e-17  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.289536  normal  1 
 
 
-
 
NC_013739  Cwoe_3988  two component transcriptional regulator, LuxR family  30.6 
 
 		 228 aa  89.7  3e-17  Conexibacter woesei DSM 14684  Bacteria  normal  0.0354189  normal  0.736565 
 
 
-
 
NC_009338  Mflv_5014  two component LuxR family transcriptional regulator  30.19 
 
 		 209 aa  90.1  3e-17  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.103708  normal  0.29037 
 
 
-
 
NC_014165  Tbis_0228  LuxR family two component transcriptional regulator  33.33 
 
 		 206 aa  89.7  4e-17  Thermobispora bispora DSM 43833  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012803  Mlut_21900  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  34.8 
 
 		 230 aa  89.4  5e-17  Micrococcus luteus NCTC 2665  Bacteria  hitchhiker  0.00486265  n/a   
 
 
-
 
NC_007778  RPB_4035  two component LuxR family transcriptional regulator  31.11 
 
 		 228 aa  89.4  6e-17  Rhodopseudomonas palustris HaA2  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009523  RoseRS_3278  two component LuxR family transcriptional regulator  31.92 
 
 		 214 aa  88.6  9e-17  Roseiflexus sp. RS-1  Bacteria  normal  1  normal  0.749326 
 
 
-
 
NC_012857  Rpic12D_3598  two component transcriptional regulator, LuxR family  31.7 
 
 		 218 aa  88.2  1e-16  Ralstonia pickettii 12D  Bacteria  normal  0.329097  normal  0.731815 
 
 
-
 
NC_013947  Snas_5788  two component transcriptional regulator, LuxR family  31.39 
 
 		 214 aa  88.2  1e-16  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  1  normal  0.785726 
 
 
-
 
NC_007777  Francci3_1039  two component LuxR family transcriptional regulator  29.07 
 
 		 238 aa  88.6  1e-16  Frankia sp. CcI3  Bacteria  normal  1  normal  0.135118 
 
 
-
 
NC_007925  RPC_3790  two component LuxR family transcriptional regulator  31.42 
 
 		 226 aa  88.6  1e-16  Rhodopseudomonas palustris BisB18  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011004  Rpal_1676  two component transcriptional regulator, LuxR family  30.67 
 
 		 228 aa  88.2  1e-16  Rhodopseudomonas palustris TIE-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_010678  Rpic_4675  two component transcriptional regulator, LuxR family  31.7 
 
 		 218 aa  88.2  1e-16  Ralstonia pickettii 12J  Bacteria  normal  0.760252  normal  1 
 
 
-
 
NC_003296  RSp0980  nitrate/nitrite response regulator transcription regulator protein  30.94 
 
 		 222 aa  87.4  2e-16  Ralstonia solanacearum GMI1000  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013093  Amir_6525  two component transcriptional regulator, LuxR family  31.28 
 
 		 216 aa  87.4  2e-16  Actinosynnema mirum DSM 43827  Bacteria  normal  1  n/a   
 
 
-
 
NC_007614  Nmul_A1279  response regulator receiver domain-containing protein  35.66 
 
 		 179 aa  87  2e-16  Nitrosospira multiformis ATCC 25196  Bacteria  normal  0.613152  n/a   
 
 
-
 
NC_013947  Snas_1903  two component transcriptional regulator, LuxR family  32.63 
 
 		 225 aa  87.8  2e-16  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.202425  normal  0.182857 
 
 
-
 
NC_011071  Smal_1888  two component transcriptional regulator, LuxR family  30.91 
 
 		 212 aa  87.4  2e-16  Stenotrophomonas maltophilia R551-3  Bacteria  normal  1  normal  0.265772 
 
 
-
 
NC_013946  Mrub_1071  two component LuxR family transcriptional regulator  32.69 
 
 		 209 aa  87.4  2e-16  Meiothermus ruber DSM 1279  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009972  Haur_4648  two component LuxR family transcriptional regulator  32.89 
 
 		 219 aa  86.7  3e-16  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  1  n/a   
 
 
-
 
NC_009767  Rcas_3262  two component LuxR family transcriptional regulator  32.29 
 
 		 222 aa  87  3e-16  Roseiflexus castenholzii DSM 13941  Bacteria  normal  1  normal  0.764026 
 
 
-
 
NC_013131  Caci_5202  two component transcriptional regulator, LuxR family  33.48 
 
 		 225 aa  87  3e-16  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.677169  normal  0.920773 
 
 
-
 
NC_008699  Noca_2635  response regulator receiver  33.48 
 
 		 207 aa  86.7  3e-16  Nocardioides sp. JS614  Bacteria  normal  1  n/a   
 
 
-
 
NC_009523  RoseRS_1984  two component LuxR family transcriptional regulator  32 
 
 		 220 aa  86.7  3e-16  Roseiflexus sp. RS-1  Bacteria  normal  0.178457  normal  0.123783 
 
 
-
 
NC_013131  Caci_8412  two component transcriptional regulator, LuxR family  31.49 
 
 		 239 aa  86.3  4e-16  Catenulispora acidiphila DSM 44928  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013124  Afer_0180  two component transcriptional regulator, LuxR family  32.56 
 
 		 216 aa  86.7  4e-16  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  0.245465  n/a   
 
 
-
 
NC_013530  Xcel_0190  two component transcriptional regulator, LuxR family  31.58 
 
 		 219 aa  86.7  4e-16  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.146862  n/a   
 
 
-
 
NC_013757  Gobs_3437  two component transcriptional regulator, LuxR family  31.72 
 
 		 248 aa  86.3  4e-16  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.39912  n/a   
 
 
-
 
NC_013757  Gobs_4064  two component transcriptional regulator, LuxR family  32.08 
 
 		 217 aa  86.3  4e-16  Geodermatophilus obscurus DSM 43160  Bacteria  normal  1  n/a   
 
 
-
 
NC_014212  Mesil_0065  two component transcriptional regulator, LuxR family  31.67 
 
 		 204 aa  86.3  5e-16  Meiothermus silvanus DSM 9946  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007908  Rfer_1539  two component LuxR family transcriptional regulator  33.01 
 
 		 230 aa  85.9  5e-16  Rhodoferax ferrireducens T118  Bacteria  normal  1  n/a   
 
 
-
 
NC_009656  PSPA7_1229  transcriptional regulator NarL  31.22 
 
 		 219 aa  85.9  5e-16  Pseudomonas aeruginosa PA7  Bacteria  normal  1  n/a   
 
 
-
 
NC_013510  Tcur_1532  two component transcriptional regulator, LuxR family  33.94 
 
 		 220 aa  85.9  5e-16  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0114765  n/a   
 
 
-
 
NC_009441  Fjoh_4664  two component LuxR family transcriptional regulator  25.45 
 
 		 219 aa  86.3  5e-16  Flavobacterium johnsoniae UW101  Bacteria  normal  1  n/a   
 
 
-
 
NC_009921  Franean1_2449  two component LuxR family transcriptional regulator  31.63 
 
 		 211 aa  85.9  6e-16  Frankia sp. EAN1pec  Bacteria  normal  1  normal  0.265588 
 
 
-
 
NC_011138  MADE_03853  transcriptional regulator NarL  32.44 
 
 		 217 aa  85.9  6e-16  Alteromonas macleodii 'Deep ecotype'  Bacteria  unclonable  0.0000020037  n/a   
 
 
-
 
NC_013595  Sros_0553  response regulator receiver protein  34.53 
 
 		 213 aa  85.9  6e-16  Streptosporangium roseum DSM 43021  Bacteria  normal  0.82888  normal  1 
 
 
-
 
NC_013595  Sros_4577  response regulator receiver protein  30.36 
 
 		 223 aa  85.9  6e-16  Streptosporangium roseum DSM 43021  Bacteria  normal  1  normal  0.172592 
 
 
-
 
NC_013093  Amir_4433  two component transcriptional regulator, LuxR family  30.63 
 
 		 215 aa  85.9  6e-16  Actinosynnema mirum DSM 43827  Bacteria  normal  1  n/a   
 
 
-
 
NC_013205  Aaci_0516  two component transcriptional regulator, LuxR family  29.65 
 
 		 231 aa  85.5  6e-16  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  1  n/a   
 
 
-
 
NC_013947  Snas_4479  two component transcriptional regulator, LuxR family  31.11 
 
 		 224 aa  85.9  6e-16  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.518456  normal  0.598935 
 
 
-
 
NC_007777  Francci3_2258  two component LuxR family transcriptional regulator  31.48 
 
 		 224 aa  85.5  7e-16  Frankia sp. CcI3  Bacteria  normal  0.124896  normal  0.0124728 
 
 
-
 
NC_009524  PsycPRwf_1429  two component LuxR family transcriptional regulator  27.93 
 
 		 211 aa  85.5  7e-16  Psychrobacter sp. PRwf-1  Bacteria  normal  1  normal  0.85494 
 
 
-
 
NC_002977  MCA0777  LuxR family DNA binding response regulator  32.59 
 
 		 215 aa  85.1  8e-16  Methylococcus capsulatus str. Bath  Bacteria  normal  0.891731  n/a   
 
 
-
 
NC_008025  Dgeo_0315  two component LuxR family transcriptional regulator  32.29 
 
 		 214 aa  85.5  8e-16  Deinococcus geothermalis DSM 11300  Bacteria  normal  1  hitchhiker  0.0084678 
 
 
-
 
NC_013525  Tter_0300  two component transcriptional regulator, LuxR family  30 
 
 		 224 aa  85.1  9e-16  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_011145  AnaeK_1881  two component transcriptional regulator, LuxR family  32 
 
 		 218 aa  85.1  9e-16  Anaeromyxobacter sp. K  Bacteria  normal  0.0160211  n/a   
 
 
-
 
NC_011891  A2cp1_1966  two component transcriptional regulator, LuxR family  32 
 
 		 218 aa  85.1  9e-16  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_007947  Mfla_0815  two component LuxR family transcriptional regulator  28.18 
 
 		 213 aa  84.7  0.000000000000001  Methylobacillus flagellatus KT  Bacteria  hitchhiker  0.00000180305  normal  1 
 
 
-
 
NC_008025  Dgeo_0555  two component LuxR family transcriptional regulator  30.97 
 
 		 228 aa  84.7  0.000000000000001  Deinococcus geothermalis DSM 11300  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012669  Bcav_3541  two component transcriptional regulator, LuxR family  32.69 
 
 		 211 aa  85.1  0.000000000000001  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.485125  normal  0.513005 
 
 
-
 
NC_008527  LACR_0967  DNA-binding response regulator  29.39 
 
 		 209 aa  84.3  0.000000000000001  Lactococcus lactis subsp. cremoris SK11  Bacteria  normal  0.598364  n/a   
 
 
-
 
NC_008541  Arth_2136  two component LuxR family transcriptional regulator  29.44 
 
 		 254 aa  84.7  0.000000000000001  Arthrobacter sp. FB24  Bacteria  normal  0.0553154  n/a   
 
 
-
 
NC_008740  Maqu_2218  two component LuxR family transcriptional regulator  29.33 
 
 		 221 aa  84.7  0.000000000000001  Marinobacter aquaeolei VT8  Bacteria  normal  1  n/a   
 
 
-
 
NC_014210  Ndas_1125  two component transcriptional regulator, LuxR family  34.39 
 
 		 229 aa  84.7  0.000000000000001  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  1  normal  0.306134 
 
 
-
 
NC_013595  Sros_0609  response regulator receiver protein  30.41 
 
 		 218 aa  85.1  0.000000000000001  Streptosporangium roseum DSM 43021  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011899  Hore_21820  two component transcriptional regulator, LuxR family  27.88 
 
 		 211 aa  85.1  0.000000000000001  Halothermothrix orenii H 168  Bacteria  normal  1  n/a   
 
 
-
 
NC_013739  Cwoe_5656  two component transcriptional regulator, LuxR family  33.95 
 
 		 222 aa  84  0.000000000000002  Conexibacter woesei DSM 14684  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009921  Franean1_1971  two component LuxR family transcriptional regulator  31.82 
 
 		 216 aa  84  0.000000000000002  Frankia sp. EAN1pec  Bacteria  normal  0.356635  normal  0.773651 
 
 
-
 
NC_007760  Adeh_1997  two component LuxR family transcriptional regulator  32 
 
 		 218 aa  84.3  0.000000000000002  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  1  n/a   
 
 
-
 
NC_014158  Tpau_1874  two component transcriptional regulator, LuxR family  29.86 
 
 		 213 aa  84  0.000000000000002  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.635222  n/a   
 
 
-
 
NC_008463  PA14_13730  transcriptional regulator NarL  30.77 
 
 		 219 aa  84.3  0.000000000000002  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  1  normal  0.817999 
 
 
-
 
NC_013131  Caci_7589  two component transcriptional regulator, LuxR family  28.82 
 
 		 225 aa  83.6  0.000000000000003  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.438424  normal  0.37363 
 
 
-
 
NC_010001  Cphy_0080  two component LuxR family transcriptional regulator  28.37 
 
 		 212 aa  83.6  0.000000000000003  Clostridium phytofermentans ISDg  Bacteria  normal  1  n/a   
 
 
-
 
NC_007963  Csal_0866  two component LuxR family transcriptional regulator  32.38 
 
 		 220 aa  83.2  0.000000000000003  Chromohalobacter salexigens DSM 3043  Bacteria  normal  1  n/a   
 
 
-
 
NC_008148  Rxyl_2629  two component LuxR family transcriptional regulator  32.86 
 
 		 232 aa  83.2  0.000000000000003  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.312922  n/a   
 
 
-
 
NC_010505  Mrad2831_0320  two component LuxR family transcriptional regulator  32.43 
 
 		 221 aa  83.6  0.000000000000003  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.15389  normal  1 
 
 
-
 
NC_009783  VIBHAR_02748  response regulator  28.38 
 
 		 214 aa  83.2  0.000000000000004  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_014248  Aazo_0236  LuxR family two component transcriptional regulator  30.29 
 
 		 218 aa  83.2  0.000000000000004  'Nostoc azollae' 0708  Bacteria  normal  1  n/a   
 
 
-
 
NC_007651  BTH_I1849  DNA-binding response regulator NarL  31.33 
 
 		 233 aa  82.8  0.000000000000004  Burkholderia thailandensis E264  Bacteria  normal  1  n/a   
 
 
-
 
NC_009074  BURPS668_2630  nitrate/nitrite response regulator protein NarL  30.47 
 
 		 233 aa  83.2  0.000000000000004  Burkholderia pseudomallei 668  Bacteria  normal  0.14617  n/a   
 
 
-
 
NC_009076  BURPS1106A_2686  nitrate/nitrite response regulator protein NarL  30.47 
 
 		 233 aa  83.2  0.000000000000004  Burkholderia pseudomallei 1106a  Bacteria  normal  1  n/a   
 
 
-
 
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