Gene Lcho_0727 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagLcho_0727 
Symbol 
ID6163064 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameLeptothrix cholodnii SP-6 
KingdomBacteria 
Replicon accessionNC_010524 
Strand+ 
Start bp775018 
End bp775692 
Gene Length675 bp 
Protein Length224 aa 
Translation table11 
GC content73% 
IMG OID641663477 
Producthypothetical protein 
Protein accessionYP_001789765 
Protein GI171057416 
COG category[I] Lipid transport and metabolism 
COG ID[COG1960] Acyl-CoA dehydrogenases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value0.0730349 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCACAGCC AGACCGCCTT TTCGCACCCG GTGCCGCCCA CGTCCGTTCC CGCTGCGTCG 
ATCCGCAGCC CGGACGCCTT TCAACGCGTG ATCGACAGCT GCCTGCTGCG CTGCGCGGTG 
CCGCCGGAGC TGGGGGGGCT CGGTGGCCCG ATCAGCGCGC TGCACGACGG CGCGCAGCGT 
CTGGCCGCAG ACTGCCCGGC GGCGGCCTGG GTGCTGTGGG CGCAGCGGCT GGCGATCGAG 
GCGCTGGTGC AGTCGCGCAA TGCCGGTCTG CGCGACTTCA TCCTGCCCGA TCTGCTCGCC 
GGCGAGCGCG CCGGCACCTT GCCGCTCAGC CTGGGCCGCA ACCCCGTGCA AGCGATCGAC 
ACGGGCCGCG GCTGGCGGCT GCACGGCCGC CTCGTGTGTG CATCCAACTG GCAGTGGGTC 
GGCCATTCGG TGGCCGTGCC GGTGCAGTTC GGGGCCGATC CGGCGGGCGT CGCCTGGGTC 
TGGCTGCGCG GTGAAGAAGA CGGCCTGGAC ATCGCGCCGC CGACCCATGC CGACGCACGG 
CCCGGCAGCC AAACGGCCGA GCTCACGCTG CGCGGCGTGT ACTTCCGTGA GGACGAATGG 
CTGGCCGGCG CCGAACTCGC CGCGCTGATC GACCCGATCG ACCAGGCCCT GCGGCCTACC 
TTGCGCGATC GCTGA
 
Protein sequence
MHSQTAFSHP VPPTSVPAAS IRSPDAFQRV IDSCLLRCAV PPELGGLGGP ISALHDGAQR 
LAADCPAAAW VLWAQRLAIE ALVQSRNAGL RDFILPDLLA GERAGTLPLS LGRNPVQAID 
TGRGWRLHGR LVCASNWQWV GHSVAVPVQF GADPAGVAWV WLRGEEDGLD IAPPTHADAR 
PGSQTAELTL RGVYFREDEW LAGAELAALI DPIDQALRPT LRDR