More than 300 homologs were found in PanDaTox collection
for query gene Pmen_1766 on replicon NC_009439
Organism: Pseudomonas mendocina ymp



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_009439  Pmen_1766  two component LuxR family transcriptional regulator  100 
 
 		 203 aa  397  9.999999999999999e-111  Pseudomonas mendocina ymp  Bacteria  hitchhiker  0.00488071  normal  1 
 
 
-
 
NC_010086  Bmul_3716  two component LuxR family transcriptional regulator  36.36 
 
 		 209 aa  122  4e-27  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.576881  normal  0.099275 
 
 
-
 
NC_009092  Shew_1545  two component LuxR family transcriptional regulator  36.84 
 
 		 219 aa  115  6e-25  Shewanella loihica PV-4  Bacteria  normal  0.505974  normal  1 
 
 
-
 
NC_007509  Bcep18194_C7667  two component LuxR family transcriptional regulator  34.93 
 
 		 209 aa  114  1.0000000000000001e-24  Burkholderia sp. 383  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007912  Sde_1571  XRE family transcriptional regulator  34.22 
 
 		 227 aa  113  2.0000000000000002e-24  Saccharophagus degradans 2-40  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008577  Shewana3_1732  two component LuxR family transcriptional regulator  35.58 
 
 		 220 aa  113  2.0000000000000002e-24  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.0049943  normal  0.183248 
 
 
-
 
NC_009720  Xaut_0991  two component LuxR family transcriptional regulator  37.86 
 
 		 210 aa  113  2.0000000000000002e-24  Xanthobacter autotrophicus Py2  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008322  Shewmr7_1663  two component LuxR family transcriptional regulator  35.58 
 
 		 220 aa  111  7.000000000000001e-24  Shewanella sp. MR-7  Bacteria  normal  0.0154836  unclonable  0.0000152825 
 
 
-
 
NC_008321  Shewmr4_1588  two component LuxR family transcriptional regulator  35.58 
 
 		 220 aa  111  8.000000000000001e-24  Shewanella sp. MR-4  Bacteria  normal  0.0618082  normal  0.0591517 
 
 
-
 
NC_008347  Mmar10_2744  two component LuxR family transcriptional regulator  36.5 
 
 		 201 aa  110  2.0000000000000002e-23  Maricaulis maris MCS10  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009901  Spea_2554  two component LuxR family transcriptional regulator  33.81 
 
 		 219 aa  110  2.0000000000000002e-23  Shewanella pealeana ATCC 700345  Bacteria  normal  0.958854  n/a   
 
 
-
 
NC_010506  Swoo_2721  two component LuxR family transcriptional regulator  34.76 
 
 		 219 aa  108  4.0000000000000004e-23  Shewanella woodyi ATCC 51908  Bacteria  normal  1  hitchhiker  0.001499 
 
 
-
 
NC_008345  Sfri_2305  two component transcriptional regulator, LuxR family protein  35.1 
 
 		 220 aa  108  7.000000000000001e-23  Shewanella frigidimarina NCIMB 400  Bacteria  normal  1  n/a   
 
 
-
 
NC_009438  Sputcn32_2247  two component LuxR family transcriptional regulator  34.93 
 
 		 220 aa  107  8.000000000000001e-23  Shewanella putrefaciens CN-32  Bacteria  normal  0.998494  n/a   
 
 
-
 
NC_009620  Smed_3954  two component LuxR family transcriptional regulator  34.15 
 
 		 229 aa  107  9.000000000000001e-23  Sinorhizobium medicae WSM419  Bacteria  normal  1  normal  1 
 
 
-
 
NC_004347  SO_2648  LuxR family DNA-binding response regulator  35.1 
 
 		 220 aa  107  1e-22  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008347  Mmar10_2699  two component LuxR family transcriptional regulator  36.06 
 
 		 216 aa  107  1e-22  Maricaulis maris MCS10  Bacteria  normal  1  normal  0.144323 
 
 
-
 
NC_009665  Shew185_2486  two component LuxR family transcriptional regulator  34.45 
 
 		 220 aa  105  3e-22  Shewanella baltica OS185  Bacteria  normal  0.637953  n/a   
 
 
-
 
NC_009997  Sbal195_2606  two component LuxR family transcriptional regulator  34.13 
 
 		 220 aa  105  3e-22  Shewanella baltica OS195  Bacteria  hitchhiker  0.00642184  hitchhiker  0.00275886 
 
 
-
 
NC_008700  Sama_2076  response regulator receiver protein  34.13 
 
 		 238 aa  106  3e-22  Shewanella amazonensis SB2B  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013124  Afer_0180  two component transcriptional regulator, LuxR family  34.15 
 
 		 216 aa  106  3e-22  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  0.245465  n/a   
 
 
-
 
NC_009052  Sbal_2493  two component LuxR family transcriptional regulator  34.45 
 
 		 220 aa  105  3e-22  Shewanella baltica OS155  Bacteria  normal  1  n/a   
 
 
-
 
NC_011663  Sbal223_1858  two component transcriptional regulator, LuxR family  34.13 
 
 		 220 aa  105  4e-22  Shewanella baltica OS223  Bacteria  decreased coverage  0.00870294  decreased coverage  0.00000000166193 
 
 
-
 
NC_011901  Tgr7_2171  two component transcriptional regulator, LuxR family  34.74 
 
 		 227 aa  105  4e-22  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  1  n/a   
 
 
-
 
NC_009485  BBta_0852  two component LuxR family transcriptional regulator  33.17 
 
 		 224 aa  105  6e-22  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.852842  normal  0.596615 
 
 
-
 
NC_013093  Amir_0513  two component transcriptional regulator, LuxR family  37.5 
 
 		 209 aa  105  6e-22  Actinosynnema mirum DSM 43827  Bacteria  normal  0.52986  n/a   
 
 
-
 
NC_008148  Rxyl_0160  two component LuxR family transcriptional regulator  36.89 
 
 		 212 aa  104  7e-22  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  1  n/a   
 
 
-
 
NC_010524  Lcho_1574  two component LuxR family transcriptional regulator  35.55 
 
 		 219 aa  104  1e-21  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.347453 
 
 
-
 
NC_008781  Pnap_0105  two component LuxR family transcriptional regulator  37.91 
 
 		 219 aa  103  2e-21  Polaromonas naphthalenivorans CJ2  Bacteria  normal  1  normal  0.0920509 
 
 
-
 
NC_009656  PSPA7_1537  putative two-component response regulator  37.19 
 
 		 217 aa  102  3e-21  Pseudomonas aeruginosa PA7  Bacteria  normal  1  n/a   
 
 
-
 
NC_007643  Rru_A3229  two component LuxR family transcriptional regulator  34.39 
 
 		 224 aa  102  3e-21  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  1  n/a   
 
 
-
 
NC_008463  PA14_17670  LuxR family transcriptional regulator  37.19 
 
 		 217 aa  102  3e-21  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007204  Psyc_0602  nitrate/nitrite response regulator  33.85 
 
 		 219 aa  102  5e-21  Psychrobacter arcticus 273-4  Bacteria  normal  0.790372  normal  1 
 
 
-
 
NC_007974  Rmet_4854  putative two component LuxR family transcriptional regulator  35.44 
 
 		 211 aa  102  5e-21  Cupriavidus metallidurans CH34  Bacteria  normal  0.133138  normal  0.31096 
 
 
-
 
NC_007404  Tbd_2570  two component LuxR family transcriptional regulator  34.15 
 
 		 224 aa  101  6e-21  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.282998  normal  0.225314 
 
 
-
 
NC_008340  Mlg_1669  two component LuxR family transcriptional regulator  34.43 
 
 		 221 aa  101  7e-21  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013947  Snas_3745  two component transcriptional regulator, LuxR family  36.22 
 
 		 235 aa  101  7e-21  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.627677  normal  0.255424 
 
 
-
 
NC_007348  Reut_B5066  LuxR response regulator receiver  33.33 
 
 		 217 aa  100  1e-20  Ralstonia eutropha JMP134  Bacteria  normal  0.822528  n/a   
 
 
-
 
NC_008228  Patl_4028  two component LuxR family transcriptional regulator  33.17 
 
 		 212 aa  100  1e-20  Pseudoalteromonas atlantica T6c  Bacteria  normal  1  n/a   
 
 
-
 
NC_013595  Sros_1684  response regulator receiver protein  34.31 
 
 		 207 aa  100  1e-20  Streptosporangium roseum DSM 43021  Bacteria  normal  1  normal  0.966789 
 
 
-
 
NC_013525  Tter_0641  two component transcriptional regulator, LuxR family  33.82 
 
 		 1648 aa  99.8  2e-20  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_007973  Rmet_2880  two component LuxR family transcriptional regulator  34.48 
 
 		 219 aa  100  2e-20  Cupriavidus metallidurans CH34  Bacteria  normal  1  normal  0.449931 
 
 
-
 
NC_013946  Mrub_1071  two component LuxR family transcriptional regulator  34.15 
 
 		 209 aa  100  2e-20  Meiothermus ruber DSM 1279  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013530  Xcel_0606  two component transcriptional regulator, LuxR family  34.95 
 
 		 212 aa  100  2e-20  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  1  n/a   
 
 
-
 
NC_003295  RSc2455  response regulator VSRC transcription regulator protein  33.99 
 
 		 221 aa  99.8  3e-20  Ralstonia solanacearum GMI1000  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007963  Csal_0866  two component LuxR family transcriptional regulator  33.5 
 
 		 220 aa  99.4  3e-20  Chromohalobacter salexigens DSM 3043  Bacteria  normal  1  n/a   
 
 
-
 
NC_013385  Adeg_1034  two component transcriptional regulator, LuxR family  31.58 
 
 		 213 aa  99.4  3e-20  Ammonifex degensii KC4  Bacteria  normal  1  n/a   
 
 
-
 
NC_013947  Snas_1903  two component transcriptional regulator, LuxR family  33.18 
 
 		 225 aa  99  5e-20  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.202425  normal  0.182857 
 
 
-
 
NC_009952  Dshi_1894  putative response regulator receiver protein  33.17 
 
 		 204 aa  98.6  5e-20  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.761861  normal  0.0769356 
 
 
-
 
NC_002947  PP_1635  LuxR family two component transcriptional regulator  34.17 
 
 		 216 aa  98.6  6e-20  Pseudomonas putida KT2440  Bacteria  normal  1  normal  0.0994806 
 
 
-
 
NC_009512  Pput_4082  two component LuxR family transcriptional regulator  34.17 
 
 		 216 aa  98.6  6e-20  Pseudomonas putida F1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009428  Rsph17025_1676  two component LuxR family transcriptional regulator  32.86 
 
 		 210 aa  98.6  6e-20  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.123322  normal  1 
 
 
-
 
NC_007492  Pfl01_1182  two component LuxR family transcriptional regulator  33.16 
 
 		 216 aa  98.2  7e-20  Pseudomonas fluorescens Pf0-1  Bacteria  normal  1  normal  0.192356 
 
 
-
 
NC_009455  DehaBAV1_0632  two component LuxR family transcriptional regulator  29.25 
 
 		 224 aa  98.2  7e-20  Dehalococcoides sp. BAV1  Bacteria  hitchhiker  0.00385785  n/a   
 
 
-
 
NC_009921  Franean1_5840  two component LuxR family transcriptional regulator  29.25 
 
 		 237 aa  98.2  7e-20  Frankia sp. EAN1pec  Bacteria  normal  0.0206065  normal  0.380036 
 
 
-
 
NC_012856  Rpic12D_2334  two component transcriptional regulator, LuxR family  33.5 
 
 		 221 aa  97.8  8e-20  Ralstonia pickettii 12D  Bacteria  normal  0.477601  normal  0.267999 
 
 
-
 
NC_007347  Reut_A2742  LuxR response regulator receiver  34.48 
 
 		 219 aa  98.2  8e-20  Ralstonia eutropha JMP134  Bacteria  normal  1  n/a   
 
 
-
 
NC_012669  Bcav_3541  two component transcriptional regulator, LuxR family  32.35 
 
 		 211 aa  97.8  8e-20  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.485125  normal  0.513005 
 
 
-
 
NC_007493  RSP_2591  two component LuxR family transcriptional regulator  34.34 
 
 		 235 aa  97.8  8e-20  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.211381  n/a   
 
 
-
 
NC_007964  Nham_0273  two component LuxR family transcriptional regulator  35.81 
 
 		 231 aa  98.2  8e-20  Nitrobacter hamburgensis X14  Bacteria  normal  1  n/a   
 
 
-
 
NC_010682  Rpic_2723  two component transcriptional regulator, LuxR family  33.5 
 
 		 221 aa  97.8  8e-20  Ralstonia pickettii 12J  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007005  Psyr_1384  LuxR response regulator receiver  35.35 
 
 		 215 aa  97.8  9e-20  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010571  Oter_2496  two component LuxR family transcriptional regulator  33.66 
 
 		 212 aa  97.8  9e-20  Opitutus terrae PB90-1  Bacteria  normal  1  normal  0.996792 
 
 
-
 
NC_009831  Ssed_1867  two component LuxR family transcriptional regulator  32.06 
 
 		 219 aa  97.4  1e-19  Shewanella sediminis HAW-EB3  Bacteria  hitchhiker  0.00198288  hitchhiker  0.000309651 
 
 
-
 
NC_008044  TM1040_0960  two component LuxR family transcriptional regulator  34.47 
 
 		 214 aa  97.4  1e-19  Ruegeria sp. TM1040  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013131  Caci_0175  two component transcriptional regulator, LuxR family  34.12 
 
 		 222 aa  97.4  1e-19  Catenulispora acidiphila DSM 44928  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010501  PputW619_4024  two component LuxR family transcriptional regulator  34.17 
 
 		 216 aa  97.4  1e-19  Pseudomonas putida W619  Bacteria  normal  1  hitchhiker  0.00000136895 
 
 
-
 
NC_004578  PSPTO_4027  DNA-binding response regulator, LuxR family  34.83 
 
 		 215 aa  96.7  2e-19  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  1  n/a   
 
 
-
 
NC_006348  BMA1736  DNA-binding response regulator NarL  30.63 
 
 		 233 aa  96.7  2e-19  Burkholderia mallei ATCC 23344  Bacteria  normal  1  n/a   
 
 
-
 
NC_007298  Daro_0264  two component LuxR family transcriptional regulator  35.07 
 
 		 221 aa  96.7  2e-19  Dechloromonas aromatica RCB  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009664  Krad_3810  two component transcriptional regulator, LuxR family  28.04 
 
 		 236 aa  97.1  2e-19  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.225059  normal  0.0261757 
 
 
-
 
NC_007434  BURPS1710b_2764  DNA-binding response regulator NarL  30.63 
 
 		 233 aa  96.7  2e-19  Burkholderia pseudomallei 1710b  Bacteria  normal  0.922757  n/a   
 
 
-
 
NC_010571  Oter_1284  two component LuxR family transcriptional regulator  35.12 
 
 		 209 aa  97.1  2e-19  Opitutus terrae PB90-1  Bacteria  normal  0.479266  normal  1 
 
 
-
 
NC_007651  BTH_I1849  DNA-binding response regulator NarL  30.63 
 
 		 233 aa  97.1  2e-19  Burkholderia thailandensis E264  Bacteria  normal  1  n/a   
 
 
-
 
NC_007777  Francci3_1039  two component LuxR family transcriptional regulator  30.73 
 
 		 238 aa  96.7  2e-19  Frankia sp. CcI3  Bacteria  normal  1  normal  0.135118 
 
 
-
 
NC_013947  Snas_2579  two component transcriptional regulator, LuxR family  33.17 
 
 		 213 aa  97.1  2e-19  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  1  normal  0.0500394 
 
 
-
 
NC_010322  PputGB1_1237  two component LuxR family transcriptional regulator  34.17 
 
 		 216 aa  97.1  2e-19  Pseudomonas putida GB-1  Bacteria  normal  1  hitchhiker  0.00000000317123 
 
 
-
 
NC_012560  Avin_38490  Response regulator, LuxR family  35.64 
 
 		 215 aa  97.1  2e-19  Azotobacter vinelandii DJ  Bacteria  normal  1  n/a   
 
 
-
 
NC_008578  Acel_1760  two component LuxR family transcriptional regulator  31.16 
 
 		 303 aa  97.1  2e-19  Acidothermus cellulolyticus 11B  Bacteria  normal  1  normal  0.887336 
 
 
-
 
NC_008686  Pden_2354  two component LuxR family transcriptional regulator  34.65 
 
 		 236 aa  97.1  2e-19  Paracoccus denitrificans PD1222  Bacteria  normal  0.399998  normal  1 
 
 
-
 
NC_008785  BMASAVP1_A2246  DNA-binding response regulator NarL  30.63 
 
 		 233 aa  96.7  2e-19  Burkholderia mallei SAVP1  Bacteria  normal  1  n/a   
 
 
-
 
NC_008836  BMA10229_A3072  DNA-binding response regulator NarL  30.63 
 
 		 233 aa  96.7  2e-19  Burkholderia mallei NCTC 10229  Bacteria  normal  1  n/a   
 
 
-
 
NC_009074  BURPS668_2630  nitrate/nitrite response regulator protein NarL  30.63 
 
 		 233 aa  96.7  2e-19  Burkholderia pseudomallei 668  Bacteria  normal  0.14617  n/a   
 
 
-
 
NC_009076  BURPS1106A_2686  nitrate/nitrite response regulator protein NarL  30.63 
 
 		 233 aa  96.7  2e-19  Burkholderia pseudomallei 1106a  Bacteria  normal  1  n/a   
 
 
-
 
NC_009080  BMA10247_1519  DNA-binding response regulator NarL  30.63 
 
 		 233 aa  96.7  2e-19  Burkholderia mallei NCTC 10247  Bacteria  normal  0.281442  n/a   
 
 
-
 
NC_007777  Francci3_0765  two component LuxR family transcriptional regulator  28.3 
 
 		 237 aa  96.3  3e-19  Frankia sp. CcI3  Bacteria  normal  0.272345  normal  1 
 
 
-
 
NC_008044  TM1040_0828  two component LuxR family transcriptional regulator  33.97 
 
 		 204 aa  96.3  3e-19  Ruegeria sp. TM1040  Bacteria  hitchhiker  0.00513824  normal  0.360671 
 
 
-
 
NC_013595  Sros_4744  response regulator receiver protein  33.83 
 
 		 209 aa  96.3  3e-19  Streptosporangium roseum DSM 43021  Bacteria  normal  0.620464  normal  0.690137 
 
 
-
 
NC_010001  Cphy_3936  two component LuxR family transcriptional regulator  28.57 
 
 		 213 aa  96.3  3e-19  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.00507176  n/a   
 
 
-
 
NC_009430  Rsph17025_4184  hypothetical protein  32.8 
 
 		 207 aa  96.3  3e-19  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.400045  normal  0.380291 
 
 
-
 
NC_009049  Rsph17029_1249  two component LuxR family transcriptional regulator  33.84 
 
 		 235 aa  96.3  3e-19  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009972  Haur_1600  two component LuxR family transcriptional regulator  30.88 
 
 		 207 aa  95.9  4e-19  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  1  n/a   
 
 
-
 
NC_013510  Tcur_1651  two component transcriptional regulator, LuxR family  32.7 
 
 		 218 aa  95.9  4e-19  Thermomonospora curvata DSM 43183  Bacteria  hitchhiker  0.000163278  n/a   
 
 
-
 
NC_008825  Mpe_A1151  two-component response regulator  32.03 
 
 		 248 aa  95.9  4e-19  Methylibium petroleiphilum PM1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011004  Rpal_0920  two component transcriptional regulator, LuxR family  33.65 
 
 		 225 aa  95.5  5e-19  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.491034  n/a   
 
 
-
 
NC_009921  Franean1_5512  two component LuxR family transcriptional regulator  30.41 
 
 		 250 aa  95.1  6e-19  Frankia sp. EAN1pec  Bacteria  normal  1  normal  0.631776 
 
 
-
 
NC_014210  Ndas_0346  two component transcriptional regulator, LuxR family  33.17 
 
 		 210 aa  95.1  6e-19  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.0205277  normal  0.823307 
 
 
-
 
NC_012791  Vapar_0555  two component transcriptional regulator, LuxR family  32.27 
 
 		 227 aa  94.7  8e-19  Variovorax paradoxus S110  Bacteria  normal  0.401942  n/a   
 
 
-
 
NC_013510  Tcur_4038  two component transcriptional regulator, LuxR family  30.23 
 
 		 253 aa  94.7  8e-19  Thermomonospora curvata DSM 43183  Bacteria  normal  1  n/a   
 
 
-
 
NC_002936  DET0663  LuxR family DNA-binding response regulator  28.77 
 
 		 224 aa  94.4  9e-19  Dehalococcoides ethenogenes 195  Bacteria  normal  1  n/a   
 
 
-
 
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