Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_6247 |
Symbol | |
ID | 5320549 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009621 |
Strand | - |
Start bp | 1167833 |
End bp | 1168633 |
Gene Length | 801 bp |
Protein Length | 266 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 640777847 |
Product | binding-protein-dependent transport systems inner membrane component |
Protein accession | YP_001314779 |
Protein GI | 150378184 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1177] ABC-type spermidine/putrescine transport system, permease component II |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 0.487966 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTCCTGA ATTTCGACCG TCTGGGCTGG TGGAAGCTCG TTCTCATCGG CATCACGTTG CTGACAACTG CCTTCCTGCT CCTCCCCATC CTATTCATAG CGGCACTCTC CTTCGGTTCG TCGCAATGGC TAATATTCCC GCCGCCCGGT TGGACGCTCA GGTGGTACCA GGAGCTACTC GAAGATCCCC GTTGGCTGGA CTCCGCCTGG ACGAGCTTCC GCATCGCAAT CATCGTTACG GTGCTGTCGG TCCTTCTCGG TCTAGTCACT TCTTTCGGTC TGAACCGCGG GCGGTTCTTG TTTCGGGAAG CGTTGAAGGC GCTATTTCTG ACGCCGATGA TCCTGCCCGT CGTCGTGCTA GCCGTGGCGC TATACGCCTT CTTCCTGCAG ATCGGTCTCA ATGGAACCCT CACCGGCTTC GTCATTTCCC ATCTGGTGCT GGCACTGCCG TTCTCAATCT TGTCGATCAC AAATGCGCTC GAGGGCTTTG ATAAGTCGAT TGAGGATGCC GCCGTTCTGT GCGGCGCTTC GCCTTTCGAA GCCAAAATCC GTGTGACGCT GCCGGCCATC AGCCACGGCG TCTTCTCAGC GGCAATATTT TCCTTCCTCA CCTCTTGGGA CGAAGTGGTC GTCGCGATTT TCATGGCGAG CCCGACGCTT CAGACGCTTC CCGTCAAGGT TTGGTCGACC TTGCGCCAGG ATTTAACGCC GGTCGTTGCC GCCGCCTCCA CGCTTCTCAT CCTCTTGACA GTACTTTTGA TGGTGCTCGT CGCCATCGTC CGTAAAGGAT TAAAATCATG A
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Protein sequence | MLLNFDRLGW WKLVLIGITL LTTAFLLLPI LFIAALSFGS SQWLIFPPPG WTLRWYQELL EDPRWLDSAW TSFRIAIIVT VLSVLLGLVT SFGLNRGRFL FREALKALFL TPMILPVVVL AVALYAFFLQ IGLNGTLTGF VISHLVLALP FSILSITNAL EGFDKSIEDA AVLCGASPFE AKIRVTLPAI SHGVFSAAIF SFLTSWDEVV VAIFMASPTL QTLPVKVWST LRQDLTPVVA AASTLLILLT VLLMVLVAIV RKGLKS
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