More than 300 homologs were found in PanDaTox collection
for query gene Gbro_4058 on replicon NC_013441
Organism: Gordonia bronchialis DSM 43247



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013441  Gbro_4058  short-chain dehydrogenase/reductase SDR  100 
 
 
274 aa  544  1e-154  Gordonia bronchialis DSM 43247  Bacteria  normal  0.485645  n/a   
 
 
-
 
NC_009565  TBFG_13520  short chain dehydrogenase  72.43 
 
 
314 aa  348  5e-95  Mycobacterium tuberculosis F11  Bacteria  normal  normal  0.0292785 
 
 
-
 
NC_009338  Mflv_1569  short chain dehydrogenase  64.84 
 
 
280 aa  329  3e-89  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.241614  normal  0.724417 
 
 
-
 
NC_008146  Mmcs_4606  short chain dehydrogenase  67.35 
 
 
281 aa  320  9.999999999999999e-87  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_009077  Mjls_4989  short chain dehydrogenase  67.35 
 
 
281 aa  320  9.999999999999999e-87  Mycobacterium sp. JLS  Bacteria  normal  normal  0.662802 
 
 
-
 
NC_008705  Mkms_4694  short chain dehydrogenase  67.35 
 
 
281 aa  320  9.999999999999999e-87  Mycobacterium sp. KMS  Bacteria  normal  normal  0.738169 
 
 
-
 
NC_008726  Mvan_5189  short chain dehydrogenase  64.36 
 
 
280 aa  309  2.9999999999999997e-83  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.673008  normal  0.0207924 
 
 
-
 
NC_009972  Haur_2614  short-chain dehydrogenase/reductase SDR  36.55 
 
 
257 aa  149  5e-35  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.042976  n/a   
 
 
-
 
NC_009427  Saro_3655  short-chain dehydrogenase/reductase SDR  37.65 
 
 
269 aa  145  5e-34  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_009338  Mflv_2071  short-chain dehydrogenase/reductase SDR  37.26 
 
 
258 aa  139  3.9999999999999997e-32  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.70228  normal  0.023925 
 
 
-
 
NC_007511  Bcep18194_B1515  Short-chain dehydrogenase/reductase SDR  34.43 
 
 
285 aa  135  9e-31  Burkholderia sp. 383  Bacteria  normal  0.0303752  normal  0.752518 
 
 
-
 
NC_009077  Mjls_4347  short-chain dehydrogenase/reductase SDR  36.88 
 
 
256 aa  134  1.9999999999999998e-30  Mycobacterium sp. JLS  Bacteria  normal  normal  0.206497 
 
 
-
 
NC_008146  Mmcs_4116  short-chain dehydrogenase/reductase SDR  36.88 
 
 
256 aa  134  1.9999999999999998e-30  Mycobacterium sp. MCS  Bacteria  normal  0.165575  n/a   
 
 
-
 
NC_008705  Mkms_4191  short-chain dehydrogenase/reductase SDR  36.88 
 
 
256 aa  134  1.9999999999999998e-30  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_011729  PCC7424_0224  7-alpha-hydroxysteroid dehydrogenase  36.99 
 
 
255 aa  133  3e-30  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.717009 
 
 
-
 
NC_013131  Caci_5981  short-chain dehydrogenase/reductase SDR  35.55 
 
 
258 aa  133  3e-30  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.951594  normal 
 
 
-
 
NC_010511  M446_0236  short-chain dehydrogenase/reductase SDR  36.18 
 
 
255 aa  133  3.9999999999999996e-30  Methylobacterium sp. 4-46  Bacteria  normal  hitchhiker  0.00815339 
 
 
-
 
NC_011370  Rleg2_6079  short-chain dehydrogenase/reductase SDR  36.84 
 
 
255 aa  132  3.9999999999999996e-30  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_1150  3-ketoacyl-(acyl-carrier-protein) reductase  35.34 
 
 
256 aa  132  3.9999999999999996e-30  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013202  Hmuk_1523  short-chain dehydrogenase/reductase SDR  37.26 
 
 
269 aa  131  1.0000000000000001e-29  Halomicrobium mukohataei DSM 12286  Archaea  normal  normal 
 
 
-
 
NC_009338  Mflv_1601  short chain dehydrogenase  35.97 
 
 
253 aa  130  3e-29  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.786043  normal 
 
 
-
 
NC_013441  Gbro_2395  short-chain dehydrogenase/reductase SDR  36.73 
 
 
264 aa  129  4.0000000000000003e-29  Gordonia bronchialis DSM 43247  Bacteria  normal  0.691642  n/a   
 
 
-
 
NC_013441  Gbro_3870  short-chain dehydrogenase/reductase SDR  37.85 
 
 
259 aa  129  4.0000000000000003e-29  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_2131  short-chain dehydrogenase/reductase SDR  37.3 
 
 
262 aa  129  5.0000000000000004e-29  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_2200  short chain dehydrogenase  33.06 
 
 
256 aa  129  7.000000000000001e-29  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_5444  short-chain dehydrogenase/reductase SDR  36.18 
 
 
255 aa  129  7.000000000000001e-29  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.844576  n/a   
 
 
-
 
NC_010511  M446_5536  short chain dehydrogenase  36.4 
 
 
262 aa  128  1.0000000000000001e-28  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_008726  Mvan_5156  short chain dehydrogenase  35.57 
 
 
254 aa  127  2.0000000000000002e-28  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.215894  normal 
 
 
-
 
NC_007511  Bcep18194_B2225  Short-chain dehydrogenase/reductase SDR  34.94 
 
 
267 aa  127  3e-28  Burkholderia sp. 383  Bacteria  normal  normal  0.801106 
 
 
-
 
NC_009077  Mjls_4960  short chain dehydrogenase  35.2 
 
 
253 aa  126  4.0000000000000003e-28  Mycobacterium sp. JLS  Bacteria  normal  0.599873  normal  0.483357 
 
 
-
 
NC_008146  Mmcs_4577  short chain dehydrogenase  35.2 
 
 
253 aa  126  4.0000000000000003e-28  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_4665  short chain dehydrogenase  35.2 
 
 
253 aa  126  4.0000000000000003e-28  Mycobacterium sp. KMS  Bacteria  normal  0.302874  normal 
 
 
-
 
NC_007778  RPB_1751  Short-chain dehydrogenase/reductase SDR  34.16 
 
 
257 aa  126  5e-28  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.0168825 
 
 
-
 
NC_009565  TBFG_10784  short chain dehydrogenase  35.04 
 
 
248 aa  125  8.000000000000001e-28  Mycobacterium tuberculosis F11  Bacteria  normal  normal 
 
 
-
 
NC_010338  Caul_0851  short-chain dehydrogenase/reductase SDR  34.01 
 
 
254 aa  124  1e-27  Caulobacter sp. K31  Bacteria  normal  0.0597888  normal  0.281853 
 
 
-
 
NC_014210  Ndas_1920  short-chain dehydrogenase/reductase SDR  39.76 
 
 
251 aa  124  1e-27  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.893367  normal  0.273767 
 
 
-
 
NC_009485  BBta_7068  SDR family dehydrogenase/reductase  33.75 
 
 
257 aa  124  2e-27  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.894165 
 
 
-
 
NC_009512  Pput_1909  short chain dehydrogenase  32.39 
 
 
255 aa  124  2e-27  Pseudomonas putida F1  Bacteria  normal  0.569755  normal 
 
 
-
 
NC_014158  Tpau_1853  short-chain dehydrogenase/reductase SDR  32.68 
 
 
251 aa  124  2e-27  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.635222  n/a   
 
 
-
 
NC_013510  Tcur_3978  short-chain dehydrogenase/reductase SDR  37.3 
 
 
255 aa  124  2e-27  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_3206  short-chain dehydrogenase/reductase SDR  35.22 
 
 
255 aa  124  2e-27  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_3548  short-chain dehydrogenase/reductase SDR  34.16 
 
 
257 aa  124  2e-27  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_013411  GYMC61_2515  short-chain dehydrogenase/reductase SDR  33.87 
 
 
250 aa  123  3e-27  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_009654  Mmwyl1_4175  short-chain dehydrogenase/reductase SDR  31.08 
 
 
258 aa  122  5e-27  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_013926  Aboo_0217  short-chain dehydrogenase/reductase SDR  33.47 
 
 
240 aa  122  5e-27  Aciduliprofundum boonei T469  Archaea  normal  n/a   
 
 
-
 
NC_008254  Meso_2224  short-chain dehydrogenase/reductase SDR  34.4 
 
 
251 aa  122  6e-27  Chelativorans sp. BNC1  Bacteria  normal  0.475602  n/a   
 
 
-
 
NC_009636  Smed_1437  short-chain dehydrogenase/reductase SDR  37.65 
 
 
250 aa  122  7e-27  Sinorhizobium medicae WSM419  Bacteria  normal  0.46093  decreased coverage  0.00000100027 
 
 
-
 
NC_008009  Acid345_0026  short-chain dehydrogenase/reductase SDR  34.96 
 
 
249 aa  122  7e-27  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.94443  normal 
 
 
-
 
NC_010086  Bmul_5273  short chain dehydrogenase  34.57 
 
 
254 aa  122  8e-27  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_3926  short chain dehydrogenase  31.98 
 
 
255 aa  121  9.999999999999999e-27  Pseudomonas putida KT2440  Bacteria  normal  0.411324  normal  0.0487597 
 
 
-
 
NC_008061  Bcen_5018  short chain dehydrogenase  34.16 
 
 
254 aa  121  9.999999999999999e-27  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008543  Bcen2424_5842  short chain dehydrogenase  34.16 
 
 
254 aa  121  9.999999999999999e-27  Burkholderia cenocepacia HI2424  Bacteria  normal  0.443713  normal 
 
 
-
 
NC_011757  Mchl_1526  short-chain dehydrogenase/reductase SDR  37.04 
 
 
254 aa  121  9.999999999999999e-27  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_4233  short-chain dehydrogenase/reductase SDR  33.74 
 
 
257 aa  121  9.999999999999999e-27  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_008726  Mvan_4643  short-chain dehydrogenase/reductase SDR  36.51 
 
 
274 aa  121  9.999999999999999e-27  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_1326  short-chain dehydrogenase/reductase SDR  37.04 
 
 
254 aa  120  1.9999999999999998e-26  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.393683 
 
 
-
 
NC_007974  Rmet_4745  Short-chain dehydrogenase/reductase SDR  32.1 
 
 
254 aa  120  1.9999999999999998e-26  Cupriavidus metallidurans CH34  Bacteria  normal  0.146753  normal  0.0678899 
 
 
-
 
NC_008048  Sala_3071  short-chain dehydrogenase/reductase SDR  33.2 
 
 
258 aa  120  1.9999999999999998e-26  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.13463  normal 
 
 
-
 
NC_008345  Sfri_2071  short chain dehydrogenase  31.98 
 
 
256 aa  120  1.9999999999999998e-26  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_2089  short-chain dehydrogenase/reductase SDR  35.41 
 
 
246 aa  120  1.9999999999999998e-26  Clostridium cellulolyticum H10  Bacteria  normal  0.0163129  n/a   
 
 
-
 
NC_013947  Snas_2913  short-chain dehydrogenase/reductase SDR  33.47 
 
 
247 aa  120  3e-26  Stackebrandtia nassauensis DSM 44728  Bacteria  hitchhiker  0.00331942  hitchhiker  0.00525068 
 
 
-
 
NC_013739  Cwoe_2297  short-chain dehydrogenase/reductase SDR  39.92 
 
 
267 aa  120  3e-26  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.0843841 
 
 
-
 
NC_010501  PputW619_3215  short chain dehydrogenase  31.73 
 
 
255 aa  120  3e-26  Pseudomonas putida W619  Bacteria  normal  normal  0.57556 
 
 
-
 
NC_011988  Avi_5343  carbonyl reductase  33.6 
 
 
242 aa  120  3e-26  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_0470  enoyl-(acyl carrier protein) reductase  34.13 
 
 
249 aa  120  3e-26  Geobacillus sp. WCH70  Bacteria  hitchhiker  0.00000863447  n/a   
 
 
-
 
NC_010322  PputGB1_3560  short chain dehydrogenase  31.58 
 
 
255 aa  119  3.9999999999999996e-26  Pseudomonas putida GB-1  Bacteria  normal  0.457145  normal  0.310407 
 
 
-
 
NC_009720  Xaut_2759  short-chain dehydrogenase/reductase SDR  35.92 
 
 
261 aa  120  3.9999999999999996e-26  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_7515  short-chain dehydrogenase/reductase SDR  36.44 
 
 
246 aa  119  3.9999999999999996e-26  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_3707  short-chain dehydrogenase/reductase SDR  32.93 
 
 
261 aa  119  3.9999999999999996e-26  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.372057  n/a   
 
 
-
 
NC_007348  Reut_B4043  Short-chain dehydrogenase/reductase SDR  31.69 
 
 
254 aa  119  3.9999999999999996e-26  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007493  RSP_2160  Short-chain dehydrogenase/reductase  34.29 
 
 
254 aa  120  3.9999999999999996e-26  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_010320  Teth514_1723  3-oxoacyl-(acyl-carrier-protein) reductase  30.4 
 
 
247 aa  119  3.9999999999999996e-26  Thermoanaerobacter sp. X514  Bacteria  unclonable  0.000000000657249  n/a   
 
 
-
 
NC_011004  Rpal_2453  short-chain dehydrogenase/reductase SDR  37.55 
 
 
249 aa  119  4.9999999999999996e-26  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.728081  n/a   
 
 
-
 
NC_007778  RPB_2264  Short-chain dehydrogenase/reductase SDR  35.22 
 
 
255 aa  119  4.9999999999999996e-26  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.136651  normal 
 
 
-
 
NC_007925  RPC_3184  short-chain dehydrogenase/reductase SDR  35.34 
 
 
249 aa  119  4.9999999999999996e-26  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.0196402  normal  0.84005 
 
 
-
 
NC_007778  RPB_2262  short-chain dehydrogenase/reductase SDR  34.15 
 
 
261 aa  119  6e-26  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_013745  Htur_4446  short-chain dehydrogenase/reductase SDR  35.27 
 
 
254 aa  119  6e-26  Haloterrigena turkmenica DSM 5511  Archaea  normal  0.287432  n/a   
 
 
-
 
NC_007347  Reut_A1551  Short-chain dehydrogenase/reductase SDR  32.6 
 
 
282 aa  119  7.999999999999999e-26  Ralstonia eutropha JMP134  Bacteria  normal  0.489545  n/a   
 
 
-
 
NC_009049  Rsph17029_0834  short-chain dehydrogenase/reductase SDR  33.88 
 
 
254 aa  119  7.999999999999999e-26  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_009943  Dole_2662  short-chain dehydrogenase/reductase SDR  33.46 
 
 
266 aa  117  9.999999999999999e-26  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.783199  n/a   
 
 
-
 
NC_007925  RPC_3478  short-chain dehydrogenase/reductase SDR  31.97 
 
 
255 aa  118  9.999999999999999e-26  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_5135  3-ketoacyl-(acyl-carrier-protein) reductase  35.22 
 
 
251 aa  117  9.999999999999999e-26  Actinosynnema mirum DSM 43827  Bacteria  normal  0.971494  n/a   
 
 
-
 
NC_007958  RPD_4158  short-chain dehydrogenase/reductase SDR  33.74 
 
 
262 aa  118  9.999999999999999e-26  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.526951  normal 
 
 
-
 
NC_009719  Plav_0548  short-chain dehydrogenase/reductase SDR  34.54 
 
 
261 aa  118  9.999999999999999e-26  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_5098  putative short-chain dehydrogenase/reductase SDR  33.2 
 
 
255 aa  118  9.999999999999999e-26  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_009801  EcE24377A_1827  7-alpha-hydroxysteroid dehydrogenase  34.82 
 
 
255 aa  117  1.9999999999999998e-25  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_009636  Smed_2459  short-chain dehydrogenase/reductase SDR  33.07 
 
 
264 aa  117  1.9999999999999998e-25  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_3419  short chain dehydrogenase  31.17 
 
 
255 aa  117  1.9999999999999998e-25  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.689572  normal 
 
 
-
 
NC_011071  Smal_3595  tropinone reductase  32.54 
 
 
258 aa  117  1.9999999999999998e-25  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.855153  normal 
 
 
-
 
NC_009720  Xaut_2807  short-chain dehydrogenase/reductase SDR  36.44 
 
 
253 aa  117  1.9999999999999998e-25  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.422647 
 
 
-
 
NC_011369  Rleg2_2905  short-chain dehydrogenase/reductase SDR  37.25 
 
 
249 aa  117  1.9999999999999998e-25  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.0428484  normal 
 
 
-
 
NC_014165  Tbis_1608  short-chain dehydrogenase/reductase SDR  34.16 
 
 
250 aa  117  1.9999999999999998e-25  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_4002  short-chain dehydrogenase/reductase SDR  36.95 
 
 
261 aa  117  1.9999999999999998e-25  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
CP001637  EcDH1_2023  short-chain dehydrogenase/reductase SDR  34.82 
 
 
255 aa  117  3e-25  Escherichia coli DH1  Bacteria  normal  0.444586  n/a   
 
 
-
 
NC_009921  Franean1_4317  short-chain dehydrogenase/reductase SDR  35.22 
 
 
234 aa  117  3e-25  Frankia sp. EAN1pec  Bacteria  normal  0.0991034  normal  0.658106 
 
 
-
 
NC_010717  PXO_04045  tropinone reductase  30.95 
 
 
258 aa  116  3e-25  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_010676  Bphyt_6656  short-chain dehydrogenase/reductase SDR  35.77 
 
 
249 aa  117  3e-25  Burkholderia phytofirmans PsJN  Bacteria  normal  0.790867  normal  0.270985 
 
 
-
 
NC_010658  SbBS512_E1806  7-alpha-hydroxysteroid dehydrogenase  34.82 
 
 
255 aa  117  3e-25  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_2011  7-alpha-hydroxysteroid dehydrogenase  34.82 
 
 
255 aa  117  3e-25  Escherichia coli ATCC 8739  Bacteria  normal  0.617976  normal  0.65251 
 
 
-
 
NC_008705  Mkms_3750  short-chain dehydrogenase/reductase SDR  33.47 
 
 
233 aa  116  3e-25  Mycobacterium sp. KMS  Bacteria  normal  0.8736  normal  0.785854 
 
 
-
 
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