| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_3815 |
|---|
| Symbol | |
|---|
| ID | 6180400 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010552 |
|---|
| Strand | + |
|---|
| Start bp | 805037 |
|---|
| End bp | 805882 |
|---|
| Gene Length | 846 bp |
|---|
| Protein Length | 281 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641683586 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_001810498 |
|---|
| Protein GI | 172062847 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1177] ABC-type spermidine/putrescine transport system, permease component II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.723291 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGACCA TGAAACTCGC CAGGCCGCTG TTCGCGCCGC ACATGTCGTT CGTCGAACGC
GCGTGGTATG TCGCGCTGCG CGTACTCGTC GTGCTGACGC TGCTGTACCT GATCCTGCCG
GTGCTCGCGA TCGTGCCGTT GTCGTTCTCG TCGAGCACGT TCCTCGTCTA TCCGATCCCC
GGTTTCTCGA CGCGCTGGTA CGAGAACCTG ATCGCGTCCG ACGAGTGGCG CATGGCCGCG
AAGAACAGCT TCATCGTCGC GCCGTCGGCG ACCGTCGTCG CGACCGTGCT CGGCACGCTC
GCCGCGATCG GCCTCACGAA GGCGGATTTC CGCGGCAAGG GGCTGCTGAT GGCCGTGCTG
CTGTCACCGA TGATCGTGCC GGTCGTCGTG GTCGGCGTCG GCATGTACCT GTTCTTCGCG
CCGCTCGGGC TCGCGAATAC CTACACGGGG CTGATCGCCG CGCATGCCGC GCTCGGCGTG
CCGTTCGTCG TGACGACGGT CGCCGCGACC CTGCAGGGCT TCAACCAGAA CCTGGTGCGC
GCGAGCCTGT CGCTCGGCGC GAATCCCGTC ACGACGTTCT TCCGCGTGAC GCTGCCGGTG
ATCGCGCCGG GCGTGATGTC GGGCGCGCTG TTCGCATTCG CGACGTCGTT CGACGAAGTC
GTCGTCACGC TGTTCCTCGC GGGCGCGGAC CAGACGACGC TGCCGCGCCA GATGTTTACC
GGCATTCGCG AGAACATCAG CCCGACGATC GCCGCGCTCG CGACGATCCT CATCATCTTC
TCGACGAGCC TGCTGCTCGC GCTCGAATGG CTGCGCGGAC GCAACGCGCG ACGTGCGGTG
TCGTAA
|
|---|
| Protein sequence | MSTMKLARPL FAPHMSFVER AWYVALRVLV VLTLLYLILP VLAIVPLSFS SSTFLVYPIP
GFSTRWYENL IASDEWRMAA KNSFIVAPSA TVVATVLGTL AAIGLTKADF RGKGLLMAVL
LSPMIVPVVV VGVGMYLFFA PLGLANTYTG LIAAHAALGV PFVVTTVAAT LQGFNQNLVR
ASLSLGANPV TTFFRVTLPV IAPGVMSGAL FAFATSFDEV VVTLFLAGAD QTTLPRQMFT
GIRENISPTI AALATILIIF STSLLLALEW LRGRNARRAV S
|
|---|
| |