More than 300 homologs were found in PanDaTox collection
for query gene DhcVS_1311 on replicon NC_013552
Organism: Dehalococcoides sp. VS



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013552  DhcVS_1311  DNA-binding response regulator  100 
 
 
233 aa  468  1.0000000000000001e-131  Dehalococcoides sp. VS  Bacteria  normal  n/a   
 
 
-
 
NC_013552  DhcVS_94  DNA-binding response regulator  47.06 
 
 
228 aa  213  1.9999999999999998e-54  Dehalococcoides sp. VS  Bacteria  normal  n/a   
 
 
-
 
NC_009455  DehaBAV1_0286  two component transcriptional regulator  47.96 
 
 
226 aa  211  7e-54  Dehalococcoides sp. BAV1  Bacteria  normal  n/a   
 
 
-
 
NC_009455  DehaBAV1_0274  two component transcriptional regulator  44.34 
 
 
228 aa  187  1e-46  Dehalococcoides sp. BAV1  Bacteria  normal  n/a   
 
 
-
 
NC_013552  DhcVS_86  DNA-binding response regulator  43.24 
 
 
227 aa  186  2e-46  Dehalococcoides sp. VS  Bacteria  normal  n/a   
 
 
-
 
NC_013552  DhcVS_1322  DNA-binding response regulator  41.96 
 
 
226 aa  186  4e-46  Dehalococcoides sp. VS  Bacteria  normal  0.423029  n/a   
 
 
-
 
NC_002936  DET0170  DNA-binding response regulator  41.05 
 
 
232 aa  184  1.0000000000000001e-45  Dehalococcoides ethenogenes 195  Bacteria  normal  n/a   
 
 
-
 
NC_013552  DhcVS_106  DNA-binding response regulator  43.89 
 
 
225 aa  182  3e-45  Dehalococcoides sp. VS  Bacteria  normal  n/a   
 
 
-
 
NC_013552  DhcVS_1432  DNA-binding response regulator  40.54 
 
 
225 aa  179  2.9999999999999997e-44  Dehalococcoides sp. VS  Bacteria  normal  n/a   
 
 
-
 
NC_009455  DehaBAV1_0106  two component transcriptional regulator  43.48 
 
 
227 aa  177  9e-44  Dehalococcoides sp. BAV1  Bacteria  normal  n/a   
 
 
-
 
NC_002936  DET1540  DNA-binding response regulator  38.74 
 
 
225 aa  175  4e-43  Dehalococcoides ethenogenes 195  Bacteria  normal  n/a   
 
 
-
 
NC_002936  DET0232  DNA-binding response regulator  39.82 
 
 
227 aa  172  2.9999999999999996e-42  Dehalococcoides ethenogenes 195  Bacteria  normal  0.156156  n/a   
 
 
-
 
NC_002936  DET0316  DNA-binding response regulator  38.67 
 
 
225 aa  167  1e-40  Dehalococcoides ethenogenes 195  Bacteria  normal  n/a   
 
 
-
 
NC_013552  DhcVS_1394  DNA-binding response regulator  38.22 
 
 
225 aa  163  2.0000000000000002e-39  Dehalococcoides sp. VS  Bacteria  normal  n/a   
 
 
-
 
NC_013552  DhcVS_85  DNA-binding response regulator  37.72 
 
 
226 aa  162  6e-39  Dehalococcoides sp. VS  Bacteria  normal  n/a   
 
 
-
 
NC_009455  DehaBAV1_0124  two component transcriptional regulator  34.39 
 
 
225 aa  160  1e-38  Dehalococcoides sp. BAV1  Bacteria  normal  n/a   
 
 
-
 
NC_002936  DET0300  DNA-binding response regulator  34.39 
 
 
225 aa  160  2e-38  Dehalococcoides ethenogenes 195  Bacteria  normal  n/a   
 
 
-
 
NC_013552  DhcVS_1355  DNA-binding response regulator  33.94 
 
 
225 aa  156  3e-37  Dehalococcoides sp. VS  Bacteria  normal  n/a   
 
 
-
 
NC_002936  DET0304  response regulator  36.24 
 
 
223 aa  154  9e-37  Dehalococcoides ethenogenes 195  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_0499  winged helix family two component transcriptional regulator  36.24 
 
 
229 aa  154  9e-37  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_013552  DhcVS_1330  DNA-binding response regulator  40.49 
 
 
209 aa  154  2e-36  Dehalococcoides sp. VS  Bacteria  normal  n/a   
 
 
-
 
NC_008578  Acel_0088  two component transcriptional regulator  37.78 
 
 
228 aa  153  2.9999999999999998e-36  Acidothermus cellulolyticus 11B  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_0961  response regulator receiver protein  36.61 
 
 
229 aa  152  4e-36  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_009972  Haur_0804  two component transcriptional regulator  37.95 
 
 
236 aa  149  4e-35  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.324741  n/a   
 
 
-
 
NC_009523  RoseRS_0761  two component transcriptional regulator  39.64 
 
 
229 aa  149  4e-35  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.179681 
 
 
-
 
NC_012803  Mlut_03750  PhoP-like protein  37.05 
 
 
226 aa  148  7e-35  Micrococcus luteus NCTC 2665  Bacteria  normal  0.181369  n/a   
 
 
-
 
NC_012034  Athe_0080  two component transcriptional regulator, winged helix family  33.92 
 
 
230 aa  148  7e-35  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_007333  Tfu_2910  response regulator receiver  36.61 
 
 
230 aa  148  9e-35  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_4445  two component transcriptional regulator  39.19 
 
 
229 aa  147  1.0000000000000001e-34  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.14031 
 
 
-
 
NC_010320  Teth514_0439  two component transcriptional regulator  36.32 
 
 
225 aa  146  3e-34  Thermoanaerobacter sp. X514  Bacteria  unclonable  0.000000000223011  n/a   
 
 
-
 
NC_009767  Rcas_4351  two component transcriptional regulator  36.16 
 
 
245 aa  146  3e-34  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.110039  normal 
 
 
-
 
NC_013205  Aaci_2922  two component transcriptional regulator, winged helix family  36.61 
 
 
230 aa  145  5e-34  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.221617  n/a   
 
 
-
 
NC_009523  RoseRS_0188  two component transcriptional regulator  36.16 
 
 
245 aa  145  5e-34  Roseiflexus sp. RS-1  Bacteria  hitchhiker  0.00347389  normal  0.0545477 
 
 
-
 
NC_010001  Cphy_1954  two component transcriptional regulator  32.89 
 
 
229 aa  144  1e-33  Clostridium phytofermentans ISDg  Bacteria  decreased coverage  0.000155813  n/a   
 
 
-
 
NC_009012  Cthe_1847  two component transcriptional regulator  37.39 
 
 
234 aa  144  1e-33  Clostridium thermocellum ATCC 27405  Bacteria  hitchhiker  0.00000121968  n/a   
 
 
-
 
NC_009455  DehaBAV1_0176  two component transcriptional regulator  33.03 
 
 
226 aa  143  2e-33  Dehalococcoides sp. BAV1  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_4619  two component transcriptional regulator  37.89 
 
 
245 aa  143  3e-33  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.0926269 
 
 
-
 
NC_013526  Tter_2120  two component transcriptional regulator, winged helix family  37.84 
 
 
238 aa  143  3e-33  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_0700  two component transcriptional regulator, winged helix family  36.16 
 
 
226 aa  143  3e-33  Thermomonospora curvata DSM 43183  Bacteria  normal  0.768939  n/a   
 
 
-
 
NC_011830  Dhaf_1665  two component transcriptional regulator, winged helix family  35.37 
 
 
232 aa  142  4e-33  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_014210  Ndas_0299  two component transcriptional regulator, winged helix family  32.29 
 
 
231 aa  142  6e-33  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.867846 
 
 
-
 
NC_013169  Ksed_03700  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  36.16 
 
 
226 aa  142  6e-33  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal  0.132847 
 
 
-
 
NC_012669  Bcav_3778  two component transcriptional regulator, winged helix family  34.23 
 
 
232 aa  142  7e-33  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.0820994  normal 
 
 
-
 
NC_011899  Hore_04710  two component transcriptional regulator, winged helix family  35.98 
 
 
237 aa  141  8e-33  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_010320  Teth514_1155  two component transcriptional regulator  36.24 
 
 
231 aa  141  8e-33  Thermoanaerobacter sp. X514  Bacteria  decreased coverage  0.000000430064  n/a   
 
 
-
 
NC_009767  Rcas_0421  two component transcriptional regulator  38.33 
 
 
245 aa  141  9e-33  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.0518956  normal 
 
 
-
 
NC_002936  DET0177  DNA-binding response regulator  33.48 
 
 
226 aa  140  9.999999999999999e-33  Dehalococcoides ethenogenes 195  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_5960  two component transcriptional regulator, winged helix family  33.33 
 
 
226 aa  141  9.999999999999999e-33  Actinosynnema mirum DSM 43827  Bacteria  normal  0.891848  n/a   
 
 
-
 
NC_011661  Dtur_1237  two component transcriptional regulator, winged helix family  35.29 
 
 
232 aa  140  9.999999999999999e-33  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_8215  two component transcriptional regulator, winged helix family  35.71 
 
 
226 aa  141  9.999999999999999e-33  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_6145  two component transcriptional regulator  35.27 
 
 
228 aa  140  9.999999999999999e-33  Frankia sp. EAN1pec  Bacteria  normal  normal  0.788201 
 
 
-
 
NC_008578  Acel_1196  two component transcriptional regulator  35.62 
 
 
240 aa  140  9.999999999999999e-33  Acidothermus cellulolyticus 11B  Bacteria  normal  normal 
 
 
-
 
NC_014210  Ndas_4322  two component transcriptional regulator, winged helix family  36.16 
 
 
231 aa  140  1.9999999999999998e-32  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_2051  two component transcriptional regulator, winged helix family  34.67 
 
 
247 aa  140  1.9999999999999998e-32  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.520505  normal 
 
 
-
 
NC_008541  Arth_0724  two component transcriptional regulator  36.28 
 
 
226 aa  140  1.9999999999999998e-32  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_011886  Achl_1708  two component transcriptional regulator, winged helix family  34.39 
 
 
228 aa  140  1.9999999999999998e-32  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.476364 
 
 
-
 
NC_009092  Shew_3258  two component heavy metal response transcriptional regulator  37.67 
 
 
238 aa  140  1.9999999999999998e-32  Shewanella loihica PV-4  Bacteria  hitchhiker  0.00206307  normal  0.0675777 
 
 
-
 
NC_013235  Namu_4929  two component transcriptional regulator, winged helix family  36.04 
 
 
226 aa  139  3e-32  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_013552  DhcVS_166  DNA-binding response regulator  32.13 
 
 
226 aa  139  3e-32  Dehalococcoides sp. VS  Bacteria  normal  n/a   
 
 
-
 
NC_010320  Teth514_0766  two component transcriptional regulator  35.81 
 
 
231 aa  140  3e-32  Thermoanaerobacter sp. X514  Bacteria  normal  0.585906  n/a   
 
 
-
 
NC_009565  TBFG_10499  two component system sensor transduction protein regX3  36.94 
 
 
227 aa  139  3e-32  Mycobacterium tuberculosis F11  Bacteria  decreased coverage  2.46064e-66  normal 
 
 
-
 
NC_013093  Amir_3871  two component transcriptional regulator, winged helix family  34.67 
 
 
227 aa  139  3e-32  Actinosynnema mirum DSM 43827  Bacteria  hitchhiker  0.0000000473157  n/a   
 
 
-
 
NC_013235  Namu_5029  two component transcriptional regulator, winged helix family  33.18 
 
 
225 aa  139  3e-32  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_007493  RSP_1269  two component transcriptional regulator  36.32 
 
 
228 aa  139  3.9999999999999997e-32  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_008699  Noca_1865  response regulator receiver  33.18 
 
 
224 aa  139  3.9999999999999997e-32  Nocardioides sp. JS614  Bacteria  normal  0.59899  n/a   
 
 
-
 
NC_008699  Noca_4046  response regulator receiver  34.98 
 
 
225 aa  139  3.9999999999999997e-32  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_013172  Bfae_20650  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  31.6 
 
 
231 aa  139  3.9999999999999997e-32  Brachybacterium faecium DSM 4810  Bacteria  normal  0.0260682  n/a   
 
 
-
 
NC_011831  Cagg_1100  two component transcriptional regulator, winged helix family  36.16 
 
 
236 aa  139  3.9999999999999997e-32  Chloroflexus aggregans DSM 9485  Bacteria  normal  unclonable  0.0000000182155 
 
 
-
 
NC_011886  Achl_0850  two component transcriptional regulator, winged helix family  35.27 
 
 
226 aa  139  4.999999999999999e-32  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_009767  Rcas_0997  two component transcriptional regulator  36.4 
 
 
230 aa  138  6e-32  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.679101  normal 
 
 
-
 
NC_009523  RoseRS_3818  two component transcriptional regulator  37.05 
 
 
230 aa  138  6e-32  Roseiflexus sp. RS-1  Bacteria  normal  0.386967  normal  0.165932 
 
 
-
 
NC_011146  Gbem_1172  two component transcriptional regulator, winged helix family  38.62 
 
 
235 aa  138  8.999999999999999e-32  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_0580  two component transcriptional regulator, winged helix family  34.51 
 
 
226 aa  138  8.999999999999999e-32  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_010623  Bphy_5426  two component transcriptional regulator  39.13 
 
 
251 aa  138  8.999999999999999e-32  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_012918  GM21_3122  two component transcriptional regulator, winged helix family  35.91 
 
 
235 aa  137  1e-31  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_007575  Suden_0531  two component transcriptional regulator  39.23 
 
 
229 aa  137  1e-31  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  n/a   
 
 
-
 
NC_013441  Gbro_0997  response regulator receiver  38.12 
 
 
228 aa  137  1e-31  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_0488  two component transcriptional regulator, winged helix family  35.78 
 
 
235 aa  137  1e-31  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  hitchhiker  0.00220414 
 
 
-
 
NC_009972  Haur_3061  two component transcriptional regulator  34.65 
 
 
227 aa  137  1e-31  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.799336  n/a   
 
 
-
 
NC_008726  Mvan_0831  two component transcriptional regulator  36.32 
 
 
228 aa  137  1e-31  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.310785  normal 
 
 
-
 
NC_007347  Reut_A0185  DNA-binding response regulator CreB  35.62 
 
 
226 aa  137  2e-31  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_012034  Athe_1456  two component transcriptional regulator, winged helix family  35.59 
 
 
223 aa  137  2e-31  Anaerocellum thermophilum DSM 6725  Bacteria  decreased coverage  0.000183373  n/a   
 
 
-
 
NC_013159  Svir_02690  response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein  35.24 
 
 
229 aa  137  2e-31  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_4649  two component transcriptional regulator  32.59 
 
 
230 aa  137  2e-31  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.424735  normal 
 
 
-
 
NC_013170  Ccur_02230  response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein  35.56 
 
 
229 aa  137  2e-31  Cryptobacterium curtum DSM 15641  Bacteria  normal  normal 
 
 
-
 
NC_008146  Mmcs_0661  two component transcriptional regulator  36.32 
 
 
228 aa  137  2e-31  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_009338  Mflv_0082  two component transcriptional regulator  36.32 
 
 
228 aa  136  2e-31  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_008554  Sfum_2656  two component transcriptional regulator  38.57 
 
 
226 aa  137  2e-31  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.311089  normal  0.831438 
 
 
-
 
NC_008705  Mkms_0674  two component transcriptional regulator  36.32 
 
 
228 aa  137  2e-31  Mycobacterium sp. KMS  Bacteria  normal  normal  0.850641 
 
 
-
 
NC_009077  Mjls_0654  two component transcriptional regulator  36.32 
 
 
228 aa  137  2e-31  Mycobacterium sp. JLS  Bacteria  normal  normal  0.682961 
 
 
-
 
NC_011898  Ccel_1714  two component transcriptional regulator, winged helix family  34.47 
 
 
234 aa  137  2e-31  Clostridium cellulolyticum H10  Bacteria  normal  0.233786  n/a   
 
 
-
 
NC_013165  Shel_02200  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  38.5 
 
 
231 aa  136  3.0000000000000003e-31  Slackia heliotrinireducens DSM 20476  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_4120  DNA-binding response regulator CreB  36.24 
 
 
226 aa  136  3.0000000000000003e-31  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_007333  Tfu_2496  response regulator receiver  34.38 
 
 
225 aa  136  3.0000000000000003e-31  Thermobifida fusca YX  Bacteria  normal  0.491467  n/a   
 
 
-
 
NC_009953  Sare_0404  two component transcriptional regulator  37.33 
 
 
227 aa  136  3.0000000000000003e-31  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.00316128 
 
 
-
 
NC_013093  Amir_6749  two component transcriptional regulator, winged helix family  35.4 
 
 
226 aa  136  3.0000000000000003e-31  Actinosynnema mirum DSM 43827  Bacteria  normal  0.290774  n/a   
 
 
-
 
NC_013595  Sros_5447  response regulator receiver protein  36.82 
 
 
228 aa  136  3.0000000000000003e-31  Streptosporangium roseum DSM 43021  Bacteria  hitchhiker  0.00883739  normal  0.15212 
 
 
-
 
NC_013131  Caci_6795  two component transcriptional regulator, winged helix family  33.62 
 
 
233 aa  136  3.0000000000000003e-31  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.510223  normal 
 
 
-
 
NC_011831  Cagg_1351  two component transcriptional regulator, winged helix family  35 
 
 
225 aa  136  3.0000000000000003e-31  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.00188361  unclonable  0.0000000206018 
 
 
-
 
NC_009049  Rsph17029_2927  two component transcriptional regulator  35.47 
 
 
228 aa  136  3.0000000000000003e-31  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
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