More than 300 homologs were found in PanDaTox collection
for query gene BBta_3185 on replicon NC_009485
Organism: Bradyrhizobium sp. BTAi1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009485  BBta_3185  ABC transporter permease  100 
 
 
271 aa  519  1e-146  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_7195  ABC transporter permease  53.61 
 
 
271 aa  275  7e-73  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_1250  binding-protein-dependent transport systems inner membrane component  55.68 
 
 
272 aa  263  2e-69  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_4045  binding-protein-dependent transport systems inner membrane component  55.7 
 
 
274 aa  252  4.0000000000000004e-66  Methylobacterium sp. 4-46  Bacteria  normal  0.329946  normal 
 
 
-
 
NC_011981  Avi_7601  ABC transporter membrane spanning protein  37.45 
 
 
273 aa  173  1.9999999999999998e-42  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_012848  Rleg_5372  binding-protein-dependent transport systems inner membrane component  41.27 
 
 
273 aa  168  9e-41  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.736363  normal 
 
 
-
 
NC_011368  Rleg2_5132  binding-protein-dependent transport systems inner membrane component  39.68 
 
 
272 aa  155  5.0000000000000005e-37  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_010625  Bphy_6628  binding-protein-dependent transport systems inner membrane component  35.8 
 
 
264 aa  154  1e-36  Burkholderia phymatum STM815  Bacteria  normal  0.381273  normal 
 
 
-
 
NC_007952  Bxe_B0748  polyamine/opine/phosphonate ABC transporter inner membrane protein  35.68 
 
 
264 aa  152  7e-36  Burkholderia xenovorans LB400  Bacteria  normal  0.467059  normal 
 
 
-
 
NC_008254  Meso_3746  binding-protein-dependent transport systems inner membrane component  30.86 
 
 
268 aa  150  2e-35  Chelativorans sp. BNC1  Bacteria  normal  0.475602  n/a   
 
 
-
 
NC_010676  Bphyt_4429  binding-protein-dependent transport systems inner membrane component  35.68 
 
 
264 aa  149  4e-35  Burkholderia phytofirmans PsJN  Bacteria  normal  0.186422  normal  0.676109 
 
 
-
 
NC_009668  Oant_4153  binding-protein-dependent transport systems inner membrane component  37.6 
 
 
263 aa  148  7e-35  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.829399  n/a   
 
 
-
 
NC_009485  BBta_2420  putative ABC spermidine/putrescine transporter permease protein  37.75 
 
 
281 aa  148  8e-35  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.814446  normal 
 
 
-
 
NC_008061  Bcen_4730  binding-protein-dependent transport systems inner membrane component  35.8 
 
 
264 aa  147  1.0000000000000001e-34  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.293753  n/a   
 
 
-
 
NC_008543  Bcen2424_3633  binding-protein-dependent transport systems inner membrane component  35.8 
 
 
264 aa  147  1.0000000000000001e-34  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.332864 
 
 
-
 
NC_010552  BamMC406_3539  binding-protein-dependent transport systems inner membrane component  35.8 
 
 
264 aa  147  2.0000000000000003e-34  Burkholderia ambifaria MC40-6  Bacteria  normal  0.447694  normal 
 
 
-
 
NC_008786  Veis_0203  binding-protein-dependent transport systems inner membrane component  36.8 
 
 
265 aa  147  2.0000000000000003e-34  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.973641  normal  0.52762 
 
 
-
 
NC_008391  Bamb_5374  binding-protein-dependent transport systems inner membrane component  35.8 
 
 
264 aa  147  2.0000000000000003e-34  Burkholderia ambifaria AMMD  Bacteria  normal  normal  0.628457 
 
 
-
 
NC_012917  PC1_2228  binding-protein-dependent transport systems inner membrane component  35.94 
 
 
272 aa  146  3e-34  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_010465  YPK_1338  binding-protein-dependent transport systems inner membrane component  38.49 
 
 
282 aa  146  4.0000000000000006e-34  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_008688  Pden_5050  binding-protein-dependent transport systems inner membrane component  35.81 
 
 
262 aa  146  4.0000000000000006e-34  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_009708  YpsIP31758_1221  spermidine/putrescine ABC transporter, permease protein  38.49 
 
 
282 aa  146  4.0000000000000006e-34  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A3109  spermidine/putrescine ABC transporter permease  38.49 
 
 
282 aa  146  4.0000000000000006e-34  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_013421  Pecwa_2541  binding-protein-dependent transport systems inner membrane component  35.55 
 
 
272 aa  146  4.0000000000000006e-34  Pectobacterium wasabiae WPP163  Bacteria  normal  0.180027  n/a   
 
 
-
 
NC_010086  Bmul_5060  binding-protein-dependent transport systems inner membrane component  35.39 
 
 
264 aa  145  5e-34  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal  0.183233 
 
 
-
 
NC_004578  PSPTO_2522  ABC transporter, permease protein  32.92 
 
 
264 aa  145  5e-34  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_009050  Rsph17029_3039  binding-protein-dependent transport systems inner membrane component  35.66 
 
 
264 aa  144  1e-33  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.645477  normal 
 
 
-
 
NC_009668  Oant_4437  binding-protein-dependent transport systems inner membrane component  32.1 
 
 
264 aa  144  1e-33  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_007494  RSP_3393  ABC opine/polyamine transporter, inner membrane subunit  35.66 
 
 
264 aa  144  1e-33  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.381224  n/a   
 
 
-
 
NC_012791  Vapar_0306  binding-protein-dependent transport systems inner membrane component  34.54 
 
 
264 aa  144  1e-33  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_2333  binding-protein dependent transport system inner membrane protein  32.51 
 
 
264 aa  144  2e-33  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.161709  normal  0.782854 
 
 
-
 
NC_009720  Xaut_0865  binding-protein-dependent transport systems inner membrane component  36.44 
 
 
264 aa  144  2e-33  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_008261  CPF_1479  ABC transporter, permease protein  31.67 
 
 
260 aa  144  2e-33  Clostridium perfringens ATCC 13124  Bacteria  normal  0.0195961  n/a   
 
 
-
 
NC_011982  Avi_8304  ABC transporter  33.88 
 
 
265 aa  143  3e-33  Agrobacterium vitis S4  Bacteria  normal  0.0178234  n/a   
 
 
-
 
NC_012912  Dd1591_1871  binding-protein-dependent transport systems inner membrane component  36.84 
 
 
278 aa  142  5e-33  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_3945  binding-protein-dependent transport systems inner membrane component  34.44 
 
 
264 aa  142  5e-33  Polaromonas sp. JS666  Bacteria  normal  0.334886  normal  0.870267 
 
 
-
 
NC_004311  BRA1105  polyamine ABC transporter, permease protein  32.08 
 
 
267 aa  141  9.999999999999999e-33  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_2089  binding-protein-dependent transport systems inner membrane component  34.1 
 
 
268 aa  141  9.999999999999999e-33  Pseudomonas putida GB-1  Bacteria  normal  0.217099  normal 
 
 
-
 
NC_010501  PputW619_1933  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
269 aa  141  9.999999999999999e-33  Pseudomonas putida W619  Bacteria  normal  normal  0.0161656 
 
 
-
 
NC_002947  PP_3816  binding-protein-dependent transport systems inner membrane component  33.72 
 
 
269 aa  140  1.9999999999999998e-32  Pseudomonas putida KT2440  Bacteria  decreased coverage  0.0037178  normal  0.4746 
 
 
-
 
NC_009485  BBta_1834  ABC transporter, permease protein  33.74 
 
 
269 aa  140  1.9999999999999998e-32  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.632575 
 
 
-
 
NC_009512  Pput_1953  binding-protein-dependent transport systems inner membrane component  33.72 
 
 
268 aa  140  1.9999999999999998e-32  Pseudomonas putida F1  Bacteria  normal  0.911704  normal 
 
 
-
 
NC_007908  Rfer_0887  binding-protein-dependent transport systems inner membrane component  34.44 
 
 
263 aa  140  1.9999999999999998e-32  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_0756  binding-protein-dependent transport systems inner membrane component  34.54 
 
 
264 aa  139  3.9999999999999997e-32  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.533361  normal 
 
 
-
 
NC_010676  Bphyt_6885  binding-protein-dependent transport systems inner membrane component  35.38 
 
 
279 aa  139  4.999999999999999e-32  Burkholderia phytofirmans PsJN  Bacteria  normal  0.471707  normal  0.190136 
 
 
-
 
NC_009439  Pmen_4000  binding-protein-dependent transport systems inner membrane component  36.25 
 
 
275 aa  138  8.999999999999999e-32  Pseudomonas mendocina ymp  Bacteria  normal  0.360042  normal 
 
 
-
 
NC_011989  Avi_2708  ABC transporter membrane spanning protein (polyamine)  33.33 
 
 
264 aa  138  1e-31  Agrobacterium vitis S4  Bacteria  normal  0.319241  n/a   
 
 
-
 
NC_010511  M446_3856  binding-protein-dependent transport systems inner membrane component  37.55 
 
 
270 aa  138  1e-31  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_3449  binding-protein-dependent transport systems inner membrane component  35.51 
 
 
269 aa  138  1e-31  Pseudomonas mendocina ymp  Bacteria  normal  normal  0.413551 
 
 
-
 
NC_007952  Bxe_B2930  spermidine/putrescine ABC transporter inner membrane protein  35.29 
 
 
279 aa  137  2e-31  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_008254  Meso_2370  binding-protein-dependent transport systems inner membrane component  32.22 
 
 
274 aa  136  3.0000000000000003e-31  Chelativorans sp. BNC1  Bacteria  normal  0.560014  n/a   
 
 
-
 
NC_010623  Bphy_4324  binding-protein-dependent transport systems inner membrane component  35.29 
 
 
279 aa  136  4e-31  Burkholderia phymatum STM815  Bacteria  normal  normal  0.644272 
 
 
-
 
NC_007492  Pfl01_3243  binding-protein dependent transport system inner membrane protein  32.57 
 
 
269 aa  134  9.999999999999999e-31  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.796458 
 
 
-
 
NC_007650  BTH_II0645  polyamine ABC transporter, permease protein  36.51 
 
 
279 aa  134  1.9999999999999998e-30  Burkholderia thailandensis E264  Bacteria  normal  0.637437  n/a   
 
 
-
 
NC_008786  Veis_4322  binding-protein-dependent transport systems inner membrane component  33.61 
 
 
265 aa  134  1.9999999999999998e-30  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.102499  normal 
 
 
-
 
NC_009075  BURPS668_A2498  putative polyamine ABC transporter, permease protein  36.1 
 
 
289 aa  132  5e-30  Burkholderia pseudomallei 668  Bacteria  normal  0.633965  n/a   
 
 
-
 
NC_009078  BURPS1106A_A2359  putative polyamine ABC transporter, permease protein  36.1 
 
 
289 aa  132  5e-30  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_0427  binding-protein-dependent transport systems inner membrane component  37.5 
 
 
274 aa  132  5e-30  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_007435  BURPS1710b_A0812  polyamine ABC transporter, permease protein  36.1 
 
 
279 aa  132  6e-30  Burkholderia pseudomallei 1710b  Bacteria  normal  0.610714  n/a   
 
 
-
 
NC_009621  Smed_6247  binding-protein-dependent transport systems inner membrane component  34.42 
 
 
266 aa  132  6.999999999999999e-30  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.487966 
 
 
-
 
NC_010681  Bphyt_2374  binding-protein-dependent transport systems inner membrane component  30.92 
 
 
270 aa  132  6.999999999999999e-30  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_013456  VEA_003666  probable permease of ABC transporter  32.82 
 
 
282 aa  132  6.999999999999999e-30  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_008528  OEOE_1465  spermidine/putrescine ABC transporter permease protein  31.85 
 
 
262 aa  132  7.999999999999999e-30  Oenococcus oeni PSU-1  Bacteria  normal  n/a   
 
 
-
 
NC_011368  Rleg2_5591  binding-protein-dependent transport systems inner membrane component  34.88 
 
 
266 aa  132  9e-30  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_007953  Bxe_C1236  ABC spermidine/putrescine transporter, inner membrane subunit  31.95 
 
 
267 aa  132  9e-30  Burkholderia xenovorans LB400  Bacteria  normal  0.362839  normal 
 
 
-
 
NC_008786  Veis_4689  binding-protein-dependent transport systems inner membrane component  34.27 
 
 
276 aa  131  1.0000000000000001e-29  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.363302  normal 
 
 
-
 
NC_013739  Cwoe_0569  binding-protein-dependent transport systems inner membrane component  37.38 
 
 
268 aa  130  2.0000000000000002e-29  Conexibacter woesei DSM 14684  Bacteria  normal  0.0474626  normal 
 
 
-
 
NC_009485  BBta_6500  ABC transporter permease  36.51 
 
 
264 aa  130  2.0000000000000002e-29  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.537768  normal 
 
 
-
 
NC_010322  PputGB1_0445  binding-protein-dependent transport systems inner membrane component  36.89 
 
 
275 aa  130  2.0000000000000002e-29  Pseudomonas putida GB-1  Bacteria  normal  normal  0.355956 
 
 
-
 
NC_007802  Jann_3236  binding-protein-dependent transport systems inner membrane component  33.88 
 
 
262 aa  129  3e-29  Jannaschia sp. CCS1  Bacteria  normal  0.0387101  normal  0.554966 
 
 
-
 
NC_007948  Bpro_4417  binding-protein-dependent transport systems inner membrane component  32.93 
 
 
268 aa  130  3e-29  Polaromonas sp. JS666  Bacteria  normal  0.303148  normal 
 
 
-
 
NC_010676  Bphyt_6540  binding-protein-dependent transport systems inner membrane component  32.35 
 
 
270 aa  129  4.0000000000000003e-29  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.199847 
 
 
-
 
NC_007958  RPD_1033  binding-protein-dependent transport systems inner membrane component  36.51 
 
 
550 aa  129  4.0000000000000003e-29  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.957073  normal 
 
 
-
 
NC_008254  Meso_1862  binding-protein-dependent transport systems inner membrane component  34.04 
 
 
272 aa  129  4.0000000000000003e-29  Chelativorans sp. BNC1  Bacteria  normal  0.148364  n/a   
 
 
-
 
NC_007948  Bpro_4377  binding-protein-dependent transport systems inner membrane component  34.71 
 
 
265 aa  129  5.0000000000000004e-29  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_010087  Bmul_5431  binding-protein-dependent transport systems inner membrane component  36.32 
 
 
278 aa  129  6e-29  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.708074  normal  0.0941502 
 
 
-
 
NC_010086  Bmul_4662  binding-protein-dependent transport systems inner membrane component  36.32 
 
 
278 aa  129  6e-29  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.445054  normal 
 
 
-
 
NC_007492  Pfl01_5122  binding-protein dependent transport system inner membrane protein  36.89 
 
 
274 aa  129  6e-29  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.026759  normal  0.638371 
 
 
-
 
NC_007948  Bpro_2916  binding-protein-dependent transport systems inner membrane component  36.55 
 
 
274 aa  129  6e-29  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_0414  binding-protein-dependent transport systems inner membrane component  38.32 
 
 
275 aa  129  7.000000000000001e-29  Pseudomonas putida KT2440  Bacteria  normal  0.958357  normal 
 
 
-
 
NC_010322  PputGB1_3207  binding-protein-dependent transport systems inner membrane component  32.1 
 
 
264 aa  129  7.000000000000001e-29  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_0448  binding-protein-dependent transport systems inner membrane component  38.32 
 
 
275 aa  129  7.000000000000001e-29  Pseudomonas putida F1  Bacteria  normal  normal  0.439073 
 
 
-
 
NC_012850  Rleg_1647  binding-protein-dependent transport systems inner membrane component  33.75 
 
 
262 aa  129  7.000000000000001e-29  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.29435 
 
 
-
 
NC_011368  Rleg2_4995  binding-protein-dependent transport systems inner membrane component  31.65 
 
 
265 aa  128  8.000000000000001e-29  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.887799  normal 
 
 
-
 
NC_014210  Ndas_1923  binding-protein-dependent transport systems inner membrane component  33.6 
 
 
262 aa  128  8.000000000000001e-29  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.438917 
 
 
-
 
NC_007005  Psyr_2399  binding-protein dependent transport system inner membrane protein  32.22 
 
 
271 aa  128  9.000000000000001e-29  Pseudomonas syringae pv. syringae B728a  Bacteria  decreased coverage  0.00651767  normal  0.388943 
 
 
-
 
NC_012854  Rleg_6542  binding-protein-dependent transport systems inner membrane component  32.77 
 
 
266 aa  128  1.0000000000000001e-28  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.208097 
 
 
-
 
NC_007643  Rru_A2045  binding-protein dependent transport system inner membrane protein  32.11 
 
 
275 aa  127  1.0000000000000001e-28  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.586316  n/a   
 
 
-
 
NC_008786  Veis_4042  binding-protein-dependent transport systems inner membrane component  36.19 
 
 
278 aa  128  1.0000000000000001e-28  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_008686  Pden_0469  binding-protein-dependent transport systems inner membrane component  34.63 
 
 
261 aa  127  1.0000000000000001e-28  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_010552  BamMC406_3815  binding-protein-dependent transport systems inner membrane component  35.47 
 
 
281 aa  127  2.0000000000000002e-28  Burkholderia ambifaria MC40-6  Bacteria  normal  0.723291  normal 
 
 
-
 
NC_011988  Avi_6091  ABC transporter membrane spanning protein (polyamine)  33.63 
 
 
266 aa  127  2.0000000000000002e-28  Agrobacterium vitis S4  Bacteria  normal  0.417915  n/a   
 
 
-
 
NC_007434  BURPS1710b_2209  putrescine ABC transporter permease  35.59 
 
 
264 aa  127  3e-28  Burkholderia pseudomallei 1710b  Bacteria  normal  0.052298  n/a   
 
 
-
 
NC_010511  M446_3864  binding-protein-dependent transport systems inner membrane component  31.1 
 
 
261 aa  126  3e-28  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_4788  binding-protein-dependent transport systems inner membrane component  36.96 
 
 
275 aa  127  3e-28  Pseudomonas putida W619  Bacteria  normal  normal  0.776443 
 
 
-
 
NC_007511  Bcep18194_B2167  ABC spermidine/putrescine transporter, inner membrane subunit  35.47 
 
 
278 aa  126  3e-28  Burkholderia sp. 383  Bacteria  hitchhiker  0.00407242  normal 
 
 
-
 
NC_012791  Vapar_4699  binding-protein-dependent transport systems inner membrane component  35.38 
 
 
272 aa  127  3e-28  Variovorax paradoxus S110  Bacteria  normal  0.607966  n/a   
 
 
-
 
NC_007948  Bpro_4359  binding-protein-dependent transport systems inner membrane component  34.05 
 
 
591 aa  126  3e-28  Polaromonas sp. JS666  Bacteria  normal  0.184868  normal  0.311507 
 
 
-
 
NC_007952  Bxe_B2705  spermidine/putrescine ABC transporter inner membrane protein  30.2 
 
 
265 aa  126  3e-28  Burkholderia xenovorans LB400  Bacteria  normal  0.628706  normal 
 
 
-
 
NC_008688  Pden_4602  binding-protein-dependent transport systems inner membrane component  35.59 
 
 
591 aa  126  3e-28  Paracoccus denitrificans PD1222  Bacteria  normal  0.621124  normal 
 
 
-
 
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