More than 300 homologs were found in PanDaTox collection
for query gene PputGB1_2274 on replicon NC_010322
Organism: Pseudomonas putida GB-1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_002947  PP_3638  acyl-CoA dehydrogenase, putative  94.35 
 
 
354 aa  639    Pseudomonas putida KT2440  Bacteria  normal  0.0587866  normal  0.442088 
 
 
-
 
NC_009512  Pput_2095  Acyl-CoA dehydrogenase-like protein  94.92 
 
 
354 aa  644    Pseudomonas putida F1  Bacteria  normal  normal  0.528653 
 
 
-
 
NC_010322  PputGB1_2274  acyl-CoA dehydrogenase  100 
 
 
354 aa  704    Pseudomonas putida GB-1  Bacteria  normal  0.921595  normal  0.572718 
 
 
-
 
NC_009656  PSPA7_2929  hypothetical protein  66.86 
 
 
355 aa  436  1e-121  Pseudomonas aeruginosa PA7  Bacteria  normal  0.299925  n/a   
 
 
-
 
NC_008463  PA14_34490  hypothetical protein  65.44 
 
 
355 aa  405  1.0000000000000001e-112  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  hitchhiker  0.0000897326  normal  0.153318 
 
 
-
 
NC_007406  Nwi_0459  hypothetical protein  53.8 
 
 
367 aa  345  6e-94  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal 
 
 
-
 
NC_010512  Bcenmc03_6334  putative acyl-CoA dehydrogenase  51.72 
 
 
371 aa  338  8e-92  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_008062  Bcen_6511  hypothetical protein  51.15 
 
 
371 aa  335  1e-90  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008544  Bcen2424_6745  hypothetical protein  51.15 
 
 
371 aa  335  1e-90  Burkholderia cenocepacia HI2424  Bacteria  normal  0.839762  normal  0.367272 
 
 
-
 
NC_007952  Bxe_B1538  putative acyl-CoA dehydrogenase  51.72 
 
 
367 aa  325  8.000000000000001e-88  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_5825  putative acyl-CoA dehydrogenase  50.43 
 
 
365 aa  303  3.0000000000000004e-81  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.803301 
 
 
-
 
NC_007953  Bxe_C0102  putative acyl-CoA dehydrogenase  53.54 
 
 
367 aa  299  5e-80  Burkholderia xenovorans LB400  Bacteria  normal  0.988493  normal 
 
 
-
 
NC_010002  Daci_3928  acyl-CoA dehydrogenase, putative  50.43 
 
 
366 aa  294  1e-78  Delftia acidovorans SPH-1  Bacteria  normal  0.438549  normal  0.0461862 
 
 
-
 
NC_008532  STER_0700  acyl-CoA dehydrogenase family protein  44.57 
 
 
354 aa  280  3e-74  Streptococcus thermophilus LMD-9  Bacteria  normal  0.564675  n/a   
 
 
-
 
NC_007595  Synpcc7942_B2627  hypothetical protein  43.25 
 
 
353 aa  239  4e-62  Synechococcus elongatus PCC 7942  Bacteria  normal  0.0414836  normal 
 
 
-
 
NC_007520  Tcr_0038  putative acyl-CoA dehydrogenase  28.61 
 
 
360 aa  152  5.9999999999999996e-36  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_011666  Msil_2837  putative acyl-CoA dehydrogenase  32.35 
 
 
375 aa  139  7.999999999999999e-32  Methylocella silvestris BL2  Bacteria  n/a    normal  0.926618 
 
 
-
 
NC_007947  Mfla_2174  putative acyl-CoA dehydrogenase  31.41 
 
 
382 aa  137  4e-31  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_0305  putative acyl-CoA dehydrogenase  30.82 
 
 
376 aa  127  2.0000000000000002e-28  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.1367 
 
 
-
 
NC_013889  TK90_0970  acyl-CoA dehydrogenase domain protein  31.13 
 
 
379 aa  125  2e-27  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.276335 
 
 
-
 
NC_013510  Tcur_1452  acyl-CoA dehydrogenase  30.17 
 
 
350 aa  123  5e-27  Thermomonospora curvata DSM 43183  Bacteria  hitchhiker  0.00428618  n/a   
 
 
-
 
NC_013422  Hneap_2211  acyl-CoA dehydrogenase domain protein  27.41 
 
 
378 aa  118  9.999999999999999e-26  Halothiobacillus neapolitanus c2  Bacteria  normal  n/a   
 
 
-
 
NC_009720  Xaut_2613  putative acyl-CoA dehydrogenase family protein  29.14 
 
 
373 aa  117  3e-25  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.346291 
 
 
-
 
NC_010172  Mext_3484  acyl-CoA dehydrogenase type 2  31.29 
 
 
358 aa  112  7.000000000000001e-24  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_4852  acyl-CoA dehydrogenase-like  28.21 
 
 
395 aa  111  2.0000000000000002e-23  Polaromonas sp. JS666  Bacteria  normal  normal  0.150232 
 
 
-
 
NC_011757  Mchl_3792  Acyl-CoA dehydrogenase type 2 domain  29.71 
 
 
358 aa  111  2.0000000000000002e-23  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.267616 
 
 
-
 
NC_010172  Mext_1150  acyl-CoA dehydrogenase-like protein  29.66 
 
 
397 aa  110  5e-23  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.428628 
 
 
-
 
NC_011757  Mchl_1309  acyl-CoA dehydrogenase domain protein  30.17 
 
 
397 aa  108  1e-22  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_009632  SaurJH1_0165  hypothetical protein  25.79 
 
 
344 aa  107  2e-22  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  n/a   
 
 
-
 
NC_009487  SaurJH9_0160  Acyl-CoA dehydrogenase-like protein  25.79 
 
 
344 aa  107  2e-22  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_5417  putative acyl-CoA dehydrogenase family protein  28.92 
 
 
373 aa  104  2e-21  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_1706  putative acyl-CoA dehydrogenase  31.55 
 
 
375 aa  102  9e-21  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.087432  n/a   
 
 
-
 
NC_010725  Mpop_4667  acyl-CoA dehydrogenase-like protein  29.21 
 
 
396 aa  99.4  8e-20  Methylobacterium populi BJ001  Bacteria  normal  0.0171462  normal 
 
 
-
 
NC_010511  M446_4820  putative acyl-CoA dehydrogenase  31.01 
 
 
375 aa  97.1  4e-19  Methylobacterium sp. 4-46  Bacteria  normal  hitchhiker  0.0078002 
 
 
-
 
NC_008599  CFF8240_0622  acyl-CoA dehydrogenase  27.95 
 
 
354 aa  96.3  7e-19  Campylobacter fetus subsp. fetus 82-40  Bacteria  decreased coverage  0.00205931  n/a   
 
 
-
 
NC_010725  Mpop_3866  Acyl-CoA dehydrogenase type 2 domain  31.48 
 
 
362 aa  94.7  2e-18  Methylobacterium populi BJ001  Bacteria  normal  normal  0.0222771 
 
 
-
 
NC_009952  Dshi_0838  acyl-CoA dehydrogenase domain protein  25.21 
 
 
382 aa  77  0.0000000000005  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal  0.541206 
 
 
-
 
NC_009784  VIBHAR_05480  acyl-CoA dehydrogenase  24.64 
 
 
389 aa  75.5  0.000000000001  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_007348  Reut_B4257  butyryl-CoA dehydrogenase  28.21 
 
 
377 aa  75.9  0.000000000001  Ralstonia eutropha JMP134  Bacteria  normal  0.725306  n/a   
 
 
-
 
NC_006368  lpp1787  hypothetical protein  24.2 
 
 
389 aa  74.7  0.000000000003  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_006369  lpl1788  hypothetical protein  24.35 
 
 
389 aa  73.9  0.000000000003  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_013202  Hmuk_2082  acyl-CoA dehydrogenase domain protein  26.53 
 
 
376 aa  71.6  0.00000000002  Halomicrobium mukohataei DSM 12286  Archaea  normal  normal 
 
 
-
 
NC_012034  Athe_1232  acyl-CoA dehydrogenase domain protein  23.92 
 
 
381 aa  71.6  0.00000000002  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_013757  Gobs_3923  acyl-CoA dehydrogenase domain protein  27.99 
 
 
381 aa  71.2  0.00000000003  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_2136  acyl-CoA dehydrogenase domain-containing protein  23.71 
 
 
380 aa  70.9  0.00000000003  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.281355 
 
 
-
 
NC_013440  Hoch_3775  acyl-CoA dehydrogenase domain protein  27.19 
 
 
386 aa  70.1  0.00000000006  Haliangium ochraceum DSM 14365  Bacteria  normal  0.212433  normal  0.155443 
 
 
-
 
NC_009952  Dshi_1297  acyl-CoA dehydrogenase domain protein  28.16 
 
 
387 aa  69.3  0.00000000008  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.329164  normal  0.246274 
 
 
-
 
NC_008044  TM1040_1559  acyl-CoA dehydrogenase-like  25.71 
 
 
387 aa  69.3  0.0000000001  Ruegeria sp. TM1040  Bacteria  normal  normal  0.456319 
 
 
-
 
NC_010524  Lcho_0727  hypothetical protein  36.03 
 
 
224 aa  68.6  0.0000000001  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.0730349 
 
 
-
 
NC_007951  Bxe_A3574  putative acyl-CoA dehydrogenase  25.56 
 
 
377 aa  68.2  0.0000000002  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_008044  TM1040_0732  isovaleryl-CoA dehydrogenase  25.51 
 
 
387 aa  68.2  0.0000000002  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_008726  Mvan_0906  acyl-CoA dehydrogenase domain-containing protein  31.92 
 
 
380 aa  67.4  0.0000000004  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
BN001303  ANIA_04688  Isovaleryl-coenzyme A dehydrogenase (EC 1.3.99.10) [Source:UniProtKB/TrEMBL;Acc:Q6T5L6]  24.46 
 
 
431 aa  66.6  0.0000000006  Aspergillus nidulans FGSC A4  Eukaryota  normal  0.480161  normal 
 
 
-
 
NC_010338  Caul_1892  acyl-CoA dehydrogenase domain-containing protein  24.38 
 
 
378 aa  66.6  0.0000000007  Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_007802  Jann_1142  isovaleryl-CoA dehydrogenase  28.15 
 
 
386 aa  66.2  0.0000000008  Jannaschia sp. CCS1  Bacteria  normal  0.268805  normal  0.402986 
 
 
-
 
NC_009511  Swit_1598  acyl-CoA dehydrogenase domain-containing protein  27.04 
 
 
383 aa  65.5  0.000000001  Sphingomonas wittichii RW1  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_4308  acyl-CoA dehydrogenase domain-containing protein  28.46 
 
 
380 aa  65.5  0.000000001  Mycobacterium sp. JLS  Bacteria  normal  0.828452  normal 
 
 
-
 
NC_013595  Sros_1015  acyl-CoA dehydrogenase domain-containing protein  25.3 
 
 
381 aa  65.5  0.000000001  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.629454 
 
 
-
 
NC_008740  Maqu_2121  isovaleryl-CoA dehydrogenase  25.7 
 
 
388 aa  65.9  0.000000001  Marinobacter aquaeolei VT8  Bacteria  normal  0.274166  n/a   
 
 
-
 
NC_008146  Mmcs_4078  acyl-CoA dehydrogenase-like protein  28.46 
 
 
380 aa  65.5  0.000000001  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_4154  acyl-CoA dehydrogenase domain-containing protein  28.46 
 
 
380 aa  65.5  0.000000001  Mycobacterium sp. KMS  Bacteria  normal  normal  0.815208 
 
 
-
 
NC_014210  Ndas_4164  acyl-CoA dehydrogenase domain protein  26.67 
 
 
380 aa  65.9  0.000000001  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_008699  Noca_0818  acyl-CoA dehydrogenase domain-containing protein  26.02 
 
 
381 aa  65.5  0.000000001  Nocardioides sp. JS614  Bacteria  normal  0.372759  n/a   
 
 
-
 
NC_008346  Swol_0488  butyryl-CoA dehydrogenase  20.17 
 
 
379 aa  64.7  0.000000002  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  hitchhiker  0.00678793  n/a   
 
 
-
 
NC_007333  Tfu_1281  butyryl-CoA dehydrogenase  24.83 
 
 
387 aa  64.3  0.000000003  Thermobifida fusca YX  Bacteria  normal  0.33384  n/a   
 
 
-
 
NC_009511  Swit_1764  acyl-CoA dehydrogenase domain-containing protein  25.45 
 
 
380 aa  64.3  0.000000003  Sphingomonas wittichii RW1  Bacteria  normal  0.937718  normal 
 
 
-
 
NC_011138  MADE_02412  isovaleryl-CoA dehydrogenase  23.56 
 
 
389 aa  63.9  0.000000004  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.719746  n/a   
 
 
-
 
NC_009719  Plav_2780  acyl-CoA dehydrogenase domain-containing protein  24.47 
 
 
390 aa  63.5  0.000000005  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal  0.0393743 
 
 
-
 
NC_009972  Haur_3567  acyl-CoA dehydrogenase domain-containing protein  25.68 
 
 
382 aa  63.2  0.000000006  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_3243  acyl-CoA dehydrogenase domain-containing protein  28.57 
 
 
399 aa  63.5  0.000000006  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_5850  acyl-CoA dehydrogenase, C-terminal domain protein  29.67 
 
 
380 aa  63.5  0.000000006  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.856697 
 
 
-
 
NC_008146  Mmcs_3181  acyl-CoA dehydrogenase-like protein  28.57 
 
 
399 aa  63.5  0.000000006  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008347  Mmar10_0539  acyl-CoA dehydrogenase domain-containing protein  24.46 
 
 
388 aa  63.2  0.000000006  Maricaulis maris MCS10  Bacteria  normal  0.191308  normal  0.162597 
 
 
-
 
NC_013205  Aaci_2056  acyl-CoA dehydrogenase domain protein  22.44 
 
 
377 aa  63.5  0.000000006  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.232194  n/a   
 
 
-
 
NC_007908  Rfer_0994  acyl-CoA dehydrogenase-like  26.05 
 
 
382 aa  63.2  0.000000007  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_012792  Vapar_5772  acyl-CoA dehydrogenase domain protein  26.09 
 
 
388 aa  62.8  0.000000009  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_009077  Mjls_1336  acyl-CoA dehydrogenase domain-containing protein  25.51 
 
 
388 aa  62.8  0.000000009  Mycobacterium sp. JLS  Bacteria  normal  0.11867  normal 
 
 
-
 
NC_008146  Mmcs_1300  acyl-CoA dehydrogenase-like protein  25.51 
 
 
388 aa  62.8  0.000000009  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_1317  acyl-CoA dehydrogenase domain-containing protein  25.51 
 
 
388 aa  62.8  0.000000009  Mycobacterium sp. KMS  Bacteria  normal  normal  0.247959 
 
 
-
 
NC_009077  Mjls_2992  acyl-CoA dehydrogenase domain-containing protein  26.85 
 
 
415 aa  62.4  0.00000001  Mycobacterium sp. JLS  Bacteria  normal  0.831286  normal  0.0331169 
 
 
-
 
NC_009921  Franean1_3147  acyl-CoA dehydrogenase domain-containing protein  27.38 
 
 
382 aa  62  0.00000001  Frankia sp. EAN1pec  Bacteria  normal  0.880335  normal 
 
 
-
 
NC_012560  Avin_49560  Acyl-CoA dehydrogenase  24.27 
 
 
393 aa  62  0.00000001  Azotobacter vinelandii DJ  Bacteria  normal  0.531636  n/a   
 
 
-
 
NC_010678  Rpic_3973  acyl-CoA dehydrogenase domain protein  25.84 
 
 
377 aa  61.6  0.00000002  Ralstonia pickettii 12J  Bacteria  normal  0.78306  normal  0.788161 
 
 
-
 
NC_011004  Rpal_1804  acyl-CoA dehydrogenase domain protein  23.4 
 
 
390 aa  61.2  0.00000002  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.392184  n/a   
 
 
-
 
NC_008726  Mvan_1719  acyl-CoA dehydrogenase domain-containing protein  25.1 
 
 
389 aa  61.6  0.00000002  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_012857  Rpic12D_4086  acyl-CoA dehydrogenase domain protein  25.84 
 
 
377 aa  61.6  0.00000002  Ralstonia pickettii 12D  Bacteria  normal  0.303595  normal  0.349393 
 
 
-
 
NC_010717  PXO_03805  acyl-CoA dehydrogenase  25.72 
 
 
387 aa  61.6  0.00000002  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_010682  Rpic_2632  acyl-CoA dehydrogenase domain protein  25.49 
 
 
381 aa  61.2  0.00000002  Ralstonia pickettii 12J  Bacteria  normal  0.49444  normal  0.97315 
 
 
-
 
NC_009524  PsycPRwf_1187  acyl-CoA dehydrogenase domain-containing protein  24.62 
 
 
383 aa  61.6  0.00000002  Psychrobacter sp. PRwf-1  Bacteria  normal  normal 
 
 
-
 
NC_009338  Mflv_4743  butyryl-CoA dehydrogenase  24.7 
 
 
417 aa  61.2  0.00000002  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_008700  Sama_1362  isovaleryl-CoA dehydrogenase  24.6 
 
 
389 aa  61.6  0.00000002  Shewanella amazonensis SB2B  Bacteria  normal  normal  0.431847 
 
 
-
 
NC_007958  RPD_3693  isovaleryl-CoA dehydrogenase  23.64 
 
 
390 aa  62  0.00000002  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_013743  Htur_2576  acyl-CoA dehydrogenase domain protein  26.62 
 
 
378 aa  61.6  0.00000002  Haloterrigena turkmenica DSM 5511  Archaea  n/a    n/a   
 
 
-
 
NC_008345  Sfri_2727  isovaleryl-CoA dehydrogenase  23.15 
 
 
389 aa  61.6  0.00000002  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_009077  Mjls_3193  acyl-CoA dehydrogenase domain-containing protein  28.57 
 
 
399 aa  61.6  0.00000002  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_008578  Acel_0405  butyryl-CoA dehydrogenase  27.7 
 
 
388 aa  62  0.00000002  Acidothermus cellulolyticus 11B  Bacteria  normal  normal 
 
 
-
 
NC_014150  Bmur_1546  acyl-CoA dehydrogenase domain protein  24.92 
 
 
381 aa  61.6  0.00000002  Brachyspira murdochii DSM 12563  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_0882  acyl-CoA dehydrogenase domain-containing protein  26.09 
 
 
381 aa  60.8  0.00000003  Verminephrobacter eiseniae EF01-2  Bacteria  decreased coverage  0.000390729  normal  0.405813 
 
 
-
 
NC_009656  PSPA7_5007  acyl-CoA dehydrogenase  24.82 
 
 
378 aa  61.2  0.00000003  Pseudomonas aeruginosa PA7  Bacteria  normal  0.284133  n/a   
 
 
-
 
NC_007974  Rmet_5507  long-chain-acyl-CoA dehydrogenase  24.77 
 
 
385 aa  61.2  0.00000003  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
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