| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1766 |
|---|
| Symbol | |
|---|
| ID | 5109346 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 1940767 |
|---|
| End bp | 1941378 |
|---|
| Gene Length | 612 bp |
|---|
| Protein Length | 203 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 640502998 |
|---|
| Product | two component LuxR family transcriptional regulator |
|---|
| Protein accession | YP_001187262 |
|---|
| Protein GI | 146306797 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.00488071 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 41 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTGCCC TCTGCACCAC CCTGCCCGAC CACCTGCACC TGCTGCTGGT GGACGACCAC
CGGATCTTCC TCGACGGCCT GGCCCTGGCC CTGGCGCCAC TCGCCCGTGA CCTGCAGATC
GACACCGCGC AGAACGCCGC CGAAGCGGAG CAGCGCCTGC AGCAGCAGAC TTACGACCTG
ATCCTGCTCG ACCTGCGCCT GCCCGACGAA CCGGGACTGG AACTGCTGCA GCGCTGGCTG
GCGCGCGGCG AAAGCACGCC GGTGGCCATC CTCAGCGCCA GCGACTCGGC CGTCGATGCC
CAGGCCGCAC TGGCCGCCGG CGCACTCGGC TTCATTCCCA AGAGTGCCGA CGGCAAGGCC
CTGCGCCAGG CCGTAACGCG CGTGCTGCTG GGCGAGACCC TGCCGGCGCC GAGCAGCACC
TCACCGCTGA CGCCCAGGCA ACTGGAAATT CTGCAATTGC TGGCCGAAGG CCTGCCGAAC
AAGGCCATCA GCCGTCAGCT GGGCCTGGCT GAAGACACGG TGAAAACCCA CCTCAAGGCG
CTGTTCGAAA CCTTCGCCGT ACACACCCGC ACCGCCTGCG TCAGCGCCGC CCGCCAGCGC
GGCTGGCTGT AA
|
|---|
| Protein sequence | MTALCTTLPD HLHLLLVDDH RIFLDGLALA LAPLARDLQI DTAQNAAEAE QRLQQQTYDL
ILLDLRLPDE PGLELLQRWL ARGESTPVAI LSASDSAVDA QAALAAGALG FIPKSADGKA
LRQAVTRVLL GETLPAPSST SPLTPRQLEI LQLLAEGLPN KAISRQLGLA EDTVKTHLKA
LFETFAVHTR TACVSAARQR GWL
|
|---|
| |