| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3258 |
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| Symbol | |
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| ID | 4921335 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 3895743 |
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| End bp | 3896459 |
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| Gene Length | 717 bp |
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| Protein Length | 238 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640164870 |
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| Product | two component heavy metal response transcriptional regulator |
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| Protein accession | YP_001095383 |
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| Protein GI | 127514186 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
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| TIGRFAM ID | [TIGR01387] heavy metal response regulator |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00206307 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0675777 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCAAATCG GCTTAAACAA GTTAAAGGCT TGCAGGCAAA TGCGAATATT AGTGATCGAA
GACGAGATCA AGATAGGCGA CTATCTCAAG AAGGGATTGG AAGAAGCCGG ATATACCATC
AGCCTGTGTC GCAATGGCTT GGATGGCTAT CACTGCGCCA TCTCTGAACA TTTTGATCTT
ATTATTCTCG ATGTGATGCT ACCCGACATG AACGGGTGGC AAATCCTCGA AAAAATCCGC
CTCAACAATT CAGATATCCC GGTCATGTTC CTGACCGCGA AGGACAGCCT GGAAGACAAG
ATCAACGGGC TCGAATCCGG CGCCGATGAC TACCTGGTAA AGCCCTTTGC CTTTGCCGAA
CTGCTGGCAC GTGTAAAAAC CCTATTACGC AGAGGCACGA AACAGCTCCA GTCTGACACC
CTAACCCTTC ATGGGTTAAA ACTGGATATA ACAAAACGCC GGGCCAGCCG GGAACAAACG
AAACTGCATC TCACCAATAA GGAGTTTTCC CTACTCGAGT TATTGGTACG CCATCAGGGT
GAAGTGCTCA CCCGCTCTTT CATCGCATCT CAGGTATGGG ACATGAATTT CGATAGCGAC
ACCAATGTGA TCGATGTCGC CATCAGGCGC CTAAGGGCCA AGGTTGACGA TCCCTTCTCG
GTAAAGCTTA TCCATACCGT ACGCGGCATG GGATATAAAC TGGACACGGA AGCCTGA
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| Protein sequence | MQIGLNKLKA CRQMRILVIE DEIKIGDYLK KGLEEAGYTI SLCRNGLDGY HCAISEHFDL
IILDVMLPDM NGWQILEKIR LNNSDIPVMF LTAKDSLEDK INGLESGADD YLVKPFAFAE
LLARVKTLLR RGTKQLQSDT LTLHGLKLDI TKRRASREQT KLHLTNKEFS LLELLVRHQG
EVLTRSFIAS QVWDMNFDSD TNVIDVAIRR LRAKVDDPFS VKLIHTVRGM GYKLDTEA
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