More than 300 homologs were found in PanDaTox collection
for query gene BBta_6381 on replicon NC_009485
Organism: Bradyrhizobium sp. BTAi1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009485  BBta_6381  two-component LuxR family transcriptional regulator  100 
 
 
200 aa  394  1e-109  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.708532  normal 
 
 
-
 
NC_009457  VC0395_A2275  LuxR family transcriptional regulator  31.34 
 
 
209 aa  99.4  3e-20  Vibrio cholerae O395  Bacteria  normal  0.314776  n/a   
 
 
-
 
NC_011071  Smal_2061  two component transcriptional regulator, LuxR family  30.85 
 
 
224 aa  98.6  5e-20  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.737796  normal 
 
 
-
 
NC_013595  Sros_4744  response regulator receiver protein  33.65 
 
 
209 aa  95.1  5e-19  Streptosporangium roseum DSM 43021  Bacteria  normal  0.620464  normal  0.690137 
 
 
-
 
NC_007509  Bcep18194_C7667  two component LuxR family transcriptional regulator  33.65 
 
 
209 aa  94.4  1e-18  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_008578  Acel_0973  two component LuxR family transcriptional regulator  32.16 
 
 
216 aa  94  1e-18  Acidothermus cellulolyticus 11B  Bacteria  normal  0.255067  normal  0.404517 
 
 
-
 
NC_008699  Noca_2943  two component LuxR family transcriptional regulator  33.5 
 
 
215 aa  94.4  1e-18  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_1563  two component LuxR family transcriptional regulator  29.28 
 
 
257 aa  91.7  7e-18  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.781509  n/a   
 
 
-
 
NC_009565  TBFG_10861  nitrate/nitrite response transcriptional regulatory protein narL  35.32 
 
 
216 aa  91.3  9e-18  Mycobacterium tuberculosis F11  Bacteria  normal  hitchhiker  0.000061441 
 
 
-
 
NC_013061  Phep_2962  response regulator receiver  30.92 
 
 
206 aa  91.3  1e-17  Pedobacter heparinus DSM 2366  Bacteria  normal  0.117851  normal 
 
 
-
 
NC_009092  Shew_2614  two component LuxR family transcriptional regulator  32.49 
 
 
222 aa  90.9  1e-17  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_009338  Mflv_3579  two component LuxR family transcriptional regulator  35.5 
 
 
217 aa  90.5  2e-17  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.393396  normal  0.0540104 
 
 
-
 
NC_013947  Snas_2579  two component transcriptional regulator, LuxR family  33.99 
 
 
213 aa  89.4  3e-17  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.0500394 
 
 
-
 
NC_013946  Mrub_1071  two component LuxR family transcriptional regulator  32.66 
 
 
209 aa  89.4  3e-17  Meiothermus ruber DSM 1279  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_1543  two component transcriptional regulator, LuxR family  32.35 
 
 
221 aa  88.6  5e-17  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_013124  Afer_1981  two component transcriptional regulator, LuxR family  33.97 
 
 
222 aa  88.2  7e-17  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_2247  two component LuxR family transcriptional regulator  31.84 
 
 
220 aa  88.2  7e-17  Shewanella putrefaciens CN-32  Bacteria  normal  0.998494  n/a   
 
 
-
 
NC_010511  M446_0625  two component LuxR family transcriptional regulator  31.86 
 
 
221 aa  88.2  8e-17  Methylobacterium sp. 4-46  Bacteria  normal  0.793996  hitchhiker  0.00440064 
 
 
-
 
NC_008700  Sama_2076  response regulator receiver protein  33.01 
 
 
238 aa  87.8  9e-17  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_014210  Ndas_0346  two component transcriptional regulator, LuxR family  31.37 
 
 
210 aa  86.7  2e-16  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.0205277  normal  0.823307 
 
 
-
 
NC_008228  Patl_0522  two component LuxR family transcriptional regulator  31.1 
 
 
219 aa  86.3  2e-16  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_3170  two component transcriptional regulator, LuxR family protein  26.15 
 
 
227 aa  87  2e-16  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_1895  two component transcriptional regulator, LuxR family  30.99 
 
 
213 aa  86.7  2e-16  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_00712  putative regulator in two-component regulatory system ; LuxR family protein  29.65 
 
 
214 aa  86.3  3e-16  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  0.169527  n/a   
 
 
-
 
NC_013595  Sros_1684  response regulator receiver protein  35.41 
 
 
207 aa  85.9  3e-16  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.966789 
 
 
-
 
NC_011369  Rleg2_1389  two component transcriptional regulator, LuxR family  33.68 
 
 
206 aa  86.3  3e-16  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.744509  normal 
 
 
-
 
NC_010506  Swoo_2721  two component LuxR family transcriptional regulator  31.5 
 
 
219 aa  85.5  4e-16  Shewanella woodyi ATCC 51908  Bacteria  normal  hitchhiker  0.001499 
 
 
-
 
NC_011992  Dtpsy_0029  two component transcriptional regulator, LuxR family  30.26 
 
 
214 aa  85.9  4e-16  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_0011  two component LuxR family transcriptional regulator  30.26 
 
 
214 aa  85.9  4e-16  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_008228  Patl_1981  two component LuxR family transcriptional regulator  29.23 
 
 
213 aa  85.5  5e-16  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.607794  n/a   
 
 
-
 
NC_013456  VEA_002211  transcriptional regulator LuxR family  29.35 
 
 
209 aa  85.1  7e-16  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_008322  Shewmr7_1663  two component LuxR family transcriptional regulator  32 
 
 
220 aa  84.7  8e-16  Shewanella sp. MR-7  Bacteria  normal  0.0154836  unclonable  0.0000152825 
 
 
-
 
NC_010159  YpAngola_A4132  two-component system response regulator  33.67 
 
 
196 aa  84.7  9e-16  Yersinia pestis Angola  Bacteria  normal  normal  0.249835 
 
 
-
 
NC_008321  Shewmr4_1588  two component LuxR family transcriptional regulator  32 
 
 
220 aa  84.3  9e-16  Shewanella sp. MR-4  Bacteria  normal  0.0618082  normal  0.0591517 
 
 
-
 
NC_009708  YpsIP31758_4080  transcriptional regulatory protein UhpA  33.67 
 
 
196 aa  84.7  9e-16  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_010465  YPK_0081  two component LuxR family transcriptional regulator  33.17 
 
 
196 aa  84  0.000000000000001  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_013235  Namu_0487  two component transcriptional regulator, LuxR family  33.01 
 
 
215 aa  84.3  0.000000000000001  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_009632  SaurJH1_1936  response regulator receiver  30.77 
 
 
207 aa  84  0.000000000000002  Staphylococcus aureus subsp. aureus JH1  Bacteria  unclonable  0.000000150819  n/a   
 
 
-
 
NC_013131  Caci_7658  two component transcriptional regulator, LuxR family  35.12 
 
 
219 aa  83.6  0.000000000000002  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_009665  Shew185_2486  two component LuxR family transcriptional regulator  33.33 
 
 
220 aa  83.6  0.000000000000002  Shewanella baltica OS185  Bacteria  normal  0.637953  n/a   
 
 
-
 
NC_013441  Gbro_1936  regulatory protein LuxR  32.86 
 
 
218 aa  83.6  0.000000000000002  Gordonia bronchialis DSM 43247  Bacteria  normal  0.548655  n/a   
 
 
-
 
NC_011312  VSAL_I2824  transcriptional regulator, LuxR response regulator receiver  27.55 
 
 
209 aa  83.6  0.000000000000002  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_010717  PXO_02404  transcriptional regulator LuxR/uhpA family  28.21 
 
 
218 aa  84  0.000000000000002  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_3140  two component LuxR family transcriptional regulator  30.1 
 
 
220 aa  84  0.000000000000002  Shewanella sediminis HAW-EB3  Bacteria  normal  0.803361  normal  0.270175 
 
 
-
 
NC_010338  Caul_0621  two component LuxR family transcriptional regulator  31.16 
 
 
212 aa  83.2  0.000000000000002  Caulobacter sp. K31  Bacteria  normal  normal  0.881689 
 
 
-
 
NC_008577  Shewana3_1732  two component LuxR family transcriptional regulator  31.34 
 
 
220 aa  83.6  0.000000000000002  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.0049943  normal  0.183248 
 
 
-
 
NC_009052  Sbal_2493  two component LuxR family transcriptional regulator  33.33 
 
 
220 aa  83.6  0.000000000000002  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009487  SaurJH9_1902  two component LuxR family transcriptional regulator  30.77 
 
 
207 aa  84  0.000000000000002  Staphylococcus aureus subsp. aureus JH9  Bacteria  hitchhiker  0.00000041006  n/a   
 
 
-
 
NC_011663  Sbal223_1858  two component transcriptional regulator, LuxR family  33.33 
 
 
220 aa  83.2  0.000000000000003  Shewanella baltica OS223  Bacteria  decreased coverage  0.00870294  decreased coverage  0.00000000166193 
 
 
-
 
NC_009832  Spro_0132  two component LuxR family transcriptional regulator  33.16 
 
 
196 aa  83.2  0.000000000000003  Serratia proteamaculans 568  Bacteria  normal  0.401597  normal 
 
 
-
 
NC_009901  Spea_2554  two component LuxR family transcriptional regulator  31.4 
 
 
219 aa  83.2  0.000000000000003  Shewanella pealeana ATCC 700345  Bacteria  normal  0.958854  n/a   
 
 
-
 
NC_012917  PC1_2202  two component transcriptional regulator, LuxR family  29.47 
 
 
213 aa  82.4  0.000000000000004  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_007777  Francci3_3253  two component LuxR family transcriptional regulator  30.48 
 
 
213 aa  82.4  0.000000000000004  Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_009783  VIBHAR_00157  transcriptional regulator LuxR  29.35 
 
 
211 aa  82.4  0.000000000000004  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_012853  Rleg_5633  two component transcriptional regulator, LuxR family  36.45 
 
 
203 aa  82.4  0.000000000000004  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.603295  normal 
 
 
-
 
NC_008228  Patl_4028  two component LuxR family transcriptional regulator  29.5 
 
 
212 aa  82.4  0.000000000000004  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_2648  LuxR family DNA-binding response regulator  31.34 
 
 
220 aa  82  0.000000000000005  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009997  Sbal195_2606  two component LuxR family transcriptional regulator  32.34 
 
 
220 aa  82  0.000000000000005  Shewanella baltica OS195  Bacteria  hitchhiker  0.00642184  hitchhiker  0.00275886 
 
 
-
 
NC_009338  Mflv_0730  two component LuxR family transcriptional regulator  32.37 
 
 
214 aa  81.6  0.000000000000006  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.47186  normal 
 
 
-
 
NC_013947  Snas_4871  two component transcriptional regulator, LuxR family  29.56 
 
 
222 aa  81.6  0.000000000000006  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.134443  normal  0.31614 
 
 
-
 
NC_008345  Sfri_2305  two component transcriptional regulator, LuxR family protein  32.37 
 
 
220 aa  81.6  0.000000000000007  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_011071  Smal_3356  two component transcriptional regulator, LuxR family  30.26 
 
 
216 aa  81.3  0.000000000000009  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.334369  normal 
 
 
-
 
NC_011071  Smal_2340  two component transcriptional regulator, LuxR family  31.34 
 
 
217 aa  81.3  0.000000000000009  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.273151  normal 
 
 
-
 
NC_008345  Sfri_1828  two component transcriptional regulator, LuxR family protein  27.96 
 
 
216 aa  81.3  0.000000000000009  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_3763  two component LuxR family transcriptional regulator  31.96 
 
 
221 aa  81.3  0.000000000000009  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.0403461 
 
 
-
 
NC_009523  RoseRS_3278  two component LuxR family transcriptional regulator  32.47 
 
 
214 aa  80.9  0.00000000000001  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.749326 
 
 
-
 
NC_009511  Swit_1159  two component LuxR family transcriptional regulator  31.82 
 
 
209 aa  80.9  0.00000000000001  Sphingomonas wittichii RW1  Bacteria  normal  0.942847  normal  0.660482 
 
 
-
 
NC_009972  Haur_0983  two component LuxR family transcriptional regulator  29.27 
 
 
213 aa  80.9  0.00000000000001  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_010552  BamMC406_5498  two component LuxR family transcriptional regulator  33.66 
 
 
214 aa  81.3  0.00000000000001  Burkholderia ambifaria MC40-6  Bacteria  normal  hitchhiker  0.00509748 
 
 
-
 
NC_009092  Shew_1545  two component LuxR family transcriptional regulator  30.73 
 
 
219 aa  80.9  0.00000000000001  Shewanella loihica PV-4  Bacteria  normal  0.505974  normal 
 
 
-
 
NC_009439  Pmen_1291  two component LuxR family transcriptional regulator  30.54 
 
 
215 aa  79.7  0.00000000000002  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_006368  lpp2699  transmission activator LetA  28.91 
 
 
219 aa  79.7  0.00000000000002  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_006369  lpl2571  transmission activator LetA  28.91 
 
 
219 aa  80.5  0.00000000000002  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_009921  Franean1_4062  two component LuxR family transcriptional regulator  32.23 
 
 
216 aa  80.1  0.00000000000002  Frankia sp. EAN1pec  Bacteria  normal  0.0448793  normal  0.300284 
 
 
-
 
NC_007511  Bcep18194_B0026  two component LuxR family transcriptional regulator  33.17 
 
 
214 aa  80.1  0.00000000000002  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_007912  Sde_1571  XRE family transcriptional regulator  27.68 
 
 
227 aa  80.5  0.00000000000002  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_007963  Csal_0866  two component LuxR family transcriptional regulator  28.91 
 
 
220 aa  80.1  0.00000000000002  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_1867  two component LuxR family transcriptional regulator  32.18 
 
 
219 aa  80.5  0.00000000000002  Shewanella sediminis HAW-EB3  Bacteria  hitchhiker  0.00198288  hitchhiker  0.000309651 
 
 
-
 
NC_009921  Franean1_6933  two component LuxR family transcriptional regulator  32.23 
 
 
244 aa  79.7  0.00000000000002  Frankia sp. EAN1pec  Bacteria  normal  normal  0.322421 
 
 
-
 
NC_013947  Snas_3745  two component transcriptional regulator, LuxR family  30.37 
 
 
235 aa  80.5  0.00000000000002  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.627677  normal  0.255424 
 
 
-
 
NC_008726  Mvan_2836  two component LuxR family transcriptional regulator  34.52 
 
 
207 aa  80.1  0.00000000000002  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.644859  normal 
 
 
-
 
NC_011138  MADE_02155  putative regulator in two-component regulatory system ; LuxR family protein  27.5 
 
 
211 aa  80.1  0.00000000000002  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_1401  two component transcriptional regulator, LuxR family  31.6 
 
 
217 aa  79.3  0.00000000000003  Cyanothece sp. PCC 7425  Bacteria  normal  normal  0.482316 
 
 
-
 
NC_012850  Rleg_1495  two component transcriptional regulator, LuxR family  32.12 
 
 
207 aa  79.7  0.00000000000003  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.194449  normal  0.395611 
 
 
-
 
NC_009511  Swit_0694  two component LuxR family transcriptional regulator  27.94 
 
 
252 aa  79.3  0.00000000000003  Sphingomonas wittichii RW1  Bacteria  normal  0.770061  normal  0.351457 
 
 
-
 
NC_007492  Pfl01_1182  two component LuxR family transcriptional regulator  31 
 
 
216 aa  79.7  0.00000000000003  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.192356 
 
 
-
 
NC_010717  PXO_03258  two-component system regulatory protein  30.2 
 
 
222 aa  79.7  0.00000000000003  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_008148  Rxyl_0160  two component LuxR family transcriptional regulator  33.5 
 
 
212 aa  79.7  0.00000000000003  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_008391  Bamb_4946  two component LuxR family transcriptional regulator  33.17 
 
 
214 aa  79.7  0.00000000000003  Burkholderia ambifaria AMMD  Bacteria  normal  normal  0.0203352 
 
 
-
 
NC_009253  Dred_1864  two component LuxR family transcriptional regulator  29.61 
 
 
205 aa  79.3  0.00000000000003  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_009636  Smed_0164  two component LuxR family transcriptional regulator  31.13 
 
 
215 aa  79  0.00000000000004  Sinorhizobium medicae WSM419  Bacteria  normal  0.523755  normal 
 
 
-
 
NC_012803  Mlut_18530  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  33.33 
 
 
209 aa  79  0.00000000000004  Micrococcus luteus NCTC 2665  Bacteria  normal  n/a   
 
 
-
 
NC_007404  Tbd_1588  two component LuxR family transcriptional regulator  29.95 
 
 
215 aa  79  0.00000000000004  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.731747  normal  0.987016 
 
 
-
 
NC_010511  M446_2941  two component LuxR family transcriptional regulator  32.5 
 
 
251 aa  79  0.00000000000004  Methylobacterium sp. 4-46  Bacteria  normal  0.80826  normal  0.0563961 
 
 
-
 
NC_009654  Mmwyl1_3005  two component LuxR family transcriptional regulator  30.5 
 
 
217 aa  79.3  0.00000000000004  Marinomonas sp. MWYL1  Bacteria  hitchhiker  0.00815247  normal 
 
 
-
 
NC_010505  Mrad2831_2408  two component LuxR family transcriptional regulator  30.85 
 
 
219 aa  79.3  0.00000000000004  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.0426941  normal  0.882432 
 
 
-
 
NC_009012  Cthe_1267  two component LuxR family transcriptional regulator  26.98 
 
 
216 aa  79  0.00000000000005  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_0555  two component transcriptional regulator, LuxR family  30.14 
 
 
227 aa  78.6  0.00000000000006  Variovorax paradoxus S110  Bacteria  normal  0.401942  n/a   
 
 
-
 
NC_007925  RPC_4822  two component LuxR family transcriptional regulator  32.51 
 
 
223 aa  78.6  0.00000000000006  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_1766  two component LuxR family transcriptional regulator  35.94 
 
 
203 aa  78.6  0.00000000000006  Pseudomonas mendocina ymp  Bacteria  hitchhiker  0.00488071  normal 
 
 
-
 
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