| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_3071 |
|---|
| Symbol | |
|---|
| ID | 4083079 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | - |
|---|
| Start bp | 3221199 |
|---|
| End bp | 3221975 |
|---|
| Gene Length | 777 bp |
|---|
| Protein Length | 258 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 638011457 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_618108 |
|---|
| Protein GI | 103488547 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.13463 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCTGT TCGACATGAC CGGCCAGGTC GCGCTGATCA CCGGATCGTC GCGCGGCATC
GGCAAGGCGA CGGCGGAAGC GATGGCCGAA CAGGGCGCGA AGGTCGTGAT TTCGAGCCGC
AAGCAAGATG CGTGCGACGC CACCGCGGCG GAGATCAACG CGCGGTTCGG CGAAGGCACC
GCGATTGCGG TCGCGGCGAA CATCTCGTCG AAGGATGATC TTCAGAACCT CGTCAACGAG
ACGCGCGCCG CCTTCGGCAA GATCACCGCG CTCGTCTGCA ACGCCGCGTC GAACCCCTAT
TATGGCCCCG GCCTCGGCAT CAGCGACGAG CAGTTCCGCA AGATCATGGA CAATAATATC
CTGTCCAACC ACTGGCTGAT CAGCATGGTC GCGCCCGAAA TGCTCGAACG CGGCGACGGG
TCGATCACGA TCATCAGTTC GATCGGCGGG CTGAAAGGAT CGCCGATCAT CGGCGCTTAC
GGGATTTCCA AGGCCGCCGA CATGCAGGTC GCGCGCAATT TTTCGGTCGA GTTCGGGCCG
AGGGGCGTGC GCGTCAATTG CATCGCGCCG GGGCTGATCC GTACCGACAT GGCGCGCGCC
TTGTGGGAAA ATCCCGAAAA TCTCAAACGC TCGACCGCCG CCTCGACGCT GAAGCGCATC
GGCGAACCGC ACGAGATCGC GGGCGCCGCG GTGTTCCTCG CCAGCAAGGC GGGGGCTTTT
ACCACCGGCC AGACCATCGT TTGCGATGGC GGGGCCACGA TTTCGGGAGG CGCATGA
|
|---|
| Protein sequence | MSLFDMTGQV ALITGSSRGI GKATAEAMAE QGAKVVISSR KQDACDATAA EINARFGEGT
AIAVAANISS KDDLQNLVNE TRAAFGKITA LVCNAASNPY YGPGLGISDE QFRKIMDNNI
LSNHWLISMV APEMLERGDG SITIISSIGG LKGSPIIGAY GISKAADMQV ARNFSVEFGP
RGVRVNCIAP GLIRTDMARA LWENPENLKR STAASTLKRI GEPHEIAGAA VFLASKAGAF
TTGQTIVCDG GATISGGA
|
|---|
| |