| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_3184 |
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| Symbol | |
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| ID | 3972195 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | + |
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| Start bp | 3526499 |
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| End bp | 3527248 |
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| Gene Length | 750 bp |
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| Protein Length | 249 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637926294 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_533045 |
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| Protein GI | 90424675 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0196402 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.84005 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGACCAAGA CACTGCAAGG CAAGGTTGCG CTGGTGACCG GCGCATCCAA GGGCATCGGC
GCCGCCATCG CGCTTAAATT GGCGGCGGAA GGTGCCGTGG TGGCGGTTAA CTACGCCACC
GGCAAGGATG GCGCCGACGC CGTGGTCGCT AAGATCACCG CGGCCGGCGG CAAGGCGGTC
GCCGTGCACG GCAATCTCGC CGAGCCTGGC GATTCCAAGA AGCTGGTCGC CGCCACCGTG
CAGGCGCTGG GCAAGATCGA CGTGCTGGTC AACAATGCCG GCGTCTACGA CATGCTGCCG
CTCGACGCCA TTACGCCCGA GCACTTTCAC AAGCAGTTCA ACGTCAACGT GCTCGGCCTG
CTGCTGGTGA CGCAGGAAGC GGCGCGGCAT TTCAACGACG GCGGCAGCAT CGTCAACATC
TCGTCCGGCG TGTCGACCAT GGCGATGCCG GGCACCGCGG TGTACGGCGC CACCAAGGCG
TCGGTCGACT TGATCACCGG CGTGCTGGCC AAGGAACTGG CGCCGCGCAA GATCCGCGTC
AACGCGGTCA ATCCCGGCAT GGTGGTGACC GAAGGCGTCA AGACCGCCGG CTTCCACGAG
GGCGCGATGC GCAAGCAAAT CGAAGCCATC ACGCCGCTGG GTCGCGTCGG CGAAGCCGAG
GAGATCGCCT CGGTGGTCGC GTTCCTCGCT TCGGACGGCG CGTCCTACGT CACCGGCGAG
ACGCTGCACG TCACCGGCGG GCTCCGCTAA
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| Protein sequence | MTKTLQGKVA LVTGASKGIG AAIALKLAAE GAVVAVNYAT GKDGADAVVA KITAAGGKAV
AVHGNLAEPG DSKKLVAATV QALGKIDVLV NNAGVYDMLP LDAITPEHFH KQFNVNVLGL
LLVTQEAARH FNDGGSIVNI SSGVSTMAMP GTAVYGATKA SVDLITGVLA KELAPRKIRV
NAVNPGMVVT EGVKTAGFHE GAMRKQIEAI TPLGRVGEAE EIASVVAFLA SDGASYVTGE
TLHVTGGLR
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